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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022276 ID=TCONS_00022276|Name=TCONS_00022276|organism=Clytia hemisphaerica|type=transcript|length=2552bp
CACCGagtcaattgaacacaatcaaataattgcaagtcgattgtcaaacg
taatcgaatatattacccaggatttgtcGTTCAATtgctttgattacgtt
cgattgtattctattatgttcgattatgttcaattgattcaattgtattt
agtacggtacttaagcgctcggccgtCCACGCTGAAAAgttctaacagag
tgatccaatttaatttaatcgcaatcaaactcattgaacataatcgtaat
ggaacgaaatcaaagattaatcaaatgaaattgacaatcaatcgaaccaa
tcgaacatagtcaactattatcaattgaaccaatctaaccttacttaaac
acaatcgaacacaatcaaatattacccatgAATTGGCCcttcgattgaga
tttgattacaTTTGACAATCAATCACAATTATTTGATCGCGTTCGATTAT
GTTAGATTGgtttgattgcgatttttgttcgattacgatttttgtttgaa
gttgttcgattgataCCGTCTGgatatgaggattcccatttccgtaaaac
agcgattccccatggttgcaaaatggtggctatgggtaattcctttgttc
ttttgctgttttcttttgttctatgtgaCGTTAAGATGCTTTGTCTGTCT
AAGCTCAAAATACGTCTGTTAATAGATGATTCCATCAAAGAGTGCTCAAT
GATCAGGACCAGAGCTTCATACAGTGTGCAAGAAAAAACTGCACACTGAT
TTATTATTGTTAACCTTATATCAAGaatattttggtaaaatttacaATGG
GCGCTTCAAATAATTTGATACTGTACCTACCAAGTACGGTTACTTCAACA
GTTTTTTGCCTATGGTCATAACAATCTGGAGCTTGATTAATATTGTGtcc
tcaaaaaagtttcaaaaatatatatatattttttaggcTTGTTTTAGTTC
CATAAATGGTGTCACAGACTTGACCCCTTCTATatatattttcagtttta
acagattttattttagtttgataTAAAGATATAAAGCTAGAAGGTAGAAA
GTTAACAACCTTACATGTCAACAATTAAATACCTACAATGGTAGTGTTAA
AACTAAATCATTAATGGTAggtatttgattatttttgatttaaaattcaa
AGGGAAGCATTCAAGTAATGGAAATATTATCACTGGATGAGTATAGTATA
TTGGAAATATTTAAGCATCTTGATCTAGACAGTAGAAGAAATCTCTCCTT
GACATGTAAAAGGTTTCACCAAGCGAACAAAACTATTTTGAATTGGGATG
TACTTGAAGAAGATTTGAAATCCCAGTTGGTAGATTGTGTATGTAATGGA
CATGATAGGGATGATATCCCTTACAATTTCAAATACCAATATAATGTGTC
CATGGTTTTGAAGTATTTTCTACAGACCATTGATGTTTGTAACAGGATAT
CAAAGGAATCTTTACTGAAGGAAGATGATATTGTTCTGAAAGACCTAAAA
TTAAGTTCTGTCGAATTGATTCTAAAAAGGTCATTCAAATGCGAGACACA
TGGATTGGAACATCTGGTGAAAATTGGTAACAGTTCCCacattgatttta
atttttggtacaCATTCAATCCGTCACCTGGAAAGTTCATTTATCTATGC
AATTGCAAACATCCTGATCAAAAATTACGTAGATTGCCTTTCGTGGAGGA
TGTAGTGATGGGTATCATATACGATGAGGTGACAGACCAAACAAAGTTTT
ACATGTGTGACATCACTCGGTTTGATTGGTTCTACACTAAACCTACAGAc
TCAGTTGAGTTTTCAAAAGAGGCATCTTCATTACAACAAATCTGTAAAAC
TCTTTCGCAATTCCTGCAGCTGAATAAGAAAACAAATAAATTGACGCCTG
AGAAGTTGTATCGTATGACTAAGCTGTCTGTGGAGTCGCATTCAGATACA
ATTTTTCCTCTCTTAAGTCACGATTTGGAGAGGACTAAGTACAAATTCCA
ACACGAAGTAGAAAAGCTGAATTTATCCCAATCTGAACTCGTCAAGTTGG
TgcataaattaaaattttttgctgatttaTGTAACTTTCAAAGAAGAGAC
TTTGTACAATCACTCATCGATTTTGTCCAACCTATTGGCAACACTATCAA
CGTTTTTGATTACGGTGAACTCTTAGCTTATGTGCCTGTAGTGAAAAAGG
