TCONS_00022233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022233
Unique NameTCONS_00022233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022233 ID=TCONS_00022233|Name=TCONS_00022233|organism=Clytia hemisphaerica|type=transcript|length=3036bp
aactacttcctattcttaaaaaaatcatttaatgtctcaagggatatgat
caccatggaaattgtttgaatacgaggcaagtgatgttcatgacgtaatt
tatgaaaaggtctattacaaaTGTATAACAGCTGTTAGGAAAACATTTTA
ATTCGTTTCCTACAACACTGACCACAACAGTTATCAGGTACTGtccgaaa
aaagatcttgtccAAAGATGGATAAACAATGAAGAAAAATTGGGACAGTA
AATAATTTAATGAATACCATATAGGTTCTTCTTTCTCtatgaagtaaaaa
tttaatattttcctAATAAAATCTATACcataaaaatctattttttttgc
aaaattaaattccataTAATTTATAAACCAACAAGTGTTGAAAATCTTAT
CCTTTGTACAATAGTAATAATAATTTTTGACACTCTCTTAGCTCTCTGAT
ATAAAGTGCGTCTGCGAAAAACGgaatataccttaagggaacttttttgg
cctgaactaattttggcaggcagcaaatatcctaaaatttttaattttgg
cgggaactaattttggcgaatggcagcgtaaatctgttctattttgcctt
attttgagcaattttgatgaatttcaggggttatttaggcaaggaaacaa
aaaatttaattttggcaggaactaattttggagaatttcgtctaaattca
ccaaatccgccaaaattagttcccgccaaaattagttcccttaaggtagt
ttcATCGATATAAGAGCCATCGCTTGAATTACATGAACGATATTTAATAT
CAATTCTATTTCTGTATTTTCTACAGACACATTGCGCAgcgtgtccgaaa
aaaaataatcctaatatttaaattttccggAAGCACCATATACTATAATA
ATTTGataataaattttttgatttacacGTATAATATAtatgataatttt
ataaaaaatttggtAATTTAGGTAATTAAAAAGTATAATAAATCATCTat
agtttctttaaaaaaatcattaaaccGAAAAGAAATTAAGCTACCAACAC
AAATTTAAACTAATAATCACTAAATGCACTGACAAAAGACTACAAAGGtt
aattctttgaaaaattagtGACCGAATTGGGTCATAGAAAGATTAGcttt
agttttgTTTTCCAAATGAGTGAAATAAGGGTGTATTCCAGTACGTTATG
CGCATTTAAAACTACAAAGTCATAAATCCAAAACTAGCGAACTCAACATT
CGAGATCGAATCATACACATGTTTTCTACAAGAGCCTGGTTTAAAAGAAG
ATggaagaatatttaaaaaaacacaCCAGAATTCGAAGGTTTCCTCCTTG
AAAGGGGTCTCTGGAATCTAGAATTACCTGGATGTATCATGTGAtgttac
ataatttttttttttcttcaagaaaGTTAGTCTTTAGCGGCTATGAATTA
ATTGTTAAAAACATTTATTGTTAGTAGAATTTTTCGCTTTTCTTTTAACG
AAAATCAGTACGTCCTTTCTTGTTCGTAAAAGCCAAGAAAAATTTCGTTT
TAAATCTTATCTAGATACAACAAagttaagtttttttattgaagttaaaa
aatattgatgtAACAGATTGAtaagatcaaaaaatattccaatgttttta
tttctttccgAAAAAATCTCCTGATTCCAATGTCGCTTGTGGTTTCAGCA
GATGGTTTTTAATaccattttttctttcttcctaTCACGCCCTCAAGAAG
AAAAGCCGttacattttttcaagaaagaGAAGCGAACCAGGGTTAAACAG
ACTACGTATTCAAACTAAACTGAACTAATCTAATATAAAATTCTAGTCAA
ATATTTATGTAGAGGGACTAGAAACTTTAAACTTGACTTAAAAAGTTTCG
