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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022280 ID=TCONS_00022280|Name=TCONS_00022280|organism=Clytia hemisphaerica|type=transcript|length=2334bp CCTATCTCAGCTATTTCTGAATTATTTTCTTCTCTTTATAGGTCCCTTGG CATTCCAACCGACGCCTTTCAGTCAATCAGGAAATCCAATCATGTCTACT GTTTCATTCCTGGCCTCTATTGTGGACCCGCGTGTGGCCAGCGCCGCTGC AAAAGCTGCCGTTGATGAGTTTTCTCGATTAAAAGAAGAGATTCCTGAGG AGCTTATCGACGCACATGTTGAAAAAGCGAAAGCAGAGATGCCCAATGGT GTCAGTGAAGAGAAACCCACTGAAGAAGCTGCACCAATGCAAGTTGATGA AGCTGTACCCACTACAACACCTACTACAAACGCCCCCACTACCGAAACCA CACCCTCTACAACACCCGCAACTGATCCAGCACAACCACAAGTCAACGGT GAAGTTCATCAAGACGAGAAACCACAATCAGAGACGCCCACACCCGCCCC TGCACCACCCAAGGAGCCCAGTGAGgaggaaaagaagaaacttGCAAACC GCGAGAAAGTTCCGGTGGGCAATATCAAGACTGCGGCCGCCGCTGCTATC GCCTCTGCCGCTGTTAAAGCAAAGTATTTGGCGCAAGTGGAAGAACGAAA GATCAAAAGTTTGGTTGCTCTGCTCGTCGAAACTCAAATGAAGAAACTGG AGATCAAATTGCGCCATTTTGAAGAGTTAGAGACTATTATGGACAAAGAA CGTGAAATTCTTGAGCAACAACGTCAATCGTTGATTAAAGAACGGCAGGA ATTTTTCGCTGATCAACTCAAAGCTCAAGAAGCACGCGCATCCAAAACGC CTGCCATCGCTGATTTCTTTCCACATGGTCCACAGGCTAAACCGGCTGCT GTTCCAACACCTGAAGAAACACCGGCTGCACCTCCTTCTACCACGGCCGC CCCAATGATGGGAAACATTCCATCCCAGCAACCTCAACCGACGCCTATGC AGCCACAACCGACGCCTCCCGCCGGTCTTCTTGCGCAACCACACAGTCAA ACGGAAAACAAAATCCCCAATCCTGACTTTCTACAACATCAAATGACAGC CGCAAGAGCAGGCGGAGCAGCGCTTTCAGTTTTATCTCCACTCGACCCAG CGAAAGGTGATACGCAATCAGATGCTTCAACTACGGGCGTGCAAAGCACA TCAGGCGAACTGCTCACAGCAAAAGCTCCCATGCCGTTAAGCAGTGCACA AGAAGACAAAAGTAAACCTCCTGAGCTTCCACCTTACGGTGCAGTTCCCC AACAAGTTCAAGCACCCCCTGCACCCATGAACACGCCACCACCAGTAACC AAAGGGCGTTCAAGAGGGCGTGGCAAGGGACGTGCTTCGCAAAGCGCTAA CGTTGCCcagcaacagcaacaacaacaacagcaagaTATGCAACAGCAAC AGCAACAACAGCATCAAGCGTTCATGGGGAACCTCCCTCCTTACAGCGGC TATACTGGTTTCCCTGGCAACCAAATGCCACCAGGCATGCCGGGAATGCA AGGCTTCCAACCCAATCCCATGATGCAAGGTGGGAACATGATGCCTAATT TAAACCAAGGACAATTTCCACCGGGTCAATTTCCCCCTGGTGCAGGAGGC CAATTCCCTCCTATGGGTTGATTACAGTAATAGACAGTGATTTTAAAAGA CATGTACAAAAGAAAGGTTGAACATTTATTTATAAACATTCTTTTTCTGG ATTGTCAATTATATTCGCCCGATCGACATTATGAGCTTGAATGAGATATC GACTCGAAAGATTTACATATACACATCATGGAGAGGAGATTATTTCAACA TGTCCTCGCTGGATTTTTATCTTAATTTATTACCGAGAAGGCTCTGTTTT TGGGAAATCGTTCGCggtaaagtttttgaaaatattttccgaTTATTTGA ATTCGTGATGTAATATTGTCATAACTTGTTATACACACCCCCAAAAAAGA CTTATATATAATGTAAACATAACTAGTGGCATCACGACATTACGTCGTGA ATAACATCAATTTGAATCACTTTAAATCTTTTCACTAATTGGGATTTTTT TCTCGGAATCGATGCAATTAGCACTTGATGCCATTTAATGTTCCATTTGA TAATAAATTGAGCATATAAAAAGTAATGGTCGTCCTTTCGGAAAAAGTTG CAAATCATTGCAACGGAGTATTTTACGTTCATTTTTTAAGTATTGAATAT TAGAGgttaatttttttgagaaatattaaGTTTGTTGTAATAAACACAAG