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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022187 ID=TCONS_00022187|Name=TCONS_00022187|organism=Clytia hemisphaerica|type=transcript|length=2667bpRun BLAST on NCBI protein sequence of TCONS_00022187-protein >TCONS_00022187-protein ID=TCONS_00022187-protein|Name=TCONS_00022187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp MALSIPKSVMQNMMKDGAKSFRGLEEAVYRNIEACRQLTKILRSSYGPNGRun BLAST on NCBI transcript from alignment at sc0000408:10994..35912+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022187 ID=TCONS_00022187|Name=TCONS_00022187|organism=Clytia hemisphaerica|type=transcript|length=24919bp|location=Sequence derived from alignment at sc0000408:10994..35912+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000408:10994..35912+ >TCONS_00022187 ID=TCONS_00022187|Name=TCONS_00022187|organism=Clytia hemisphaerica|type=CDS|length=21216bp|location=Sequence derived from alignment at sc0000408:10994..35912+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022187 vs. Swiss-Prot (Human)
Match: TCPQ (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4) HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0 Identity = 356/545 (65.32%), Postives = 448/545 (82.20%), Query Frame = 3
Query: 216 MALSIPKSV-MQNMMKDGAKSFRGLEEAVYRNIEACRQLTKILRSSYGPNGMNKMVINHLDKLFVTSDAATMLHELEVQHPAAKMLLFASQMQEQECGDGTNWVLIFSGALLNSAEELLRMGLSPAEVIEGYDMACKKALEILPDLVKYTVKDLRDKSEIIKAMKPVITSKQYGNEDFLSELITRACLSVYPQTGNFNVDNVRVQKILGSGLYSSEIVNGMVFRRHVEGDITKVANAKICVLSCPLDSMATETKGTVLIKNADELVNFSKGEEDLLESQIKSIADTGCNVIVTGGKAADMAVHFCNKYKIMVVRLMSKFELRRLCRATQATALPRITAPTPEEAGQCDSVALAEIGDTPVVVFRQDREDNAVATIVIRGATTNIMDDIERAVDDGVNCFKALTRDSRMLPGAGAVEMELAQRISTYGQTIPGLEQYAVKKFAEAFEIFPRTMAENAGVKATELISTLYAAHTSGEGNIGFDIEGEGIATCDVLERGILDSFLVKYWGLKFASNAASTVLRVDQIIMAKQAGGPKPKQ-NPNWDED 1844
MAL +PK+ M+K+GAK F GLEEAVYRNI+AC++L + R++YGPNGMNKMVINHL+KLFVT+DAAT+L ELEVQHPAAKM++ AS MQEQE GDGTN+VL+F+GALL AEELLR+GLS +EVIEGY++AC+KA EILP+LV + K+LRD E+ ++ I SKQYGNE FL++LI +AC+S++P +G+FNVDN+RV KILGSG+ SS +++GMVF++ EGD+T V +AKI V SCP D M TETKGTVLIK A+EL+NFSKGEE+L+++Q+K+IADTG NV+VTGGK ADMA+H+ NKY IM+VRL SK++LRRLC+ ATALPR+T P EE G CDSV L+E+GDT VVVF+ ++ED A++TIV+RG+T N+MDDIERAVDDGVN FK LTRD R++PG GA E+ELA++I++YG+T PGLEQYA+KKFAEAFE PR +AEN+GVKA E+IS LYA H G N+G DIE E A D+LE GILD++L KYW +K A+NAA TVLRVDQIIMAK AGGPKP +WD+D
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKDWDDD 545 The following BLAST results are available for this feature:
BLAST of TCONS_00022187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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