TGCTTGGAAGAGCAAGTTGTATCAAGAATAGAGAAAATAAATCTGAGCTA
GTTGTTATTAAACTTGAACATAACGTCATTTTGGAATCAACGGTGAATTT
TACTGGATCAAGTCGGTATTCATTGGACTTGAATGGGAAAAAGCTGTTAC
ATTTCTTAGATGGAGCTAAAGATGTTATTCTCTCAGAGGAAAGTGTTTTT
GAAATCAGTGCTGCTTTTGAATTATTTGTTGATAAGAACATCGATCAGAC
ACTATTAGCAACAGTACCAGAGATCAGTTTGGATTTTGTCTTTCAATTAT
TGCGATGTCTTCATTCTAGTAAAGTTTTTGTCCTAGATGAACTCAAGTTA
CA Run BLAST on NCBI transcript from alignment at sc0000410:144313..147340- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022276 ID=TCONS_00022276|Name=TCONS_00022276|organism=Clytia hemisphaerica|type=transcript|length=3028bp|location=Sequence derived from alignment at sc0000410:144313..147340- (Clytia hemisphaerica)
CACCGAGTCAATTGAACACAATCAAATAATTGCAAGTCGATTGTCAAACG
TAATCGAATATATTACCCAGGATTTGTCGTTCAATTGCTTTGATTACGTT
CGATTGTATTCTATTATGTTCGATTATGTTCAATTGATTCAATTGTATTT
AGTACGGTACTTAAGCGCTCGGCCGTCCACGCTGAAAAGTTCTAACAGAG
TGATCCAATTTAATTTAATCGCAATCAAACTCATTGAACATAATCGTAAT
GGAACGAAATCAAAGATTAATCAAATGAAATTGACAATCAATCGAACCAA
TCGAACATAGTCAACTATTATCAATTGAACCAATCTAACCTTACTTAAAC
ACAATCGAACACAATCAAATATTACCCATGAATTGGCCCTTCGATTGAGA
TTTGATTACATTTGACAATCAATCACAATTATTTGATCGCGTTCGATTAT
GTTAGATTGGTTTGATTGCGATTTTTGTTCGATTACGATTTTTGTTTGAA
GTTGTTCGATTGATACCGTCTGGATATGAGGATTCCCATTTCCGTAAAAC
AGCGATTCCCCATGGTTGCAAAATGGTGGCTATGGGTAATTCCTTTGTTC
TTTTGCTGTTTTCTTTTGTTCTATGTGACGTTAAGATGCTTTGTCTGTCT
AAGCTCAAAATACGTCTGTTAATAGATGATTCCATCAAAGAGTGCTCAAT
GATCAGGACCAGAGCTTCATACAGTGTGCAAGAAAAAACTGCACACTGAT
TTATTATTGTTAACCTTATATCAAGAATATTTTGGTAAAATTTACAATGG
GCGCTTCAAATAATTTGATACTGTACCTACCAAGTACGGTTACTTCAACA
GTTTTTTGCCTATGGTCATAACAATCTGGAGCTTGATTAATATTGTGTCC
TCAAAAAAGTTTCAAAAATATATATATATTTTTTAGGCTTGTTTTAGTTC
CATAAATGGTGTCACAGACTTGACCCCTTCTATATATATTTTCAGTTTTA
ACAGATTTTATTTTAGTTTGATATAAAGATATAAAGCTAGAAGGTAGAAA
GTTAACAACCTTACATGTCAACAATTAAATACCTACAATGGTAGTGTTAA
AACTAAATCATTAATGGTAGGTATTTGATTATTTTTGATTTAAAATTCAA
AGGGAAGCATTCAAGTAATGGAAATATTATCACTGGATGAGTATAGTATA
TTGGAAATATTTAAGCATCTTGATCTAGACAGTAGAAGAAATCTCTCCTT
GACATGTAAAAGGTTTCACCAAGCGAACAAAACTATTTTGAATTGGGATG
TACTTGAAGAAGATTTGAAATCCCAGTTGGTAGATTGTGTATGTAATGGA
CATGATAGGGATGATATCCCTTACAATTTCAAATACCAATATAATGTGTC
CATGGTTTTGAAGTATTTTCTACAGACCATTGATGTTTGTAACAGGATAT
CAAAGGAATCTTTACTGAAGGAAGATGATATTGTTCTGAAAGACCTAAAA
TTAAGTTCTGTCGAATTGATTCTAAAAAGGTCATTCAAATGCGAGACACA
TGGATTGGAACATCTGGTGAAAATTGGTAACAGTTCCCACATTGATTTTA
ATTTTTGGTACACATTCAATCCGTCACCTGGAAAGTTCATTTATCTATGC
AATTGCAAACATCCTGATCAAAAATTACGTAGATTGCCTTTCGTGGAGGA
