TCONS_00022208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022208
Unique NameTCONS_00022208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022208 ID=TCONS_00022208|Name=TCONS_00022208|organism=Clytia hemisphaerica|type=transcript|length=965bp
CATCCGAAGTACCTGGGCGACTCTGCTTCATTCTTTCACGAAGAGTCAAC
AAGCTTATATGTTTTTATGCAGgtatcaaaaatgaaaaggtttTATCTCC
AGAATGCTATCAATTCAAATTGGAAGGTGACCCGTTCAATTACTTTGGAG
ATAACTCTTCCAACAAGACAGAAGCGTGTAACCTTTACAGTGAAATCATC
AATAGCTATTACAAACGTGGCTGGAAGttaATTGTTGGTACAATCATGAG
TCATCGCAACTTGGAAGACCCCATCCTTATCTTCAAGAAGATCATAAATC
CTAGCAAGAACCCTTTACTTTCCATAGCCATCGACCATTTCCACATACAG
CTGGATAACCTACCAACAGATCTTATACCAACTGTAACGTACGTCGTTGA
GAATCATCTCAATCATGAtatcaaaaagatcaaacagGACACAGACGGAA
CTGTCATTTATAAATTAAAAGGAATGGTGGGCTTGCATGGTGAAGAAACC
TGGCAATTCGTGCAAAAATTACATGAAATTCTCTATAACAACCATTACAC
AACATTCGGCCACATTCCACTACGTGCTTATAAATGTTTCGACTTGTTAT
TCTTCCAACATTCAACCACTATTCTTGACCAAGAACTCTTCACAATGTAT
CTTTTACATGGAGACACAATAGAATTAGAGAATTCAAATCACGTGATCAA
CAACGCCATGGTAGAAGTTATTTCAGAAGCCTGGAAAGGAGGTATACAAA
AACAAAGTGAAGATGGCGCACGTTTCAAGTTGAAGTTGAAAGGATATCCT
TTCTCTACTTTAAATGAAATGGAATGTTTAGCTACGGATTCATTATTCGC
CAATATTCTTGAACAATTAGTGTCTGTCGGATATTCTATAGACTGTTCAT
TCACGCAAATCAAGTTCGATAAACGCATTATCTTCAAAAGACAAAAGCCA
GTTCATAGAGCGANC
Run BLAST on NCBI

transcript from alignment at sc0000408:153023..156508+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022208 ID=TCONS_00022208|Name=TCONS_00022208|organism=Clytia hemisphaerica|type=transcript|length=3486bp|location=Sequence derived from alignment at sc0000408:153023..156508+ (Clytia hemisphaerica)
CATCCGAAGTACCTGGGCGACTCTGCTTCATTCTTTCACGAAGAGTCAAC
AAGCTTATATGTTTTTATGCAGGTATTTATCGAATTTCATTGTTATAATA
CCTTATCTTattttttacgccggcccttattggcgttatttttgggcaca
tggcgtaataagggccggtgttaaaaggaccggcgtaaaaagggccaaga
ttttgcaatttttatctaaaggTGGCGTTAATttattttcgataattttt
tctcaatttaaaggattttaggtatgattcgcagacaaaaattatccatt
gttttactccatatctaAAACCTcacaaaaatcagtgatttttaAGAATG
GAATTTTTAACAATATACTACCGAAacatgacattttaatgtaaatttta
aacattatttactaatttgaagcataagtagccatttaaaaattttttgg
cgTTTTTAACGGctctaattggcgtaagcccaaaattagacTGTGGCATA
ATAAGGGCCgtcgtaaaaagggccgataaggtaggtaGAAGGCCTCAAAG
gagaaattttcgcgaaattaagtaaAATATTAAATTGTATTTTAACCTAG
AAACTTAAACAAAATCTACACCACTCCAAACTTTCACTTAAAGAAGAGAA
CTACGTGTTAAAATGACATGAAACCAGTATTCTCACTCATGATATTTATT
TTAGACCACTTAGTTATGATCATTTGACATACTtaaatgggataaacttt
cgcggggacttaatctAGCGGATGAGCACTTCCCTGATTTTTCGCGTAAT
TTCGCTGATCAGGATTacatctaatttttctaaagtgattccaaattttg
caaaatcggGTTAGCAAACAGAAATTTTGACATGGTAGTgtgcaaaaatt
ggaaaataacGAAGAGATTTGAGTAGTCTGATTTGCGGGACGAAAAAACG
GCgatagaaatttcaaatttcaaattttcgcgggtacttaatttcgcgga
tgaggcccttccaaatttccattgggatttaatttcgtggattttcgcgg
atgacactcaaatttaatccccgcgaaagtttatcccatcaAAGTAATTA
GATATTTTTCCCAAATACTCTAATCACATTATTCTAGGGGACAGACGAAT
TAAAGCTGTACGTGACGCGATAATAAAATGTTGGTCAAAaggtatcaaaa
atgaaaaggtttTATCTCCAGAATGCTATCAATTCAAATTGGAAGGTGAC
