TCONS_00022222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022222
Unique NameTCONS_00022222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022222 ID=TCONS_00022222|Name=TCONS_00022222|organism=Clytia hemisphaerica|type=transcript|length=2524bp
ACTTAagtcatgaaaaaaatttttttttcataacgaAATTTTTATTAACG
AAGATTTGATGTCATAGAAGAATCATATTAATATTTAAGAGAGGACGACA
CAAGACGAACACGAGACTAACTCCAAAAAGGCAAGGTTGTATAATTCAAC
AACACAGAATTCATCTAACCAACTCATAACAAATTCAACTACCACAACAG
CAGCAAGAAAAATGAATGTTCCAGACGAGCTCACCGCTACAGAATACTTG
AATCAGCTATTGCAAGACAAAACTACTGTCTCAAAAATGCCGAAGATCTT
TTTGCATTCTGAAAGACTTCTAGATGAAGaaattagTCGTGTACGAAATG
ACATATTTTGCCCGTCAAGCTTCTTGATGTCACTGCCAAAACCCTCTGGA
CCTCCTGTGAAGTTAACTGAAAAAGTTTATGCAAAAGTCAAAGATCACCC
TAAATTCAACTTTGTTGGTCGTATTATTGGTCCACGTGGTCTCACCTTAC
GTCAAGTTGAGCAAGAAACAGGAGGGAAGCTTCTTGTTAGAGGAAGAGGT
TCAATGAAAGACAAGAAAGTGGAGGAAGAAAAACGTGGACAACCAAACTA
TGAGCATTTGGATGAGGATCTTCATGTTTTGATAATGGTTGAAGATACTG
AAGATCGTGCTcgaatgaaattgaaaaaagctgTTGAAGAAGTTAACTTC
CTCCTTACACCTCCAAAAGACGGAGAAGATGCGATAAAAAAGAAGCAACT
TCAGGATCTTGCAATTTTAAATGGTACTTACAGACACCCCAACAGTGAGG
CAAGCCCTCCTGCTGCTGCCACAGTCACTCAAAATGGTGtatCTCCAACT
GGGCTGTTAAGTTTTCCGAGTCCTTCACCAGTCGTTCCACAAAACAATAC
ATCATTTCCAGCCATCCGAAACTCAGCAGGTGAGCCTGTTCATTACGACA
AcatgattttccgattttgtgATTTCGGTATAAATCCAACAGTGCCTACA
CAACAACATCCATCTTCGCGATCGTTCGGTTGTTGCTCTCCAACTGTGTT
TTAAGGAATCTTTTTGTGCAATGTGTTACATCAGGGTGgactttttgagt
ttggttttcaaatttgaaatttaattatGTGTGGTGTATTAAACCTAAAC
TTCAAAGTTTGCTACTAATCACTAGaacttttttaacattttggtaATTT
GAATGGTGCATTATAAATGTCAATAAGAATTTATGAAGGGATAACTAATA
ATTTATTGCAATAACCAAAATTAACTCTAAATTATAAAATCAGCATAACA
TTTTTGAGTTCTTAACAAAACTAAAGACATTAGTTGTATATAGTTGGACT
GGACCTTATCAACTTTTGTGGAACCTCCAATAAAACTAAAAAGCTACTGA
CCATAATGTTAAACAACTTTACCAAATAAAACTATTTGTCTGAATCTAAT
TTGATTTCAGCAGCTGCACTGCAAGGCTTATATCCTCTTGAAACTTTCGC
TCAAAGAGGCACACCGGGTGCTTCGTTTCTGGATTTTACCAATCTGGATG
GCAGCTCGCTAATTTTGAGTAAAAGATGATAATTCATTCCAAACCGGCTG
TAACAACTACtgtccaaaaatttaaaaactgttttgttgtgatttggttt
atgtttttttattgcGATATtcgcaaaataaatttcaaattaaatttttg
taaatccAATTTTATTGTATGATAATTTTATACGTTTGAAGTTTAGTTCA
AGATTAATCTTGATACTAATTTTAACTTATATTTAATATAAATAACACAT
AAACGCTATTTTTACTAACTATTTACTTTTTTACcatttaataataataa
aatactcAAATTGTGTCTTTTTTAACGACGTTTAAAATGATAAATTGGAA
AACTTGTATTTACTATTTATTCtgcaatttttatattttttaaactaact
ttcattattttgttattttttgaaagCAATCTTGAGGAAACTGCATACAT
TTTAGGGCAAGAAGGGTTCAACACTTACagtacattacattacattctTT
ATGCAAGTTTCAGAAATCCcttgccttaaaaaatcttgaatttttccTGT
GGATagtattatttttaaaaaacagaTTTCTCTGAATAATGTAGTAGAAC
TtactattttcatttcaataatattttatttgacGCTCAAAAGTAAAGAA
TTTTATAGAAATATGAAGAAGTTtatgaatttgataaaaaacaaaaattc
taaCAACTCATGCTAAGAAAGGTCATGACATTTCAACATGGAACCGACCA
TGAAATGCTActaataacaacaacaacagaaatGTATTGACCCAGAATAA
ACCCTGCTAACATCACGACTACTTATGTCATCCAACCAATCAACTGAAGA
GAGAATTATTACAGAAAACTGagcaattttattattttatatgaAGATAC
