TCONS_00022204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022204
Unique NameTCONS_00022204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022204 ID=TCONS_00022204|Name=TCONS_00022204|organism=Clytia hemisphaerica|type=transcript|length=1709bp
AATGTATACACAataaaatTCAATGGCACTCCTTGGAGCTATGTGGATAA
AATTCAATCATGTACATCTCGCTTGATGATCCGTGAAATTGTTGGTGCTT
TAACTGGATATCAAGTGATGCTTTACGGGAATACTAATCTCAAATCCACG
GCTGATACTTTTTTCTTCAGATATGTTCCAAACCAGCAAGCTGAGCAATT
TACGACTGTCAGTTTGAATCGAATGGATCGACTTCGATTGATCCATATGG
AGCCCAACGTTGTTTCTGCCATTGAAAATTGTGTACGTCAAACATGGGTT
CGTGGAGTACAAGAAGTCTTAGATAAAAGACCTTTGTGTTATGAATTGAA
GTTGAGAGGCTATCCATGGTGGTGCTATGGGGAGGAAGGAGTATCAGCTC
GACTCCTCATTTGCCGCATCCTGGAAACAATGGCAAGCATTGGATACTAC
ATTGTGTCAGGTCTAGATGTTACACGAAAAGATAACGATAAGTCGCTGTT
ATTGTTCAGACAGGGTGCTCCGATGCAAGCACGTTTCTTGGTCTGTTCTT
TGAATTCAACTGATAAAGTCAAACTTATAAACGCTCCCAATGAAGTTGTT
CAGGCTGCTCAAAGAATCTTTGCATTATGGGTATTAGGACATCAAGTGAA
GCCGGCAGCTGAACTACCACCTGGCTGCTCTTACCAAgtgAAATTGAACG
GAAACCCATGGTCGAATATGATGGTCAAAGATGGTTACCACGGACGTGCT
TTATTATTAGGATTACTAGGTGCTTTTTCTGACCTCGGTTGGCGTCTGGT
CACATCAGCTGATGTTTCTGCGAAGTATGTTCACCAGGACAAAGGACCGG
ACTATCCTCTTGATGTACACAGTTGGTATTTCATGTATGACCCAAGCCTT
CTCGCACAACGTCAACCTATGCATCAACAATATGGATTACTATATCCCAC
CCTTCCTGTTCAGGGTGGCCCGCCACCTGTTTATTATGCACCGCCACCAG
CATACGCCCCACCGCCCCCAGGTTACAATCAGGTCGCCCCACCTCTAATG
CCACCTCAGTAAGATTTGGTTGtttcaaaatggaatattttgaattttat
ttgcttGGACGTTGAATGGTATTATGTTTTTGGTTCTGGATCATCCAAAT
TCCAAGGTCATTTTCATATAttatgatggtatgatggttgacaataaatt
tgaaaaatttaactgactgttttaaatatattttaaaatggGAATTGATT
GGTAGGTATTGATGCTTGTTCAAGAGGGGGTAGTTAGAAATATGATGGta
ttaatatttttgtaagGTAATATTATCGAATATATAACTTTGATATAATC
TTTAGTAGTATAAGTGTCTTTAGAGTATTTGTGTATAATATACAATCTGT
CTTGTAATTTTTGTATAATTAATGTTATTTCTGTTTTCTAGATTTGATAA
TTCTCACGTTTtctgttttgttattttttctaataTTCAATCCACTATGT
CCATactatatttattttttgagtgAGCTCGCTCAATACTTACTTTGTAT
TCTCCTCATACATTTTTTGTTTGGtgcttttatttttcatttctgtcATA
TATATAcaagatataaaaaatatatagaatGAATATGTACAAATATTGAA
ATACAATTGCAGAATTTGGAGTTTGGCAATTGAAATATCTCCAAAATAAT
ACAGTGGGc
Run BLAST on NCBI

transcript from alignment at sc0000408:146153..150947+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022204 ID=TCONS_00022204|Name=TCONS_00022204|organism=Clytia hemisphaerica|type=transcript|length=4795bp|location=Sequence derived from alignment at sc0000408:146153..150947+ (Clytia hemisphaerica)
AATGTATACACAGTAAGAATCTATCcataagatttttaaaatggcTTTCT
GGTCATTTAAAAACAAGTTTGACACAATTTTTGTGTAGCTACACCTGGTA
ATATGCCAGAAATGAGTTACCTTCATTGATATGCCTGTATTAAACAGTAT
tagtaagatttttgaaattttttaaaaattgaaaattgggcTTTCTTCTT