CCGTTCAATTACTTTGGAGATAACTCTTCCAACAAGACAGAAGCGTGTAA
CCTTTACAGTGAAATCATCAATAGCTATTACAAACGTGGCTGGAAGGTAT
TTTCAATTTCACTTGCATTTATTTCTTTCCTAGCAAACTATTTAAATTCA
TTCCAGATTATGCTTTAAAATATTAGCGGAATTAGTTATAACATTTTTCT
TGGAGTTTCTATCTCATATTTCTTTCATGAACAAGGTACTTAAAAGACGT
TCTAGACGCATATTTTCTGCAAGCAAGGGGATGCAATATAGATTTTATAG
GACCTATTCTCACTCGCATTTTTTGCACTTGATTGAACTATTACGTCTAA
CTTGTGCTcaattttcccctttttcatttttcagttaATTGTTGGTACAA
TCATGAGTCATCGCAACTTGGAAGACCCCATCCTTATCTTCAAGAAGATC
ATAAATCCTAGCAAGAACCCTTTACTTTCCATAGCCATCGACCATTTCCA
CATACAGGTATAAATCACACATCATTGTTTCTTTGCGCACTAccttaaag
aaagaaataattcgaaaaaagaaaattcgatGGATTCGCCCAAACATAAT
CCTCTAActgctaaattaaattcccgccaaattctAGCCATCTGcaaatt
tccgccaaaatttcttccctaagaaagttttattatgttttttaaAGCTC
CTGTGAAATGTTTTGAGTCACAGATTTCGTTATTTGGTCCACAGGTTGGT
TTTAGAGGAAAGAATACTTTTACTTCATTTGACTTTTGACTTTCGTTTTA
GCTGGATAACCTACCAACAGATCTTATACCAACTGTAACGTACGTCGTTG
AGAATCATCTCAATCATGAtatcaaaaagatcaaacagGACACAGACGGA
ACTGTCATTGTAAGAGATTCATGATGTCTAACTTGatgttggaaaatttt
gaaaaataagttttgaataAGGTTCTATTCCTTCTGTTCCAACAAATAAC
TAAAGATTAGACAAATTTAAGGCTGTGATTTcaggaaataataaaaataa
ttttaagccCCTCTTTCTTATACCTGATTCAGCCAGTGAGATCTTTTTGA
TCCATGTAAGTTCACTGAGTGTGTGCTGGGTGGGTGTACTGAGTGTGCTG
GCTGGCATTAAACCCTTGAATCTTCCTCTTTACAGTATAAATTAAAAGGA
ATGGTGGGCTTGCATGGTGAAGAAACCTGGCAATTCGTGCAAAAATTACA
TGAAATTCTCTATAACAACCATTACACAACATTCGGCCACATTCCACTAC
GTGCTTATAAATGTTTCGACTTGTTATTCTTCCAACATTCAACCACTATT
CTTGGTATGTttgaaacttgatttttctttatatgaTTGACATATTAGGG
GCATATTAGCTCTTTTGTACGTTTTATAccctttttattagttttaattt
ttgtccTCTAGTGATTGATAGACTCATCCCGGTCAAATCAACAAACATTT
TACACTTGCGATCCCCATGATGGCTTTAAAAGCCTACTGAAATTATATGG
ATATaacatcacctcgggttaataaatctcaataaccaactttgacctat
tgaatatctgcttattatttTCTCTTTAAGACCAAGAACTCTTCACAATG
TATCTTTTACATGGAGACACAATAGAATTAGAGAATTCAAATCACGTGAT
CAACAACGCCATGGTAGAAGTTATTTCAGAAGCCTGGAAAGGAGGTATAC
AAAAACAAAGTGAAGATGGCGCACGTTTCAAGTTGAAGTTGAAAGGATAT
CCTTTCTCTACTTTAAATGGTAAGTCTGAAGTTTGAATGAGCTGGTCACA
TTTTAATCGTGAAAAAGTGATAGTGAAAAACCGCCAACAGAAACCACGTG
ATCTTTAGGGAGCGATTACCGAGCGGTCAAGGCGTCAGCGCCATAAACCA
GGGGCTCGCGGGCTCTGTGAAAGTCCTAGATTACAGGGCTCTTCGTGTAA
AATATCGAACCGCCTTACTAACGAAATTCAGACAAATTCGTTAATTTTGG
AGAAGTAAATTACGAAAttcttcttcttgtttttcAGAAATGGAATGTTT
AGCTACGGATTCATTATTCGCCAATATTCTTGAACAATTAGTGTCTGTCG
GATATTCTATAGACTGTTCATTCACGCAAATCAAGTTCGATAAACGCATT
ATCTTCAAAAGACAAAAGCCAGTTCATAGAGCGANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012453XLOC_012453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022208-exon-sc0000408-1491911889:153023..153094TCONS_00022208-exon-sc0000408-1491911889:153023..153094Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1510915933:153023..153094TCONS_00022208-exon-sc0000408-1510915933:153023..153094Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1575043694:153023..153094TCONS_00022208-exon-sc0000408-1575043694:153023..153094Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