TCONS_00022256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022256
Unique NameTCONS_00022256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022256 ID=TCONS_00022256|Name=TCONS_00022256|organism=Clytia hemisphaerica|type=transcript|length=513bp
CTCATCCCCTGATACTAAGTCATCAGACACGAAGTGTCTGACACATCCCC
AACCTTCTCTATCTGcgatttttatcaatttcattCTAAATGCAATGGCT
TGCTTATCGGATTTCAGGGCCTTCTTTGCTTCTTCTAGCCTGTTCTCATT
TATCGCCTCTTCTATCTCATCCATACTTTCCATTACTTCCTTCGCGTGGT
TATACTGATCCTCATTACcaagatttttaaaatgcaCATGATCGATCTTC
CTCTTTCTCTCAAGCTTGTCGTTAAACTTGGATATTGATGATCTTTTATA
CTCTTTGAAACCATCCAATGCACTTTGAGTCTGGTGTTTGAAGTCTGCTA
GTTCACTAATTGCTGTCTGTAATTGGGCAGCAAGATTTTGGTTTTCTTCT
GTAGCATTTGTTCCAGTCGCCATCTTGAGTACACAACCTTTGCGTTGCAA
TGAGATGACACGTCTTCTACTCTCTCCCTTTTATAGCGCATGCTCAGGAA
TTCGCATGCCGGT
Run BLAST on NCBI

protein sequence of TCONS_00022256-protein

>TCONS_00022256-protein ID=TCONS_00022256-protein|Name=TCONS_00022256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MATGTNATEENQNLAAQLQTAISELADFKHQTQSALDGFKEYKRSSISKF
NDKLERKRKIDHVHFKNLGNEDQYNHAKEVMESMDEIEEAINENRLEEAK
KALKSDKQAIAFRMKLIKIADREGWGCVRHFVSDDLVSGDE
Run BLAST on NCBI

transcript from alignment at sc0000408:162392..162904

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022256 ID=TCONS_00022256|Name=TCONS_00022256|organism=Clytia hemisphaerica|type=transcript|length=513bp|location=Sequence derived from alignment at sc0000408:162392..162904 (Clytia hemisphaerica)
ACCGGCATGCGAATTCCTGAGCATGCGCTATAAAAGGGAGAGAGTAGAAG
ACGTGTCATCTCATTGCAACGCAAAGGTTGTGTACTCAAGATGGCGACTG
GAACAAATGCTACAGAAGAAAACCAAAATCTTGCTGCCCAATTACAGACA
GCAATTAGTGAACTAGCAGACTTCAAACACCAGACTCAAAGTGCATTGGA
TGGTTTCAAAGAGTATAAAAGATCATCAATATCCAAGTTTAACGACAAGC
TTGAGAGAAAGAGGAAGATCGATCATGtgcattttaaaaatcttgGTAAT
GAGGATCAGTATAACCACGCGAAGGAAGTAATGGAAAGTATGGATGAGAT
AGAAGAGGCGATAAATGAGAACAGGCTAGAAGAAGCAAAGAAGGCCCTGA
AATCCGATAAGCAAGCCATTGCATTTAGaatgaaattgataaaaatcgCA
GATAGAGAAGGTTGGGGATGTGTCAGACACTTCGTGTCTGATGACTTAGT
ATCAGGGGATGAG

Coding sequence (CDS) from alignment at sc0000408:162392..162904

>TCONS_00022256 ID=TCONS_00022256|Name=TCONS_00022256|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000408:162392..162904 (Clytia hemisphaerica)
ATGGCGACTGGAACAAATGCTACAGAAGAAAACCAAAATCTTGCTGCCCA
ATTACAGACAGCAATTAGTGAACTAGCAGACTTCAAACACCAGACTCAAA
GTGCATTGGATGGTTTCAAAGAGTATAAAAGATCATCAATATCCAAGTTT
AACGACAAGCTTGAGAGAAAGAGGAAGATCGATCATGtgcattttaaaaa
tcttgGTAATGAGGATCAGTATAACCACGCGAAGGAAGTAATGGAAAGTA
TGGATGAGATAGAAGAGGCGATAAATGAGAACAGGCTAGAAGAAGCAAAG
AAGGCCCTGAAATCCGATAAGCAAGCCATTGCATTTAGaatgaaattgat
aaaaatcgCAGATAGAGAAGGTTGGGGATGTGTCAGACACTTCGTGTCTG
ATGACTTAGTATCAGGGGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012476XLOC_012476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022256-exon-sc0000408-1491911889:162392..162904TCONS_00022256-exon-sc0000408-1491911889:162392..162904Clytia hemisphaericaexon
TCONS_00022256-exon-sc0000408-1510915933:162392..162904TCONS_00022256-exon-sc0000408-1510915933:162392..162904Clytia hemisphaericaexon
TCONS_00022256-exon-sc0000408-1575043694:162392..162904TCONS_00022256-exon-sc0000408-1575043694:162392..162904Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022256-proteinTCONS_00022256-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:162392..162904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.24948	0.383234	0.132137	0	0.157381	0.124364	0.750201	0.702329	0	0.609071	0	0	0.155231	0.0806045	0.0662679	0.213347	0.700869	0.628572	0.372174	0.389453	0	0.165111	0.401428	0.243304	0.250598	0.223653	0.24938	0.341562	0.159938	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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