AACGATTCCCATTACCAATTTTTGATAGGTAGATTGGGGAAGCAAAAGtt
actttttttattaaaatcaaaaacaacctttttttatttcctaTCTCTTT
TTACTGGCTAGTAtaatgatttgaaatttttaagataaaatTCAATGGCA
CTCCTTGGAGCTATGTGGATAAAATTCAATCATGTACATCTCGCTTGATG
ATCCGTGAAATTGTTGGTGCTTTAACTGGATATCAAGTGATGCTTTACGG
GAATACTAATCTCAAATCCACGGCTGATACTTTTTTCTTCAGATATGTTC
CAAACCAGCAAGGTAACATTGGTCCTCATGACTTAACCTTTTGAGgtctt
tttcaaactttgaattttttccgGGCCTAGGACCAGTTTCGAGCGTCAAA
ATAATTCTATCCTATGTACTGACTATCCTATACACATTTGACGTGCTTTT
AACCTTTATTTTACCAACCTATCTATGATTTTTAGCTGAGCAATTTACGA
CTGTCAGTTTGAATCGAATGGATCGACTTCGATTGATCCATATGGAGCCC
AACGTTGTTTCTGCCATTGAAAATTGTGTACGTCAAACATGGGTTCGTGG
AGTACAAGAAGTCTTAGATAAAAGACCTTTGTGTTATGAATTGAAGTTGA
GAGGCTATCCATGGTGGTGCTATGGTAATTGAAATTGTTCTATTTACCAG
GGAAAAATGGGAAAGTGACCAAATCTTTGACCAGAAAATCCTACTCGGCC
AACTATAGCGTGTATatgattttaaagttttgataaaGAGAGATATCTCT
TTTCAAATTCTCTGGTTACTTTGATTTCTCCCCAACTAGGTAAAGCAAAT
ATTCTTTATCTAGCTTCAATCACCTTGGGTACTGGTATTAgagatttgat
aaaattttagggtTCCTAATTGAAGCTAGGTGCAGGTGCAGCTAATAAAC
TAATTGCTTGAGTACTGAACATTTGGTAACAGGAGTAACTGTTAAACCTT
TGAACTCTTTCAATTTCTTTAGGGGAGGAAGGAGTATCAGCTCGACTCCT
CATTTGCCGCATCCTGGAAACAATGGCAAGCATTGGATACTACATTGTGT
CAGGTCTAGATGTTACACGAAAAGATAACGATAAGTCGCTGTTATTGTTC
AGACAGGGTGCTCCGATGCAAGCACGTTTCTTGGTCTGTTCTTTGAATTC
AACTGATAAAGTCAAACTTATAAACGCTCCCAATGAAGTTGTTCAGGTTT
GATATTCATTTCATTCAATAGCTTTATGAATATTTATTTAGCCTACCAAG
CGTTGCACCCACCAAGTAAAGTGGTATATACACACAAAAAAGTTCTCTGG
ATGGTGTTGGACAAGGTTTCAGAGAAAGACTGAGCCCAAAGAACATGAAA
CTTAAAACCAATCAAatcttgaaaatgttttgatttcattcTGTATGTTG
TCATTGGTTCAATTCTTTGAGAATTAAACAAAATTATCTAAAAGTATCAA
CAATTATTGACTCTTAGGCTGCTCAAAGAATCTTTGCATTATGGGTATTA
GGACATCAAGTGAAGCCGGCAGCTGAACTACCACCTGGCTGCTCTTACCA
AGTAAGAATACTATAGTTTTCATtatctttcaaacaaaaatgcTTTGGTG
GAAatgttatacattttgaaaactcaagcaTTTTGCATTCATCGCCTCTA
TGATTTATCAAAGTGAAGAtgtgtttttttaactttgcatTGATTTCATT
ATCTTAGactgaaattgattttctcATCTCAAATTATTTACCCTGTAATt
ccatatttttactttttaggtgAAATTGAACGGAAACCCATGGTCGAATA
TGATGGTCAAAGATGGTTACCACGGACGTGCTTTATTATTAGGATTACTA
GGTGCTTTTTCTGACCTCGGTTGGCGTCTGGTCACATCAGCTGATGTTTC
TGCGAAGTATGTTCACCAGGACAAAGGACCGGACTATCCTCTTGATGTAC
ACAGTTGGTATTTCATGTATGACCCAAGCCTTCTCGCACAACGTCAACCT
ATGCATCAACAATATGGATTACTATATCCCACCCTTCCTGTTCAGGGTGG
CCCGCCACCTGTTTATTATGCACCGCCACCAGCATACGCCCCACCGCCCC
CAGGTTACAATCAGGTCGCCCCACCTCTAATGCCACCTCAGTAAGATTTG
GTTGtttcaaaatggaatattttgaattttatttgcttGGACGTTGAATG
GTATTATGTTTTTGGTTCTGGATCATCCAAATTCCAAGGTCATTTTCATA
TAttatgatggtatgatggttgacaataaatttgaaaaatttaactgact
gttttaaatatattttaaaatggGAATTGATTGGTAGGTATTGATGCTTG
TTCAAGAGGGGGTAGTTAGAAATATGATGGtattaatatttttgtaagGT