GTTTCTAGacttctaaaaatataaaaataaaggtTGCATTGTGTAAAAAT
ACGAATTATATGTATAGTTATAAAGATTctgttaaaattgttttttaaaa
cgAAAATTAAAACACATAGTGTCATCTCATAGACACGTGTTTGTGGGGTA
TTATTTTTGTCGTGGTCATGAGGTAAATCCATGAAATCCGTGAATGTAAA
CTGTCAATGTATGGTAGTGTGTGTGAACACAGTATTCGATTAATCAATTA
GTCGATCCATTCCCCAAGAATTAAATCTGTTATTATaatggaaaaggaaa
atattaaaaacaacaaaaaatgattAGTTTGTAAGCAAATAAAGTAAATC
ATAGAGTGGAGAGGAAATTAATGGGGCTTAGGGGGGAACggatgaaaatt
aaaacatgaaAGCTATCACTTTGTCATCAGCAGGAAAGTCAGGATTCTTT
GGAGAGAAAACATGACTTAGAGCGAAGATAAACATTATGTGAACTTATAA
ACATAACTAAAGAGTTATTGACCCCACACTAAAACTCATCAGGGATCCAT
GTCAGTATTCACAGTTTAAAGGGAAACAGTGTCAATCAATTAAAAAACTG
TTCAATTAGAAATATAGAGGGTTATTTTGGGGGCATGGGTAAGATTTGTA
AAGCCTCTTTATCTCGATGTATCAGGCAAGGTGCCTAAAGTTTTTTGAAC
AGATAAGGAGTCTTTTTTGGGGAAAGAAAATTTGTCGCTTTCATTCATGT
CTGGAGATAAAGAGACTTCATGGTGGTGTCTAAGAAAGATTGGGTCGGTA
TATTCAACTATGTCTTTCTTAGATACCGGTGTATTATACAGTAACAAACA
TAAAACGAAAATAAATGATTACGCACCGATTAGAAAGTAACAGTGAATTT
TAAGAGAGTTAGGATGGTAGAAGTTAGCTTGTAGCCTGTTTGTAGGGATG
ATACATCCTTCTCACTTTAGCAATGTGTGCTTTTAGTTGACCTGTACAAT
AACATTAACGGAGTAAGTAAgtgtgtttgaaaaaaaaaacggatCTCACT
AGCCAGGGAACAATTAATGTTTTTAAAGCAAATAGTTATCAAATTCCCAA
AGTCATTAATTTGGCTTCAAGTAATGGTCGGCATAA
Run BLAST on NCBI

transcript from alignment at sc0000408:185434..189119-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022233 ID=TCONS_00022233|Name=TCONS_00022233|organism=Clytia hemisphaerica|type=transcript|length=3686bp|location=Sequence derived from alignment at sc0000408:185434..189119- (Clytia hemisphaerica)
AACTACTTCCTATTCTTAAAAAAATCATTTAATGTCTCAAGGGATATGAT
CACCATGGAAATTGTTTGAATACGAGGCAAGTGATGTTCATGACGTAATT
TATGAAAAGGTCTATTACAAATGTATAACAGCTGTTAGGAAAACATTTTA
ATTCGTTTCCTACAACACTGACCACAACAGTTATCAGGTACTGTCCGAAA
AAAGATCTTGTCCAAAGATGGATAAACAATGAAGAAAAATTGGGACAGTA
AATAATTTAATGAATACCATATAGGTTCTTCTTTCTCTATGAAGTAAAAA
TTTAATATTTTCCTAATAAAATCTATACCATAAAAATCTATTTTTTTTGC
AAAATTAAATTCCATATAATTTATAAACCAACAAGTGTTGAAAATCTTAT
CCTTTGTACAATAGTAATAATAATTTTTGACACTCTCTTAGCTCTCTGAT
ATAAAGTGCGTCTGCGAAAAACGGAATATACCTTAAGGGAACTTTTTTGG
CCTGAACTAATTTTGGCAGGCAGCAAATATCCTAAAATTTTTAATTTTGG
CGGGAACTAATTTTGGCGAATGGCAGCGTAAATCTGTTCTATTTTGCCTT
ATTTTGAGCAATTTTGATGAATTTCAGGGGTTATTTAGGCAAGGAAACAA
AAAATTTAATTTTGGCAGGAACTAATTTTGGAGAATTTCGTCTAAATTCA
