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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022210 ID=TCONS_00022210|Name=TCONS_00022210|organism=Clytia hemisphaerica|type=transcript|length=2104bp
TTTAGCTACAGATTCATTATTCGCCAATATTCTTGAACAATTAGTGGCTG
TCGGATATTCTATAGACTGTTCATTCACGCAAATCAAGTTCGATAAAcgc
attattttcaaaagacaaaagCCAGTTCACAGAGCGAAGTTTATGTGTTT
AAATACGAAATTTCATTGTGTGCGATTGGTCAATGCCCCAGATGAAATTA
AAGAGGCTACTGAGGCAATGGTCAAAGAAATGAAACTTGATATGAAGAAA
ATCAAACGAGACGCACCCGGCTGCTCACTCGATGTTAGTACCGATAGATT
TTCTCTTCACTCTTGATATTAGTCTGCAGTCCGTTCAACCCCAGCTGGAT
TATTGtcattttccaatgtttctcttttttcaaaggcaaaagaaaattaa
aggaaggaaaagttttgaaatcccTAACAGATGCGATTCAAGAACAGAGG
AATATGGGAACAACTTGAAGGACACGACACCTATGTTGCTCGTTCTCTCC
TCGTTGCTTTACTTGGTAAATACACAGATCTGCAATACCAATTTATTTTA
TCTGCTGACTTGACGGAAAAACAAGGAGAGGGAAGTAGTAGTTGGTTTTT
CATGTATGATAATGAACAAGTGACTGCTAAACATCAGTTGAAAGTGGAAA
GTCAAAGCCGTTCACCAAGTCCTAATAGACATTCAGCGCACAATAGCCCG
CGTCATAGTCCGCGCtcacatcatcatcatcaccgGTCACGTAGCCCTCG
TCAAAGTCCACGTGTTCAAAGAACAATTCATAATGGTAACACAGATGCGA
TAAAACCCTTCTCAGGTTCTGAAAGACATTTGCTACCACCGGCATTAGTT
TCTGAACCTCCACCGAGTTATGAAGAAGCGACTAAGAATTGTTGATGTGA
TATTTTTTGAATGATTCCTATTCGTGCTCTAATTTCGTAATTTGAACTTC
cagtatttgaaattttataataCAAAGTGAAATGTGGGCCCCCTCAGGTT
CTAAGTCTTAAAACGACTCCCCGTACCAAATTCTTTTCCAACCCAAAGAG
ATAACTTGATCTCTTGAAGAGTTGTAATCAGAGAGACAGAGTGGAAAATA
TGAATAAGCTCCCTTTGTATTTCCTAACTGATGACCAATACACGAGAAGA
GGTCGCCCTGCCAAGTCTTTGTTGGATCAAGTTGTTGGTCATAAAATGAT
TTCTATTAGTCAATTTTGTTCTCTTGCCTTANNACCAACCATTTGATTTG
AAAGAATGACCCTCTCGTCTGAAGGTCCATATTTTGTAtgtttttagaaa
taattttgTTGTTACACATATACATACACGCACAGACAATTTATTTGAAT
GGActattttgatttcaattcGATCAAATCATAGATATTTATACATAGTG
GGCagcacccctccaacccccacctgaataaagtcacccccacctgcata
gggtaacccccacctgaaaaatgctaccgacccaacccccaccttctTGG
ACCACCCCCACCTAAATTCTGAAAAgattccaacccccacctgaaaaaag
tcacccccacctgcatagggtaacccccacctgaaaaatgctaccgaccc
aacccccaccttctTGGACCACCCCCACCTAAATTCTGAAAAgattccaa
cccccacctgaaaaaggtttttaactgttttaacaattttgagggtaagc
aAGGTTAATcacttgaaaataatttctatgCTTTTTATACTTCATACATC
TTTTGTTATATTATTAGACTTGGGAAGAaatagatttttactgtcaatgT
ATATGTTTATGATGAGCAGGgttgaaagaaagtttttgagtcaaaataag
aaaactagtaaataaactctccaacccccacctgaaaaaagtcaccccca
cctgTATAGGGTAACCCCCACCTAAGATTTGAGAGCAGGCTAACCCCCAC
ctgcttaaatttttctgaaaacctccaaccccccccctaaaGTTAGGGGG
GGTTCCCACTATGTTATATCAGTACGtctatttatcatttttcttaacTT
CGTACCATTGATTAATTTGTAGATATTAGAGATTTTTTACGAGGAAGATA