TTTTaggtatttatttatttagcatAGATTATGTgaagagaaataaagaa
aaaatgaattttaaaatatttttg
Run BLAST on NCBI

transcript from alignment at sc0000408:180092..184078+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022222 ID=TCONS_00022222|Name=TCONS_00022222|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at sc0000408:180092..184078+ (Clytia hemisphaerica)
ACTTAagtcatgaaaaaaatttttttttcataacgaAATTTTTATTAACG
AAGATTTGATGTCATAGAAGAATCATATTAATATTTAAGAGAGGcaagaa
agaaatatttttgtatgcGCTGACCCCCGTCTCAAATCAGTGTTCTTCTA
CTAACAAATCAAGCTGGCGAGAATTTCTGATCACTCACAAAATACCTTGC
CTCTTGACAGGACGACACAAGACGAACACGAGACTAACTCCAAAAAGGCA
AGGTTGTATAATTCAACAACACAGAATTCATCTAACCAACTCATAACAAA
TTCAACTACCACAACAGCAGCAAGAAAAATGAATGTTCCAGACGAGCTCA
CCGCTACAGAATACTTGAATCAGCTATTGCAAGACAAAACTACTGTCTCA
AAAATGCCGAAGATCTTTTTGCATTCTGAAAGACTTCTAGATGAAGGTGA
GTTAGCTGTGATTACTCTTTTGATTCTAgtaaaaccttttgaaaaatgtC
CCTGACAAAATGCCCATTGTCTAAGAAAGCTGATTAAAATCAATCTCTTT
TTCGACAGACAACTTCCTTAAGGTTATTTAATTAATTTTGTAGTAAGAGG
TTTACCATAATGACGTAGAAATTACATCTCTCTGCATACTGCAAGCATGT
TTTTGTCAGCAGCTTGATTAAAAATGTCTGTTTTGACTTTTGATTTATAT
TagatatcaatgttttgattcaatttttcaatattcaTAACATTGTTTGT
agtttttgtaataaaaatttgaatatttcttaGAAGAGCTACATGTTATA
TCCTGATTTTGTTCGATTTGGGTTATTTCCTTTTACTATCACTTATTATT
GATACACaccttttttatagaaattagTCGTGTACGAAATGACATATTTT
GCCCGTCAAGCTTCTTGATGTCACTGCCAAAACCCTCTGGACCTCCTGTG
AAGTTAACTGAAAAAGTTTATGCAAAAGTCAAAGATCACCCTAAAGTAAG
TAAATATTGTAGTGTTTCATTGTGCCAGTTCTAATATTGATCAGGCCCCA
TTTCAAATACCCCTGTTGAAGTGGGTTGAAATTAACATATGAAATTTCTT
TCCGGCCATTATGGAACACGTGGTGAAGGAGTGAGTGCTCTTGAGAAAAT
GTAAGTCACCATTGACGGCCTAAATAAAGTGATGTGAGTAAAATTGAGCT
TTTCAAATGCTAGAAATAGTTGTTGCCCAACTCTGTTGTTTCAGATATTG
TCTGAAAATACTTTTCCCATGTAAATTGCTAAAAATTTCCCCGGAAAAGT
CGATTGTGCGCTGTAGAGGGATTAATCATCAAAATTCTATTCACACTGAT
AGTGATAACATAGCCTTTCATAATATAGCCTTTCATAATTCAGATTACTT
CTGCAAGAACTGTTAGCGGTAAAATAATGATCAGTCCGAATTCTTAAAAG
GCAGGGTTGCGTCCCCTAAGCTTTATCCAGGCTAATTTTTTGGATATGAA
TGTAACATTTCTTTATTCtataaatttcatgttttattttaAGTTCAACT
TTGTTGGTCGTATTATTGGTCCACGTGGTCTCACCTTACGTCAAGTTGAG
CAAGAAACAGGAGGGAAGCTTCTTGTTAGAGGAAGAGGTTCAATGAAAGA
CAAGAAAGTGGAGGAAGAAAAACGTGGACAACCAAACTATGAGCATTTGG
ATGAGGATCTTCATGTTTTGATAATGGTTGAAGATACTGAAGATCGTGCT
cgaatgaaattgaaaaaagctgTTGAAGAAGTTAACTTCCTCCTTACACC
TCCAgtaagaaaattatgtttttgaatttGGAATCATTATATACCAAACA
AATCTCAAGTGCTCTAAAATTCTTTGCATATAAGTTGATATGCATTCAGC
AACTTTGTTTATGTGTTTTACAGGCAGTACAGGGTATTTGAGTAAGGGAG
CTCAATTTTGTTTTCCTCATAATTTCAGAAAGACGGAGAAGATGCGATAA
AAAAGAAGCAACTTCAGGATCTTGCAATTTTAAATGGTACTTACAGACAC
CCCAACAGTGAGGCAAGCCCTCCTGCTGCTGCCACAGTCACTCAAAATGG
TGGTAAGCAatgttttcaattattttgaagttaatatgataattatgaaa
aatcaaACCCCAAGCAGATCAGGCTATTTTTGTTTCCTCTTCTGACCTGG
taagatgttttgtttttaccCAGAACTCCTTTTTATCCGGGTGGAACATT
TTGAATAAGAGGATAagtttttactttaaaattttgaaaatttttctttc
agtatCTCCAACTGGGCTGTTAAGTTTTCCGAGTCCTTCACCAGTCGTTC