CCAAATCCGCCAAAATTAGTTCCCGCCAAAATTAGTTCCCTTAAGGTAGT
TTCATCGATATAAGAGCCATCGCTTGAATTACATGAACGATATTTAATAT
CAATTCTATTTCTGTATTTTCTACAGACACATTGCGCAGCGTGTCCGAAA
AAAAATAATCCTAATATTTAAATTTTCCGGAAGCACCATATACTATAATA
ATTTGATAATAAATTTTTTGATTTACACGTATAATATATATGATAATTTT
ATAAAAAATTTGGTAATTTAGGTAATTAAAAAGTATAATAAATCATCTAT
AGTTTCTTTAAAAAAATCATTAAACCGAAAAGAAATTAAGCTACCAACAC
AAATTTAAACTAATAATCACTAAATGCACTGACAAAAGACTACAAAGGTT
AATTCTTTGAAAAATTAGTGACCGAATTGGGTCATAGAAAGATTAGCATT
AGTTTTGTTTTCAAAATGAGTGAAATAAGGGTGTATTCCAGTACGTTATG
CGCATTTAGAACTACAAAGTCATAAATCCAAAACTAGCGAACTCAACATT
CGAGATCGAATCATACACATGTTTTCTATAAGAGCCTCGTTTAAAAGAAG
ATGGAAGAATATTAAAAAACAAACACCAGAATTCGAAGGTTTCCTCCTTG
AAAGGGGTCTCTGGAATCTAGAATTACCTGGATGTATCATGTGATGTTGC
ATATTTTTTTTTTTCTTCAAGAAAGTTAGTCTTTAGCGGCTATGAATTAA
TTGTTAAAAACATTTATTGTTAGTAGAATTTTTCGCTTTTCTTTTAACGA
AAATCAGTACGTCCTTTCTTGTTCGTAAAAGCCAAGAAAAATTTCGTTTT
AAATCTTATCTAGATACAACGCAGTTAAGTTTTTTTTTGAAGTTAAAAAA
TATTGATGTAACAGATTGATAAGATCAAAAAATATTCCAATGTTTTTATT
TCTTTCCGAAAAAATCTCCTGATTCCAATGTCGCTTGTGGTTTCAGCAGA
TGGTTNTTTCCAATGATACCAAATTTATAAAGATTGAAGAATTCCTTCAA
AAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTT
AGTTTTGTTTTCCAAATGAGTGAAATAAGGGTGTATTCCAGTACGTTATG
CGCATTTAAAACTACAAAGTCATAAATCCAAAACTAGCGAACTCAACATT
CGAGATCGAATCATACACATGTTTTCTACAAGAGCCTGGTTTAAAAGAAG
ATGGAAGAATATTTAAAAAAACACACCAGAATTCGAAGGTTTCCTCCTTG
AAAGGGGTCTCTGGAATCTAGAATTACCTGGATGTATCATGTGATGTTAC
ATAATTTTTTTTTTTCTTCAAGAAAGTTAGTCTTTAGCGGCTATGAATTA
ATTGTTAAAAACATTTATTGTTAGTAGAATTTTTCGCTTTTCTTTTAACG
AAAATCAGTACGTCCTTTCTTGTTCGTAAAAGCCAAGAAAAATTTCGTTT
TAAATCTTATCTAGATACAACAAAGTTAAGTTTTTTTATTGAAGTTAAAA
AATATTGATGTAACAGATTGATAAGATCAAAAAATATTCCAATGTTTTTA
TTTCTTTCCGAAAAAATCTCCTGATTCCAATGTCGCTTGTGGTTTCAGCA
GATGGTTTTTAATACCATTTTTTCTTTCTTCCTATCACGCCCTCAAGAAG
AAAAGCCGTTACATTTTTTCAAGAAAGAGAAGCGAACCAGGGTTAAACAG
ACTACGTATTCAAACTAAACTGAACTAATCTAATATAAAATTCTAGTCAA
ATATTTATGTAGAGGGACTAGAAACTTTAAACTTGACTTAAAAAGTTTCG
GTTTCTAGACTTCTAAAAATATAAAAATAAAGGTTGCATTGTGTAAAAAT
ACGAATTATATGTATAGTTATAAAGATTCTGTTAAAATTGTTTTTTAAAA
CGAAAATTAAAACACATAGTGTCATCTCATAGACACGTGTTTGTGGGGTA
TTATTTTTGTCGTGGTCATGAGGTAAATCCATGAAATCCGTGAATGTAAA
CTGTCAATGTATGGTAGTGTGTGTGAACACAGTATTCGATTAATCAATTA
GTCGATCCATTCCCCAAGAATTAAATCTGTTATTATAATGGAAAAGGAAA