TAgagataaacattttttaaaccaaacatatcaaattttaaaagtagaaa atcgtgaaaataaaCGACCTTTGTTGTCTTGTCC Run BLAST on NCBI transcript from alignment at sc0000410:232094..237758- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022280 ID=TCONS_00022280|Name=TCONS_00022280|organism=Clytia hemisphaerica|type=transcript|length=5665bp|location=Sequence derived from alignment at sc0000410:232094..237758- (Clytia hemisphaerica) CCTATCTCAGCTATTTCTGAATTATTTTCTTCTCTTTATAGGTCCCTTGG
CATTCCAACCGACGCCTTTCAGTCAATCAGGAAATCCAATCATGTCTACT
GTTTCATTCCTGGCCTCTATTGTGGACCCGCGTGTGGCCAGCGCCGCTGC
AAAAGCTGCCGTTGGTAAGTGTAATAATCAAAAAGTTTTTATAAGTATTT
TTACAATTTAAGACATAACCATGGTAAGTTAATGAATTTCAACGGAATTC
TGAGCGCTTGTTGTTCATACCGAATCTTTCTCAAGTAACAAAGTAAGCTA
GATTATTTGTATATTTTGTTATTGCTTTAGACCGAAAGTCATGTTCTATA
TCAGTGAGNCGAAACGACATCTATCTTACCAAGAAAGCACAAAAGGTAAT
AAAAGTAAACATGACTTTCAGACCTTTCCAACTGTACTGTAACTTAATGA
ATGAAAGGGAGAGACTTGGCAGTGTATAGTTTGGGTGGGTTGTACAGTCC
AATTATGATTCATTTTCAGTGTCCAATATTTTCTGGAATATTATACAAAA
AATGCATTACAATTATGATGGTGAAAGCAGACCCTCTCGACATCTCATCT
TGCATCCTTGTTTATGATTTTCTTATTTTATCACTTTAGAGTCGGTCTTC
AGCTTACAAAGAATGGACAGATCAAGAAACGTTACTTTTGCTAGAGGTAA
GTTTTTCTTTTGAAAGCTCTATAGCTCATAGTGGAGGGGTTTTCCGGAAT
AGTGAGTATAAGTATGTCTTCGAAAACTGGTTCTTTTCGAAATTCTCGGT
CTTGATGAAATGTATATTACTATTGATATAATGGGAAATTCTCAATTTGA
TTGTAATGCAAGGGTTTGGAGCTTCACAAGGACGATTGGAATAAAGTGTC
CGAACACGTGGGTACGAGAACACAGGACGAATGTATCATGCAATTCCTCA
AGTTGCCCATCGAAGATCCATATCTGGAAAAAGATTCCACCGGTTTCCTT
GGTAATAAACATTTACAAATATTTATTTATTAGTCTAACGTTCGATACCC
TTCTTAAAGTTTGTTGATATTGGCTCTTCCAGATATAAAATATTTTGGAA
TTTACCCCCTGGACATTGTGATTTTTGACCCCCCCCCCTGGACAACGGAT
CTCACCCACCGGACAGGCATCAGTTGACCCCCCATCAGTTGACCCCCCTC
CTAATCATAGTAAGTTTGGTAAATTTTGCAGATTTTTCACTACCCCTGGG
ACAAAATATCCTTTATATCCTCCACCCCCTCCCCCATGTACAAAAATTTT
CTGCAAGGGCTCTATACTTGAATACTGTGATTTTTTTTTTAAACTGCGTC
AACTTAAAGTGGTTCAATGTCAACTAGTTATCTACACTACTTCTACATTG
CAATTAAATAATAATGATGAGTTATTATAAATAAATGAATTCTTTTATAA
TTATTTTGGAAATTCGAGAAAAGTATGTCCTATCTCAGCCATTTCTGAAT
TATTTTCTTCTCCTTATAGGTCCTTTGGCATTCCAACCGACGCCTTTTAG
TCAATCAGGCAATCCAATCATGTCTACTGTTTCATTCCTGGCCTCTATTG
TGGACCCGCGTGTGGCCAGCGCCGCTGCAAAAGCTGCCGTTGGTAAGTGT
AATAATTAAAAAGTTTTTATAAGTATTTTTACAATTTAAGTCATAAGTAA
CCGTGGTAAGTTAATGGAGACCCTAGACAGTCTTTTTACCAAATTTTCAA
ATGAATTTCAACGGAACTCTGAGCGCTTGTTGTTCATAACGAATCTTTCT
CAAGTAACAAAGTAAGCTAGATTATTCGTATATTTTGTTATTGCTTTAGA
CCGAAAGTCATGTTCTATATAAGTAATGTTTTGTTTTAGATGAGTTTTCT
CGATTAAAAGAAGAGATTCCTGAGGAGCTTATCGACGCACATGTTGAAAA
AGCGAAAGCAGAGATGCCCAATGGTGTCAGTGAAGAGAAACCCACTGAAG
GTATGCGTCGTTTTGTTTTCAAGGAAACCTTTGCTTGTATACTGTTTTTT