AATATTATCGAATATATAACTTTGATATAATCTTTAGTAGTATAAGTGTC
TTTAGAGTATTTGTGTATAATATACAATCTGTCTTGTAATTTTTGTATAA
TTAATGTTATTTCTGTTTTCTAGATTTGATAATTCTCACGTTTtctgttt
tgttattttttctaataTTCAATCCACTATGTCCATactatatttatttt
ttgagtgAGCTCGCTCAATACTTACTTTGTATTCTCCTCATACATTTTTT
GTTTGGtgcttttatttttcatttctgtcatatatatatatacaagatat
aaaaaaatttagaatgaaTATGTACAAATATTGAAATACAATTGCAGAAT
TTGGAGTTTGACAATTGAAATATCCCCAAAATAATACAGTGGGctctcaa
acttttttttccgaatttttctataatttagACGACTTTAGGCCCAGGAG
GCGGGTACAAACTTTCGCAATCGAGAcataaaaattaatattttcacaCG
AAAAAATAGCTTCGAGGGACATAATACTCCTATACCACTATACTTGAATT
GGGTTAAAACTTTAGTATTTTGACTTGAGGCTTTTAAATAGGCTAAAAAG
GGCCACaaatcttacattttattttatgttGTAAGtattacagattttct
attttgtgaaGAANATGGTGTTGGACAAGGTTTCAGAGAAAGACTGAGCC
CAAAGAACATGAAACTTAAAACCAATCAAatcttgaaaatgttttgattt
cattcTGTATGTTGTCATTGGTTCAATTCTTTGAGAATTAAACAAAATTA
TCTAAAAGTATCAACAATTATTGACTCTTAGGCTGCTCAAAGAATCTTTG
CATTATGGGTATTAGGACATCAAGTGAAGCCGGCAGCTGAACTACCACCT
GGCTGCTCTTACCAAGTAAGAATACTATACTTTGGTGGAAATGTTATACA
TTTGAAAAgtctaaaaaaagtttaaaactcAAGCATTTTGCATTCATTGC
CTCTATGATTTATCAAAGTGAAGATGTGTTTTTTAACTTTGCATTGATTT
CATTATCTTagattgaaattgattttctcATCTCAAATTATTTACCCTGT
AAttccatttttttactttttaggtgAAATTGAACGGAAACCCATGGTCG
AATATGATGGTCAAAGATGGTTACCACGGACGTGCTTTATTATTAGGATT
ACTAGGTGCTTTTTCTGACCTCGGTTGGCGTCTGGTCACATCAGCTGATG
TTTCTGCGAAGTATGTTCACCAGGACAAAGGACCGGACTATCCTCTTGAT
GTACACAGTTGGTATTTCATGTATGACCCAAGCCTTCTCGCACAACGTCA
ACCTATGCATCAACAATATGGATTACTATATCCCACCCTTCCTGTTCAGG
GTGGCCCGCCACCTGTTTATTATGCACCGCCACCAGCATACGCCCCACCG
CCCCCAGGTTACAATCAGGTCGCCCCACCTCTAATGCCACCTCAGTAAGA
TTTGGTTGtttcaaaatggaatattttgaattttatttgcttGGACGTTG
AATGGTATTATGTTTTTGGTTCTGGATCATCCAAATTCCAAGGTCATTTT
CATATAttatgatggtatgatggttgacaataaatttgaaaaatttaact
gactgttttaaatatattttaaaatggGAATTGATTGGTAGGTATTGATG
CTTGTTCAAGAGGGGGTAGTTAGAAATATGATGGtattaatatttttgta
agGTAATATTATCGAATATATAACTTTGATATAATCTTTAGTAGTATAAG
TGTCTTTAGAGTATTTGTGTATAATATACAATCTGTCTTGTAATTTTTGT
ATAATTAATGTTATTTCTGTTTTCTAGATTTGATAATTCTCACGTTTtct
gttttgttattttttctaataTTCAATCCACTATGTCCATactatattta
ttttttgagtgAGCTCGCTCAATACTTACTTTGTATTCTCCTCATACATT
TTTTGTTTGGtgcttttatttttcatttctgtcATATATATAcaagatat
aaaaaatatatagaatGAATATGTACAAATATTGAAATACAATTGCAGAA