ATATTAAAAACAACAAAAAATGATTAGTTTGTAAGCAAATAAAGTAAATC
ATAGAGTGGAGAGGAAATTAATGGGGCTTAGGGGGGAACGGATGAAAATT
AAAACATGAAAGCTATCACTTTGTCATCAGCAGGAAAGTCAGGATTCTTT
GGAGAGAAAACATGACTTAGAGCGAAGATAAACATTATGTGAACTTATAA
ACATAACTAAAGAGTTATTGACCCCACACTAAAACTCATCAGGGATCCAT
GTCAGTATTCACAGTTTAAAGGGAAACAGTGTCAATCAATTAAAAAACTG
TTCAATTAGAAATATAGAGGGTTATTTTGGGGGCATGGGTAAGATTTGTA
AAGCCTCTTTATCTCGATGTATCAGGCAAGGTGCCTAAAGTTTTTTGAAC
AGATAAGGAGTCTTTTTTGGGGAAAGAAAATTTGTCGCTTTCATTCATGT
CTGGAGATAAAGAGACTTCATGGTGGTGTCTAAGAAAGATTGGGTCGGTA
TATTCAACTATGTCTTTCTTAGATACCGGTGTATTATACAGTAACAAACA
TAAAACGAAAATAAATGATTACGCACCGATTAGAAAGTAACAGTGAATTT
TAAGAGAGTTAGGATGGTAGAAGTTAGCTTGTAGCCTGTTTGTAGGGATG
ATACATCCTTCTCACTTTAGCAATGTGTGCTTTTAGTTGACCTGTACAAT
AACATTAACGGAGTAAGTAAGTGTGTTTGAAAAAAAAAACGGATCTCACT
AGCCAGGGAACAATTAATGTTTTTAAAGCAAATAGTTATCAAATTCCCAA
AGTCATTAATTTGGCTTCAAGTAATGGTCGGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012462XLOC_012462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022233-exon-sc0000408-1575043694:187973..189119TCONS_00022233-exon-sc0000408-1575043694:187973..189119Clytia hemisphaericaexon
TCONS_00022233-exon-sc0000408-1575043694:185434..187322TCONS_00022233-exon-sc0000408-1575043694:185434..187322Clytia hemisphaericaexon
TCONS_00022233-exon-sc0000408-1510915933:187973..189119TCONS_00022233-exon-sc0000408-1510915933:187973..189119Clytia hemisphaericaexon
TCONS_00022233-exon-sc0000408-1510915933:185434..187322TCONS_00022233-exon-sc0000408-1510915933:185434..187322Clytia hemisphaericaexon
TCONS_00022233-exon-sc0000408-1491911889:187973..189119TCONS_00022233-exon-sc0000408-1491911889:187973..189119Clytia hemisphaericaexon
TCONS_00022233-exon-sc0000408-1491911889:185434..187322TCONS_00022233-exon-sc0000408-1491911889:185434..187322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:185434..189119 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0261354	0.0825261	0.0825463	0.579448	0.166512	3.32961	4.14969	1.56891	1.46862	1.15283	1.03825	0.960539	0.903558	0.678797	0.710882	0.749746	1.1132	0	0	2.14097	2.61321	0.563104	1.094	1.13768	1.82619	0	0.526983	2.39875	1.92066
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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