TTTCTTCAAAATTTTAAGTATTCCCTCTGATGCCTAATAGATAGAGTTTT
GGAGAAAATGATGGGGAAAAAGTAATACATGTAACCCGGGAGAACCCTAG
GTCAACTTAAAAGGGGACTAAATACAGAAGAATAAAGGGTAAAGAATGAA
AACGAAAGCAATAAACAGGATGGTCTGCCAGAGTGGTGTCCCGGTCGGGC
ATTGATCAATTTAGATCACAGATTTGTCGGGTATGTTATATCATCAATTG
TACTGGTTTTTACTGGTTTTTACTGGTTTTTATGACTTTATCGGTTAAAA
CAGCGTATGGCTCAATATTTACTGACTTTTTTATTCATCATCAACTTGTT
CAAACTCTATAGAAGCTGCACCAATGCAAGTTGATGAAGCTGTACCCACT
ACAACACCTACTACAAACGCCCCCACTACCGAAACCACACCCTCTACAAC
ACCCGCAACTGATCCAGCACAACCACAAGTCAACGGTGAAGTTCATCAAG
ACGAGAAACCACAATCAGAGACGCCCACACCCGCCCCTGCACCACCCAAG
GAGCCCAGTGAGGAGGAAAAGAAGAAACTTGCAAACCGCGAGAAAGTTCC
GGTGGGCAATATCAAGACTGCGGCCGCCGCTGCTATCGCCTCTGCCGCTG
TTAAAGCAAAGGTAGTACATGAAATCTAAGTCTTTAAAGAAAAATGTGAA
CGTTTTAGAGATTTTGATAGATATACTTTTTAAATATTGCTTGTCCCGAG
GATCATACAATTAAAATAGATAAACTTTTTGAAACCTTTTCGAACATTAC
CCTTGTTATCAAATTGTAAAGTGTGTTTCAACAACTACATACATGTTGTG
TTCTCGTTTAGTATTTGGCGCAAGTGGAAGAACGAAAGATCAAAAGTTTG
GTTGCTCTGCTCGTCGAAACTCAAATGAAGAAACTGGAGATCAAATTGCG
CCATTTTGAAGAGTTAGAGACTATTATGGACAAAGAACGTGAAATTGTGA
GTTTCCTCGGGGCTGTCTAACTACTGTTTCACATTGCATCACTGTACATC
TAATTTCATCAATACCTTCCTGGGATTGGATGTGAATTTGAATAGGGTCA
TCTCTTTAAATTTCTGGACGGCGTTGTTTGAATTTTTTTTCACTTTTACT
TTTCAGCTTGAGCAACAACGTCAATCGTTGATTAAAGAACGGCAGGAATT
TTTCGCTGATCAACTCAAAGCTCAAGAAGCACGCGCATCCAAAACGCCTG
CCATCGCTGATTTCTTTCCACATGGTCCACAGGCTAAACCGGCTGCTGTT
CCAACACCTGAAGAAACACCGGTATAATGTCCTACTTTTTATTGCTTGCT
TCCTATTCAAATGAATTTGCAGTATTACCCATGTATAAAGTCGGTCTGCA
CCACTAAGCTAACCCGAACAAGTGTTTCGACATACTGCGGCGGGTTAATG
CTTTTCTTTAATCAGGTTGCTCTAAAATATAAAACGGCAAATACACGTTT
TTTTCGAATTGTTCTATACGAATTGAATGAAATGAAAATGGGCCAAATCT
TTAGAATACCCTAAGAATACCCTCTAGGGTGAGTTTGATAAGAATACAGT
CATTTTGTATTTGGTTAACAGAAAAAACTGCTTCCTTTGTTAGACTTGAA
TTTAAACTTTGAGACAGAAATGTAATTTTAGCTCCAAATGTTCATTCAAA
AGTCCAAAACTCTCAAATTGATCATTTCTCATGTTTGTAAAAAAGTCAAG
TCTAAAAAAGTAAGAATACGTTAAGCATATTTCACCCTCAATTTTAGCAA
TTTCTTAAGAATACTTGACCGTCATCCAAAGTACACTATTCTTATAAAAA
TAGCGTGTAGCTGACGTTGAAAAATTCCTTAATGATTACATGATAATAAA
TTGATGCATCTTCTCCTCTAAACTTCAGGCTGCACCTCCTTCTACCACGG
CCGCCCCAATGATGGGAAACATTCCATCCCAGCAACCTCAACCGACGCCT
ATGCAGCCACAACCGACGCCTCCCGCCGGTCTTCTTGCGCAACCACACAG
TCAAACGGAAAACAAAATCCCCAATCCTGACTTTCTACAACATCAAATGA
CAGCCGCAAGAGCAGGTACCTATCATTTCATTCAAATTTGGAGGCATGAA
TAGTGAAGTTGTGGCGTTAGGAAAGAAGCTATATATACACCAAATTCTTC
ATGAAAACTATGTGTTGATTTTACCTTCCAGGCTCCTGGTCTAGAAATTA
AGTTAATTCTGGTTTTGTACCACAAACAGCTATTAAACCATTTTACTGGC
CTGATTTCCCTTGATTGATTTCCCCTTATTTGTTTCTTTAAGGCGGAGCA
GCGCTTTCAGTTTTATCTCCACTCGACCCAGCGAAAGGTGATACGCAATC
AGATGCTTCAACTACGGGCGTGCAAAGCACATCAGGCGAACTGCTCACAG
CAAAAGCTCCCATGCCGTTAAGCAGTGCACAAGAAGACAAAAGTAAACCT