TTTGGAGTTTGGCAATTGAAATATCTCCAAAATAATACAGTGGGc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012451XLOC_012451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022204-exon-sc0000408-1491911889:146153..146164TCONS_00022204-exon-sc0000408-1491911889:146153..146164Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1510915933:146153..146164TCONS_00022204-exon-sc0000408-1510915933:146153..146164Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1575043694:146153..146164TCONS_00022204-exon-sc0000408-1575043694:146153..146164Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1491911889:146487..146664TCONS_00022204-exon-sc0000408-1491911889:146487..146664Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1510915933:146487..146664TCONS_00022204-exon-sc0000408-1510915933:146487..146664Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1575043694:146487..146664TCONS_00022204-exon-sc0000408-1575043694:146487..146664Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1491911889:146838..147026TCONS_00022204-exon-sc0000408-1491911889:146838..147026Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1510915933:146838..147026TCONS_00022204-exon-sc0000408-1510915933:146838..147026Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1575043694:146838..147026TCONS_00022204-exon-sc0000408-1575043694:146838..147026Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1491911889:147375..147598TCONS_00022204-exon-sc0000408-1491911889:147375..147598Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1510915933:147375..147598TCONS_00022204-exon-sc0000408-1510915933:147375..147598Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1575043694:147375..147598TCONS_00022204-exon-sc0000408-1575043694:147375..147598Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1491911889:147870..147953TCONS_00022204-exon-sc0000408-1491911889:147870..147953Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1510915933:147870..147953TCONS_00022204-exon-sc0000408-1510915933:147870..147953Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1575043694:147870..147953TCONS_00022204-exon-sc0000408-1575043694:147870..147953Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1491911889:149926..150947TCONS_00022204-exon-sc0000408-1491911889:149926..150947Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1510915933:149926..150947TCONS_00022204-exon-sc0000408-1510915933:149926..150947Clytia hemisphaericaexon
TCONS_00022204-exon-sc0000408-1575043694:149926..150947TCONS_00022204-exon-sc0000408-1575043694:149926..150947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:146153..150947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.25711e-09	5.06669e-09	0.293043	0.000355856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.31439e-07	2.2088e-07	0.096713	0	0	0	0	0	0	2.65576e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top