CACAAAACAATACATCATTTCCAGCCATCCGAAACTCAGCAGGTGAGCCT
GTTCATTACGACAAcatgattttccgattttgtgATTTCGGTATAAATCC
AACAGTGCCTACACAACAACATCCATCTTCGCGATCGTTCGGTTGTTGCT
CTCCAACTGTGTTTTAAGGAATCTTTTTGTGCAATGTGTTACATCAGGGT
GgactttttgagtttggttttcaaatttgaaatttaattatGTGTGGTGT
ATTAAACCTAAACTTCAAAGTTTGCTACTAATCACTAGaacttttttaac
attttggtaATTTGAATGGTGCATTATAAATGTCAATAAGAATTTATGAA
GGGATAACTAATAATTTATTGCAATAACCAAAATTAACTCTAAATTATAA
AATCAGCATAACATTTTTGAGTTCTTAACAAAACTAAAGACATTAGTTGT
ATATAGTTGGACTGGACCTTATCAACTTTTGTGGAACCTCCAATAAAACT
AAAAAGCTACTGACCATAATGTTAAACAACTTTACCAAATAAAACTATTT
GTCTGAATCTAATTTGATTTCAGCAGCTGCACTGCAAGGCTTATATCCTC
TTGAAACTTTCGCTCAAAGAGGCACACCGGGTGCTTCGTTTCTGGATTTT
ACCAATCTGGATGGCAGCTCGCTAATTTTGAGTAAAAGATGATAATTCAT
TCCAAACCGGCTGTAACAACTACtgtccaaaaatttaaaaactgttttgt
tgtgatttggtttatgtttttttattgcGATATtcgcaaaataaatttca
aattaaatttttgtaaatccAATTTTATTGTATGATAATTTTATACGTTT
GAAGTTTAGTTCAAGATTAATCTTGATACTAATTTTAACTTATATTTAAT
ATAAATAACACATAAACGCTATTTTTACTAACTATTTACTTTTTTACcat
ttaataataataaaatactcAAATTGTGTCTTTTTTAACGACGTTTAAAA
TGATAAATTGGAAAACTTGTATTTACTATTTATTCtgcaatttttatatt
ttttaaactaactttcattattttgttattttttgaaagCAATCTTGAGG
AAACTGCATACATTTTAGGGCAAGAAGGGTTCAACACTTACagtacatta
cattacattctTTATGCAAGTTTCAGAAATCCcttgccttaaaaaatctt
gaatttttccTGTGGATagtattatttttaaaaaacagaTTTCTCTGAAT
AATGTAGTAGAACTtactattttcatttcaataatattttatttgacGCT
CAAAAGTAAAGAATTTTATAGAAATATGAAGAAGTTtatgaatttgataa
aaaacaaaaattctaaCAACTCATGCTAAGAAAGGTCATGACATTTCAAC
ATGGAACCGACCATGAAATGCTActaataacaacaacaacagaaatGTAT
TGACCCAGAATAAACCCTGCTAACATCACGACTACTTATGTCATCCAACC
AATCAACTGAAGAGAGAATTATTACAGAAAACTGagcaattttattattt
tatatgaAGATACTTTTaggtatttatttatttagcatAGATTATGTgaa
gagaaataaagaaaaaatgaattttaaaatatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012455XLOC_012455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022222-exon-sc0000408-1491911889:180092..180184TCONS_00022222-exon-sc0000408-1491911889:180092..180184Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1510915933:180092..180184TCONS_00022222-exon-sc0000408-1510915933:180092..180184Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1575043694:180092..180184TCONS_00022222-exon-sc0000408-1575043694:180092..180184Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1491911889:180302..180537TCONS_00022222-exon-sc0000408-1491911889:180302..180537Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1510915933:180302..180537TCONS_00022222-exon-sc0000408-1510915933:180302..180537Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1575043694:180302..180537TCONS_00022222-exon-sc0000408-1575043694:180302..180537Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1491911889:180962..181086TCONS_00022222-exon-sc0000408-1491911889:180962..181086Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1510915933:180962..