CCTGAGCTTCCACCTTACGGTGCAGTTCCCCAACAAGTTCAAGCACCCCC
TGCACCCATGAACACGCCACCACCAGTAACCAAAGGGCGTTCAAGAGGGC
GTGGCAAGGGACGTGCTTCGCAAAGCGCTAACGTTGCCCAGCAACAGCAA
CAACAACAACAGCAAGATATGCAACAGCAACAGCAACAACAGCATCAAGC
GTTCATGGGGAACCTCCCTCCTTACAGCGGCTATACTGGTTTCCCTGGCA
ACCAAATGCCACCAGGCATGCCGGGAATGCAAGGCTTCCAACCCAATCCC
ATGATGCAAGGTGGGAACATGATGCCTAATTTAAACCAAGGACAATTTCC
ACCGGGTCAATTTCCCCCTGGTGCAGGAGGCCAATTCCCTCCTATGGGTT
GATTACAGTAATAGACAGTGATTTTAAAAGACATGTACAAAAGAAAGGTT
GAACATTTATTTATAAACATTCTTTTTCTGGATTGTCAATTATATTCGCC
CGATCGACATTATGAGCTTGAATGAGATATCGACTCGAAAGATTTACATA
TACACATCATGGAGAGGAGATTATTTCAACATGTCCTCGCTGGATTTTTA
TCTTAATTTATTACCGAGAAGGCTCTGTTTTTGGGAAATCGTTCGCGGTA
AAGTTTTTGAAAATATTTTCCGATTATTTGAATTCGTGATGTAATATTGT
CATAACTTGTTATACACACCCCCAAAAAAGACTTATATATAATGTAAACA
TAACTAGTGGCATCACGACATTACGTCGTGAATAACATCAATTTGAATCA
CTTTAAATCTTTTCACTAATTGGGATTTTTTTCTCGGAATCGATGCAATT
AGCACTTGATGCCATTTAATGTTCCATTTGATAATAAATTGAGCATATAA
AAAGTAATGGTCGTCCTTTCGGAAAAAGTTGCAAATCATTGCAACGGAGT
ATTTTACGTTCATTTTTTAAGTATTGAATATTAGAGGTTAATTTTTTTGA
GAAATATTAAGTTTGTTGTAATAAACACAAGTAGAGATAAACATTTTTTA
AACCAAACATATCAAATTTTAAAAGTAGAAAATCGTGAAAATAAACGACC
TTTGTTGTCTTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00022280-exon-sc0000410-1575043694:237595..237758 | TCONS_00022280-exon-sc0000410-1575043694:237595..237758 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1575043694:235759..235869 | TCONS_00022280-exon-sc0000410-1575043694:235759..235869 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1575043694:235048..235346 | TCONS_00022280-exon-sc0000410-1575043694:235048..235346 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1575043694:234713..234847 | TCONS_00022280-exon-sc0000410-1575043694:234713..234847 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1575043694:234388..234552 | TCONS_00022280-exon-sc0000410-1575043694:234388..234552 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1575043694:233594..233780 | TCONS_00022280-exon-sc0000410-1575043694:233594..233780 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1575043694:232094..233366 | TCONS_00022280-exon-sc0000410-1575043694:232094..233366 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1510915933:237595..237758 | TCONS_00022280-exon-sc0000410-1510915933:237595..237758 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1510915933:235759..235869 | TCONS_00022280-exon-sc0000410-1510915933:235759..235869 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1510915933:235048..235346 | TCONS_00022280-exon-sc0000410-1510915933:235048..235346 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1510915933:234713..234847 | TCONS_00022280-exon-sc0000410-1510915933:234713..234847 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1510915933:234388..234552 | TCONS_00022280-exon-sc0000410-1510915933:234388..234552 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1510915933:233594..233780 | TCONS_00022280-exon-sc0000410-1510915933:233594..233780 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1510915933:232094..233366 | TCONS_00022280-exon-sc0000410-1510915933:232094..233366 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1491911889:237595..237758 | TCONS_00022280-exon-sc0000410-1491911889:237595..237758 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1491911889:235759..235869 | TCONS_00022280-exon-sc0000410-1491911889:235759..235869 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1491911889:235048..235346 | TCONS_00022280-exon-sc0000410-1491911889:235048..235346 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1491911889:234713..234847 | TCONS_00022280-exon-sc0000410-1491911889:234713..234847 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1491911889:234388..234552 | TCONS_00022280-exon-sc0000410-1491911889:234388..234552 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1491911889:233594..233780 | TCONS_00022280-exon-sc0000410-1491911889:233594..233780 | Clytia hemisphaerica | exon |
TCONS_00022280-exon-sc0000410-1491911889:232094..233366 | TCONS_00022280-exon-sc0000410-1491911889:232094..233366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000410 | supercontig | sc0000410:232094..237758 - |
Blast
BLAST of TCONS_00022280 vs. Swiss-Prot (Human)
Match: SMRC1 (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 4.584e-24 Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 2
Query: 587 VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDKEREILEQQRQSLIKERQEFFADQLKAQEARA 790
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD+E+E LEQQRQ L+ ERQ F +QLK E RA
Sbjct: 887 VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRA 954 HSP 2 Score: 93.5893 bits (231), Expect = 2.108e-19 Identity = 48/65 (73.85%), Postives = 62/65 (95.38%), Query Frame = 2
Query: 38 IGPLAFQPTPFSQSGNPIMSTVSFLASIVDPRVXXXXXXXXVDEFSRLKEEIPEELIDAHVEKAK 232
+GPLA+QP PFSQSGNP+MSTV+FLAS+VDPRVASAAAKAA++EFSR++EE+P EL++AHV+K +
Sbjct: 678 LGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQ 742
The following BLAST results are available for this feature:
|