TCONS_00022248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022248
Unique NameTCONS_00022248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022248 ID=TCONS_00022248|Name=TCONS_00022248|organism=Clytia hemisphaerica|type=transcript|length=753bp
CAACCCCAACAAGAGCTAAAATGCAcaaagaattcaaaattgaCAATTCA
CTCAGATTACACCGCAAGTCAAacatGGCTCTTCCTACCATAGTACCAAC
TGAATCAAAATTCGAAAGCTGATGAAAATTCTTCCCTATTTAACAAggTG
AAGAAAGTCAATGGAGTTTCGTGAAAGCGACAAATTCGGTTAACTCAACT
TAAATTTGCGATGTTGTTTTCACATTTCTTTTGCAATATGAATTTTCAGT
CTCAAACACGTTCCCTGTGTCTATATTAGATGGTGACAGCTTCTTGTATA
ATGTGTTCCAAACAGTTGTTATTCCTGGTCATGTCAAATGAGTGCAACTG
TAATCTGCTTTTGAACTGGAACCTCATATACATTCAATGGGACATTGTat
caaaaatcaattaaaagTAATTTATTTATTCTATGAAATGTGTTAAAGTG
GACAAAGTATTTACAATTTATGAATTTCTAAACCAACTTAGAATTTATAT
caatttactttcattttatactatattaattttatcaaaaattttgaagg
atAACCTTTCTTGACACTACTTTAAGGAAATCGATTTTCATAAGAGATTC
TCATTTTCGCTGACTTGTGTCAGTTCCAAGTCACATTTTTAAACATAAgt
attattatattttaaagtaatatcgcattggaaagataattttgaacaGA
TTGATTTGAGTTCGCTAGGTTCGTTGCAATTATTTTTAGCCATTTAACTT
AAC
Run BLAST on NCBI

transcript from alignment at sc0000408:283743..287276-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022248 ID=TCONS_00022248|Name=TCONS_00022248|organism=Clytia hemisphaerica|type=transcript|length=3534bp|location=Sequence derived from alignment at sc0000408:283743..287276- (Clytia hemisphaerica)
CAACCCCAACAAGAGCTAAAATGCACAAAGAATTCAAAATTGACAATTCA
CTCAGATTACACCGCAAGTCAAGTAAGTACCAAATGTCTGTTTAACTATT
TAGATGTTGAAAAATGCCTGTTAAACAGATGCCCGAACTGTAAAAATCAC
AAATATTTGGTCTGTATAGCTCAATACATTGAAGGCTGTGAACAAGAATT
TGTAGCCTTCCGTAAATTCTTAAAAAAGTCATTCGAACTTTTTTAATGTT
GCTTGAGATTTAAATGGAGTTTGTGGTAACAATTCAGTAATGAGAAATTT
TAATATTTTTTTAGACATGGCTCTTCCTACCATAGTACCAACTGAATCAA
AATTCGAAAGCTGATGAAAATTCTTCCCTATTTAACAAGTGTTATTTTTC
AATGCAAAGATATTTGGGCGAATGAACAGGTCAACTATATCATGATATAT
TCCAGTATACTATTGACTAGGTCACAGTGTAACACACTGAGGCGACCGCG
GTCAAATCTTATGAAATTTATGAATTTGTACACCATTTACCGTTTAATAT
GAACNCTTTGTTTTGGTGTTTAAAAATATGTACTTATCAGTCCTAAAAAA
ATACAAATTCGAATATAATGAGGGCAATGAGTCTGGTTAAATGTTAAATG
TTACTATATTTACTATTTACTACTGATGAACTAAACTCAAAAACTAAAAC
TTTACCATAAATTTACATTACGACAATTTAAAAATCTATCTTTAAAAGCA
ACAAAGAAAAAAACATGGCTCAAAGTTTTAAAAACAGAGCTAGTCAGAGC
TTCAATTCAGTAGGTATAGAGCTTTCAAAATTTGAAAACAGACACTGCAT
TGGTTACTACAAGACATACTATTCACACGTTTTTTTCGATTCATGAAAAA
AATAAAGTATTTATCAAAAAAAGGTTCTTATTTTCTTTGGAAATCAATTC
CAACAAACAAGAATCAAGAAACAGTTTTTTGAAAACCATCCCACAGTGTA
ACCATTATCAACCAACTAAACCCACAATCAACAATTTTTCAGAAAATGTT
TTTTTTCCAATATTCTGATACCAATCATGGCTGGAGGCATCATGTGTAGA
GTGACTGTGTGGCATTTCATTGCTTTTAATGATCCTGAATGATCACGATA
CCAAATATCAACCAAACAAAACTGACGCCAAGCCAAATCTGTTGATTAAA
AATTTCCATGAAAATTATAATTGAAACTTATCTCGTAAAATGCTTTTTTC
AACATTCTGGAGGTGTTCAAAGTTAGAGGTATCATATGTAGAGCCAAGCA
ATACATGAAAAGTCATTTGCTATCCCATTTGCCATGAGATATATAAGTCA
ACAGATCAAACAAAAACCAACAAATCATGTCTCTTCACTTTCATGTCACA
TCGTGTTCAGAAAGCAAGAAGAACCATCTTCCTTTATTATGGAGTGTTTT
AAAACTATTGGTAGGTTGTTTGGAAGTAAAGTAACCCACACAGTTTGTTT
TATTTTGAAGATTTAACTTGAAAAAAAACTGCATCTTTCCAGCAGAAACT
CACGTTTCAACCTGCTACATAACATTGGTCAGTCGGGTCTGCTACTAACA
TGTAATAGTTTTATTATAGCCGAGCTGGAGAATCCGTAGGCAGAACTTGT
AACATGTATTATGTGTATAATTATGTCAGTCCACTTGAATCATGATACAG
TACTCACATTTCACTGGATGCATTTTCGCTGTGAAATTATCCGCAAAATT
TTCTGACCGCGTTCTGAGAAGGAGGCTAATAACTAAGATTTTCTTTACTT
ACTATGCTTTAGAAACGTCTGAAATTAGGTTGTGTGTCATTCAGGTAGTT