181086TCONS_00022222-exon-sc0000408-1510915933:180962..181086Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1575043694:180962..181086TCONS_00022222-exon-sc0000408-1575043694:180962..181086Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1491911889:181635..181895TCONS_00022222-exon-sc0000408-1491911889:181635..181895Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1510915933:181635..181895TCONS_00022222-exon-sc0000408-1510915933:181635..181895Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1575043694:181635..181895TCONS_00022222-exon-sc0000408-1575043694:181635..181895Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1491911889:182070..182193TCONS_00022222-exon-sc0000408-1491911889:182070..182193Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1510915933:182070..182193TCONS_00022222-exon-sc0000408-1510915933:182070..182193Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1575043694:182070..182193TCONS_00022222-exon-sc0000408-1575043694:182070..182193Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1491911889:182394..184078TCONS_00022222-exon-sc0000408-1491911889:182394..184078Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1510915933:182394..184078TCONS_00022222-exon-sc0000408-1510915933:182394..184078Clytia hemisphaericaexon
TCONS_00022222-exon-sc0000408-1575043694:182394..184078TCONS_00022222-exon-sc0000408-1575043694:182394..184078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:180092..184078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.22212	4.6683	33.6723	43.0301	317.035	236.038	367.211	361.935	136.886	154.031	62.5552	79.9964	4.45662	3.68554	2.20934	1.56196	10.388	15.2318	6.75387	8.13701	28.07	25.4736	30.8749	32.5189	7.35006	9.1592	2.40705	2.37688	35.9509	34.7113
Blast
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BLAST of TCONS_00022222 vs. Swiss-Prot (Human)
Match: QKI (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.387e-65
Identity = 113/193 (58.55%), Postives = 142/193 (73.58%), Query Frame = 2 
Query:  242 EYLNQLLQDKTTVSKMPK---IFLHSERLLDEEISRVRNDIF------CPSSFLMSLPKPSGPPVKLTEKVYAKVKDHPKFNFVGRIIGPRGLTLRQVEQETGGKLLVRGRGSMKDKKVEEEKRGQPNYEHLDEDLHVLIMVEDTEDRARMKLKKAVEEVNFLLTPPKDGEDAIKKKQLQDLAILNGTYRHPN 793
            +YL QL+ DK  +S +P    IF H ERLLDEEISRVR D++              LP   GP V+L EK+Y  VK++P FNFVGRI+GPRGLT +Q+E ETG K++VRG+GSM+DKK EE+ RG+PN+EHL+EDLHVLI VED ++RA +KLK+AVEEV  LL P  +GED++KK QL +LAILNGTYR  N
Sbjct:   16 DYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDAN 208
The following BLAST results are available for this feature:
BLAST of TCONS_00022222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QKI3.387e-6558.55Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
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