|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022194 ID=TCONS_00022194|Name=TCONS_00022194|organism=Clytia hemisphaerica|type=transcript|length=2821bpRun BLAST on NCBI protein sequence of Conserved uncharacterized protein >TCONS_00022194-protein ID=TCONS_00022194-protein|Name=Conserved uncharacterized protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp MGFWVNEFPKYFVLFIWLGINVMLFALDYIKFDDEKKYFYLKYIVKTGLPRun BLAST on NCBI transcript from alignment at sc0000408:121788..131903+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022194 ID=TCONS_00022194|Name=TCONS_00022194|organism=Clytia hemisphaerica|type=transcript|length=10116bp|location=Sequence derived from alignment at sc0000408:121788..131903+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000408:121788..131903+ >TCONS_00022194 ID=TCONS_00022194|Name=TCONS_00022194|organism=Clytia hemisphaerica|type=CDS|length=35280bp|location=Sequence derived from alignment at sc0000408:121788..131903+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022194 vs. Swiss-Prot (Human)
Match: CY24B (Cytochrome b-245 heavy chain OS=Homo sapiens GN=CYBB PE=1 SV=2) HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0 Identity = 293/572 (51.22%), Postives = 385/572 (67.31%), Query Frame = 3
Query: 252 MGFW-VNEFPKYFVLFIWLGINVMLFALDYIKFDDEKKYFYLKYIVKTGLPVARGSAAMLNFNCMLILFPVCRNLLSLIR-DFPFLPHAVGRIMDKNITFHRMIAYMICFATALHLGAHIFNFEYLIASR-DATTGLTKYLNDFKDGEDKDRLNPIESAGLDPVLEL---LQXXXXXXXXXXXXSLITMVSSSTELIRRSYFEVFWFTHHLFVVFFIGMLFHGFGELLRSQNNTS--EHNPEYCSQD-DRYNTDSECQKPPRFSAAGPQSWKWIIAPMGLYLIERCIRFYRSFQTCEVKKVVKHPSKVIEVQMRKPGFRAQAGQYIFLHCPSISPLEWHPFTLTSCPEEDFFSVHIRIVGDWTQALSNSCGNDTDNV-DVSKIPRLACDGPFGTASTDVFRHENVICCGAGIGVTPFASILKSIWYRQQRKDTTLRIKKVYFYWICPDTNAFEWFSDLLQSLEQQMMEKGEMGFLEYNIYLTRGWGKGDARNIILHENDEEDVITGLKQKTNFGRPNWDEIFRTTAIKHKGSDVGVFFCGPAILSHTLHEMSNKHSNETTK---FYYNKENF 1928
MG W VNE FV+ +WLG+NV LF Y +D K+FY + ++ + L +AR AA LNFNCMLIL PVCRNLLS +R V R +D+N+TFH+M+A+MI +A+H AH+FN E+ + +R + + + L++ D +++ LN +P L + +AGITGV+IT+ LI +++SST+ IRRSYFEVFW+THHLFV+FFIG+ HG ++R Q S HN C Q + EC P+F+ P +WKWI+ PM LYL ER +RF+RS Q + KVV HP K IE+QM+K GF+ + GQYIF+ CP +S LEWHPFTLTS PEEDFFS+HIRIVGDWT+ L N+CG D D K+P++A DGPFGTAS DVF +E V+ GAGIGVTPFASILKS+WY+ T L++KK+YFYW+C DT+AFEWF+DLLQ LE QM E+ GFL YNIYLT GW + A + +H ++E+DVITGLKQKT +GRPNWD F+T A +H + +GVF CGP L+ TL + S +S + F +NKENF
Sbjct: 1 MGNWAVNEGLSIFVILVWLGLNVFLFVWYYRVYDIPPKFFYTRKLLGSALALARAPAACLNFNCMLILLPVCRNLLSFLRGSSACCSTRVRRQLDRNLTFHKMVAWMIALHSAIHTIAHLFNVEWCVNARVNNSDPYSVALSELGDRQNESYLNFARKRIKNPEGGLYLAVTLLAGITGVVITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRGQTAESLAVHNITVCEQKISEWGKIKEC-PIPQFAGNPPMTWKWIVGPMFLYLCERLVRFWRSQQKVVITKVVTHPFKTIELQMKKKGFKMEVGQYIFVKCPKVSKLEWHPFTLTSAPEEDFFSIHIRIVGDWTEGLFNACGCDKQEFQDAWKLPKIAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLT-GWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 570 The following BLAST results are available for this feature:
BLAST of TCONS_00022194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.