ATCC Run BLAST on NCBI transcript from alignment at sc0000408:156660..159509+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022210 ID=TCONS_00022210|Name=TCONS_00022210|organism=Clytia hemisphaerica|type=transcript|length=2850bp|location=Sequence derived from alignment at sc0000408:156660..159509+ (Clytia hemisphaerica)
TTTAGCTACAGATTCATTATTCGCCAATATTCTTGAACAATTAGTGGCTG
TCGGATATTCTATAGACTGTTCATTCACGCAAATCAAGTTCGATAAAcgc
attattttcaaaagacaaaagCCAGTTCACAGAGCGAAGTTTATGTGTTT
AAATACGAAATTTCATTGTGTGCGATTGGTCAATGCCCCAGATGAAATTA
AAGAGGTAATACAAAATATTAAATATCcaataaaaatttattgaaaattt
tgggTATTTAAGAATTTAAAAATTCGAATGAAAACTTTTCACAACCTCGA
CTGCAAAACACTGACCAGATGGAGTTAATTATATTTTGAAACATATTTTG
AAGAGCCTCTAAGTAAAGGCTATTTGATTCAACGCAGTATTTTCTTGTTT
GATAGGCTACTGAGGCAATGGTCAAAGAAATGAAACTTGATATGAAGAAA
ATCAAACGAGACGCACCCGGCTGCTCACTCGATGTTAGTACCGATAGATT
TTCTCTTCACTCTTGATATTAGTCTGCAGTCCGTTCAACCCCAGCTGGAT
TATTGtcattttccaatgtttctcttttttcaaaggcaaaagaaaattaa
aggaaggaaaagttttgaaatcccTAACAGGTAAAAATACTCAGGTAAGT
TACCTGAAAAttacaataattttttaaggccattagccggcagaaaatga
ggaAACCAATGATTTACTGCGAAGgataccatgatgaagtttcgctgtag
gggtgttacctaattgtttacgcccttattttcgcgaaaaaccacaaaaa
ctaaaaaatgctgtcatcagcaaaacttgtttttttaaatatctccagtt
tggctaatggtaaaaacatgaaatttggaccaacgttgaatatcattaaa
aggatcattttgcaaaaataaatttttcagatAAATAATAATTGAACAGA
GAAACACAGATGTGATCAACGTTTCATCAAGTAGGAAATATAGATATCTT
TTCCCCATTGGCATTTAGCTCTTTCGTTTTTGTGATAAAGAGTTCTCTCt
gcccagccggcacacaacgtcaaaacaacgtctatttgacattcataacg
tccaaataacgttatttgaacgttaaaacaacgtacAGCCAGGGGTGTAC
GaattatttctttatttcttatGAAGATGCGATTCAAGAACAGAGGAATA
TGGGAACAACTTGAAGGACACGACACCTATGTTGCTCGTTCTCTCCTCGT
TGCTTTACTTGGTAAATACACAGATCTGCAATACCAATTTATTTTATCTG
CTGACTTGACGGAAAAACAAGGAGAGGGAAGTAGTAGTTGGTTTTTCATG
TATGATAATGAACAAGTGACTGCTAAACATCAGTTGAAAGTGGAAAGTCA
AAGCCGTTCACCAAGTCCTAATAGACATTCAGCGCACAATAGCCCGCGTC
ATAGTCCGCGCtcacatcatcatcatcaccgGTCACGTAGCCCTCGTCAA
AGTCCACGTGTTCAAAGAACAATTCATAATGGTAACACAGATGCGATAAA
ACCCTTCTCAGGTTCTGAAAGACATTTGCTACCACCGGCATTAGTTTCTG
AACCTCCACCGAGTTATGAAGAAGCGACTAAGAATTGTTGATGTGATATT
TTTTGAATGATTCCTATTCGTGCTCTAATTTCGTAATTTGAACTTCcagt
atttgaaattttataataCAAAGTGAAATGTGGGCCCCCTCAGGTTCTAA
GTCTTAAAACGACTCCCCGTACCAAATTCTTTTCCAACCCAAAGAGATAA
CTTGATCTCTTGAAGAGTTGTAATCAGAGAGACAGAGTGGAAAATATGAA
TAAGCTCCCTTTGTATTTCCTAACTGATGACCAATACACGAGAAGAGGTC
GCCCTGCCAAGTCTTTGTTGGATCAAGTTGTTGGTCATAAAATGATTTCT
ATTAGTCAATTTTGTTCTCTTGCCTTANNACCAACCATTTGATTTGAAAG