1491911889:154214..154368TCONS_00022208-exon-sc0000408-1491911889:154214..154368Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1510915933:154214..154368TCONS_00022208-exon-sc0000408-1510915933:154214..154368Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1575043694:154214..154368TCONS_00022208-exon-sc0000408-1575043694:154214..154368Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1491911889:154657..154779TCONS_00022208-exon-sc0000408-1491911889:154657..154779Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1510915933:154657..154779TCONS_00022208-exon-sc0000408-1510915933:154657..154779Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1575043694:154657..154779TCONS_00022208-exon-sc0000408-1575043694:154657..154779Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1491911889:155074..155181TCONS_00022208-exon-sc0000408-1491911889:155074..155181Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1510915933:155074..155181TCONS_00022208-exon-sc0000408-1510915933:155074..155181Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1575043694:155074..155181TCONS_00022208-exon-sc0000408-1575043694:155074..155181Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1491911889:155458..155626TCONS_00022208-exon-sc0000408-1491911889:155458..155626Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1510915933:155458..155626TCONS_00022208-exon-sc0000408-1510915933:155458..155626Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1575043694:155458..155626TCONS_00022208-exon-sc0000408-1575043694:155458..155626Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1491911889:155903..156091TCONS_00022208-exon-sc0000408-1491911889:155903..156091Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1510915933:155903..156091TCONS_00022208-exon-sc0000408-1510915933:155903..156091Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1575043694:155903..156091TCONS_00022208-exon-sc0000408-1575043694:155903..156091Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1491911889:156360..156508TCONS_00022208-exon-sc0000408-1491911889:156360..156508Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1510915933:156360..156508TCONS_00022208-exon-sc0000408-1510915933:156360..156508Clytia hemisphaericaexon
TCONS_00022208-exon-sc0000408-1575043694:156360..156508TCONS_00022208-exon-sc0000408-1575043694:156360..156508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:153023..156508 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.86817	3.53725	6.28058	6.19762	0.62093	0.879797	0.505053	0.747625	0.181017	0.0128748	1.60797	0.416319	3.22352	3.11418	4.74675e-10	0.824891	1.99472	6.19299	0	1.46704	1.22159	0.000166588	4.10435	2.55046	6.88128	6.04967	3.0001	2.61884	10.7072	7.03397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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