AGATAAATTTTTTTACTTATATAGGTTCATAAGGGAATAACTGATAGTTT
TTGGATGGGTGTAGCTCAAGAAAGAGAATCCAATAAAACATGCGTACCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTAAAGTGAAAATATTTTTTGATATTCATTCTTTTTTGACAGGTTCA
ACCCCAACAAGAGCTAAAATGCACAAAGAATTCAAAATTGACAATTCACT
CAGATTACACCACAAGTCAAGTAAGTACCGAATGTCTGTTTAACTATTAG
ATGTTGAAAGATGCCTGTTAAACAGATGGCTGAACTGTAAAAATCACAAA
TATTTAGTCTGTATAGCTCAATACATTGAAGGCTGTGAACAAGAATTTGT
AGCCTTCCGTAAATTCTTAAAAAAGTCATTTGATCTTAAAAAAGTCATTC
GAACTTTTTTAATGTTGCTTGAGATTTAAATGGAGTTTGTGGTAACAATT
CAGTAATGAGAAATTCTAATATTTTTTTAGACATTGCTCTTCCAACAATA
GTACCAACTGAATCAAAATTCGAAAGCTGATCCCCATTCAACAAGTAAGT
GTTGTTTTTCAATGCAAAGATATTTGGGCGAATGAACAGGTCAACTATAT
CATGATATATTCCAGTATACTATTGATTAGGGAAGCCATTTCAAGTTCTG
AGGGTTTGGAATTTTTGTTGAAGGACTCCCTAGGGCACTCAGGCAAGATG
GGGATGTGTCGCTGACCAGAGTCCCTTTTATAAGTAAAGAAATACTTGGG
ATATTTCAAAATTCACTAAATTTTTAAAATCAGCTAAAAATTGTCTAGGG
TCCATTTTTGAACACCAGTGACAGTACCCTTCCCCAGGGAAATTCAGACA
TTAAATGTGTACAATAATTGAAACGCTTCAAAACCTTACTGAATTTCCAT
GACATCATTATTTGTTTTAATTTTTAGGGTGAAGAAAGTCAATGGAGTTT
CGTGAAAGCGACAAATTCGGTTAACTCAACTTAAATTTGCGATGTTGTTT
TCACATTTCTTTTGCAATATGAATTTTCAGTCTCAAACACGTTCCCTGTG
TCTATATTAGATGGTGACAGCTTCTTGTATAATGTGTTCCAAACAGTTGT
TATTCCTGGTCATGTCAAATGAGTGCAACTGTAATCTGCTTTTGAACTGG
AACCTCATATACATTCAATGGGACATTGTATCAAAAATCAATTAAAAGTA
ATTTATTTATTCTATGAAATGTGTTAAAGTGGACAAAGTATTTACAATTT
ATGAATTTCTAAACCAACTTAGAATTTATATCAATTTACTTTCATTTTAT
ACTATATTAATTTTATCAAAAATTTTGAAGGATAACCTTTCTTGACACTA
CTTTAAGGAAATCGATTTTCATAAGAGATTCTCATTTTCGCTGACTTGTG
TCAGTTCCAAGTCACATTTTTAAACATAAGTATTATTATATTTTAAAGTA
ATATCGCATTGGAAAGATAATTTTGAACAGATTGATTTGAGTTCGCTAGG
TTCGTTGCAATTATTTTTAGCCATTTAACTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012468XLOC_012468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022248-exon-sc0000408-1575043694:287205..287276TCONS_00022248-exon-sc0000408-1575043694:287205..287276Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1575043694:286889..286962TCONS_00022248-exon-sc0000408-1575043694:286889..286962Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1575043694:283743..284349TCONS_00022248-exon-sc0000408-1575043694:283743..284349Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1510915933:287205..287276TCONS_00022248-exon-sc0000408-1510915933:287205..287276Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1510915933:286889..286962TCONS_00022248-exon-sc0000408-1510915933:286889..286962Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1510915933:283743..284349TCONS_00022248-exon-sc0000408-1510915933:283743..284349Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1491911889:287205..287276TCONS_00022248-exon-sc0000408-1491911889:287205..287276Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1491911889:286889..286962TCONS_00022248-exon-sc0000408-1491911889:286889..286962Clytia hemisphaericaexon
TCONS_00022248-exon-sc0000408-1491911889:283743..284349TCONS_00022248-exon-sc0000408-1491911889:283743..284349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:283743..287276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	11.7592	10.8638	3.96657	3.45509	1.46735	1.93862	0	0.826382	1.42782	0.736687	0	0.0107368	0	0	0	0	0.305282	1.08842	0	0.149281	1.88642	1.97484	1.20808	1.67328	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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