AATGACCCTCTCGTCTGAAGGTCCATATTTTGTAtgtttttagaaataat
tttgTTGTTACACATATACATACACGCACAGACAATTTATTTGAATGGAc
tattttgatttcaattcGATCAAATCATAGATATTTATACATAGTGGGCa
gcacccctccaacccccacctgaataaagtcacccccacctgcatagggt
aacccccacctgaaaaatgctaccgacccaacccccaccttctTGGACCA
CCCCCACCTAAATTCTGAAAAgattccaacccccacctgaaaaaagtcac
ccccacctgcatagggtaacccccacctgaaaaatgctaccgacccaacc
cccaccttctTGGACCACCCCCACCTAAATTCTGAAAAgattccaacccc
cacctgaaaaaggtttttaactgttttaacaattttgagggtaagcaAGG
TTAATcacttgaaaataatttctatgCTTTTTATACTTCATACATCTTTT
GTTATATTATTAGACTTGGGAAGAaatagatttttactgtcaatgTATAT
GTTTATGATGAGCAGGgttgaaagaaagtttttgagtcaaaataagaaaa
ctagtaaataaactctccaacccccacctgaaaaaagtcacccccacctg
TATAGGGTAACCCCCACCTAAGATTTGAGAGCAGGCTAACCCCCACctgc
ttaaatttttctgaaaacctccaaccccccccctaaaGTTAGGGGGGGTT
CCCACTATGTTATATCAGTACGtctatttatcatttttcttaacTTCGTA
CCATTGATTAATTTGTAGATATTAGAGATTTTTTACGAGGAAGATAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022210-exon-sc0000408-1491911889:156660..156864 | TCONS_00022210-exon-sc0000408-1491911889:156660..156864 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1510915933:156660..156864 | TCONS_00022210-exon-sc0000408-1510915933:156660..156864 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1575043694:156660..156864 | TCONS_00022210-exon-sc0000408-1575043694:156660..156864 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1491911889:157065..157289 | TCONS_00022210-exon-sc0000408-1491911889:157065..157289 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1510915933:157065..157289 | TCONS_00022210-exon-sc0000408-1510915933:157065..157289 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1575043694:157065..157289 | TCONS_00022210-exon-sc0000408-1575043694:157065..157289 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1491911889:157836..159509 | TCONS_00022210-exon-sc0000408-1491911889:157836..159509 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1510915933:157836..159509 | TCONS_00022210-exon-sc0000408-1510915933:157836..159509 | Clytia hemisphaerica | exon |
| TCONS_00022210-exon-sc0000408-1575043694:157836..159509 | TCONS_00022210-exon-sc0000408-1575043694:157836..159509 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000408 | supercontig | sc0000408:156660..159509 + |
Blast
The following BLAST results are available for this feature:
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