TGTAGTGATGGGTATCATATACGATGAGGTGACAGACCAAACAAAGTTTT
ACATGTGTGACATCACTCGGTTTGATTGGTTCTACACTAAACCTACAGAG
TAAGTGTTGACCATGGTGTTATAATTAGATTAGTTATACTGTCTATATAC
ACCTTTAGGGAACTAACTTTCGCTGTAACTAATTTTCAAGGAACTAATTT
TCACGAACTAATTTTCGCATTTTTGGGTGTCTACCGCAAAAATTAGTTCT
GCGAAATACAAATTTTACTAGAAATCCTTAAAAAAAGGTAAATGAAAGAA
CCGTGGTATTTGTACCCTCGCCTGGGAAAAATAACTTCTGCAAAAATTAG
TTACCACAAAAATTAGTTCCCTTAATAAGGTACTTATCTAATTTTAAAAT
TTTGTCGGATCTAAAACGTCATTATTCACAAAATCTTCATTTTAAAGAAA
TCTTTTTTAAATACTTACTGCAATGTTTGGAAATATATCTAATTAAACAC
CAGAAAAAAGTATGAGATTTTTGGTGTTATTCTATCCTTATTCGAACTTT
ATCTCCACTTTTTCTTTTTTTATAGCTCAGTTGAGTTTTCAAAAGAGGCA
TCTTCATTACAACAAATCTGTAAAACTCTTTCGCAATTCCTGCAGCTGAA
TAAGAAAACAAATAAATTGACGCCTGAGAAGTTGTATCGTATGACTAAGC
TGTCTGTGGAGTCGCATTCAGATACAATTTTTCCTCTCTTAAGTCACGAT
TTGGAGAGGACTAAGTACAAATTCCAACACGAAGTAGAAAAGCTGAATTT
ATCCCAATCTGAACTCGTCAAGTTGGTGCATAAATTAAAATTTTTTGCTG
ATTTATGTAACTTTCAAAGAAGAGACTTTGTACAATCACTCATCGATTTT
GTCCAACCTATTGGCAACACTATCAACGTTTTTGATTACGGTGAACTCTT
AGCTTATGTGCCTGTAGTGAAAAAGGTGCTTGGAAGAGCAAGTTGTATCA
AGAATAGAGAAAATAAATCTGAGCTAGTTGTTATTAAACTTGAACATAAC
GTCATTTTGGAATCAACGGTGAATTTTACTGGATCAAGTCGGTATTCATT
GGACTTGAATGGGAAAAAGCTGTTACATTTCTTAGATGGAGCTAAAGATG
TTATTCTCTCAGAGGAAAGTGTTTTTGAAATCAGTGCTGCTTTTGAATTA
TTTGTTGATAAGAACATCGATCAGACACTATTAGCAACAGTACCAGAGAT
CAGTTTGGATTTTGTCTTTCAATTATTGCGATGTCTTCATTCTAGTAAAG
TTTTTGTCCTAGATGAACTCAAGTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022276-exon-sc0000410-1575043694:145542..147340 | TCONS_00022276-exon-sc0000410-1575043694:145542..147340 | Clytia hemisphaerica | exon |
| TCONS_00022276-exon-sc0000410-1575043694:144313..145065 | TCONS_00022276-exon-sc0000410-1575043694:144313..145065 | Clytia hemisphaerica | exon |
| TCONS_00022276-exon-sc0000410-1510915933:145542..147340 | TCONS_00022276-exon-sc0000410-1510915933:145542..147340 | Clytia hemisphaerica | exon |
| TCONS_00022276-exon-sc0000410-1510915933:144313..145065 | TCONS_00022276-exon-sc0000410-1510915933:144313..145065 | Clytia hemisphaerica | exon |
| TCONS_00022276-exon-sc0000410-1491911889:145542..147340 | TCONS_00022276-exon-sc0000410-1491911889:145542..147340 | Clytia hemisphaerica | exon |
| TCONS_00022276-exon-sc0000410-1491911889:144313..145065 | TCONS_00022276-exon-sc0000410-1491911889:144313..145065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000410 | supercontig | sc0000410:144313..147340 - |
Blast
The following BLAST results are available for this feature:
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