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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022281 ID=TCONS_00022281|Name=TCONS_00022281|organism=Clytia hemisphaerica|type=transcript|length=1844bpRun BLAST on NCBI protein sequence of TCONS_00022281-protein >TCONS_00022281-protein ID=TCONS_00022281-protein|Name=TCONS_00022281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=572bp MAATKKDGGANSKYWDSQDTIDQLENVRTWLIKNNRKFVQSDSPSSKSISRun BLAST on NCBI transcript from alignment at sc0000410:238164..264882- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022281 ID=TCONS_00022281|Name=TCONS_00022281|organism=Clytia hemisphaerica|type=transcript|length=26719bp|location=Sequence derived from alignment at sc0000410:238164..264882- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000410:238164..264882- >TCONS_00022281 ID=TCONS_00022281|Name=TCONS_00022281|organism=Clytia hemisphaerica|type=CDS|length=34380bp|location=Sequence derived from alignment at sc0000410:238164..264882- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022281 vs. Swiss-Prot (Human)
Match: SMRC1 (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 533.487 bits (1373), Expect = 4.346e-176 Identity = 278/585 (47.52%), Postives = 387/585 (66.15%), Query Frame = 3
Query: 87 KKDGGANSKYWDSQDTIDQLENVRTWLIKNNRKFVQXXXXXXXXXXDLVKQLIQFQEDSFGKSVAKPPLTRVPMKIFLDFTSGGGLCQILSSAFKYKVDQGWRRFDFQSPARVDRNVELFLNIERSLKEKSLLQLPKVFLNPDIESKQISKMKEIIKRHMGVIVDDKDKATHIVTTGPPPNQQPDEDWIRPILKKDKQVLVHWWYYPDSYDSLISVSECDQEPEDPPQRTKPWEVNGRWLYDLDIYNEWMNEEDYEIEXXXXXXXXXXXXXXKRKVKGRLASSDE---SSAGRKRKLMQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIQLGIISKVSQVEDISNNTPANEKAKAKATPVEGQK-----EKKKDTVPRMSESVSRDPETP-----------HDDNLPEQTRHIVVPSYAAWFDYNSIHAIERRALPEYFNGKNKSKSPEIYMAYRNFMIDSYRLNPTEYLTATACRRNLCGDVCAIVRVHAFLEQWGLVNYQVDTESRPLPMGPPPTSHFHALADTPSGLQPLQASKSQLTASQQLVNLAXXXXXXXXXXXXXXXXTDLENFG 1784
+KDGG +K+W+S +T+ QL++VR WL K+ +K+V +D+P++K+++ LV QL+QFQED+FGK V P T++P K F+DF +GG LC IL +A+KYK +QGWRRFD Q+P+R+DRNVE+F+NIE++L + + L P ++L PDI+ K +K+K+IIKRH G D+K KA+H + P + Q DE+W+RP+++K+KQVLVHW +YPDSYD+ + ++ D E EDPP KPW+V+ +W+ D DI+NEWMNEEDYE++ + +K + R + S+ RKRK SP P + R K + + + D++ + V +E++ N K ++ TPV+G E+ ++TV + ++ E P +DN+ EQT HI++PSYA+WFDYN IH IERRALPE+FNGKNKSK+PEIY+AYRNFMID+YRLNP EYLT+TACRRNL GDVCA++RVHAFLEQWGLVNYQVD ESRP+ MGPPPT HF+ LADTPSGL PL Q+ A+QQ++N + + P DL+NFG
Sbjct: 33 RKDGGPATKFWESPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIY--PYSSSQDDEEWLRPVMRKEKQVLVHWGFYPDSYDTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIFNEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDME--DPTPVPNIEEVVLPKNVNLKKDSENTPVKGGTVADLDEQDEETV----TAGGKEDEDPAKGDQSRSVDLGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFP---------EKNKEKPVDLQNFG 600 The following BLAST results are available for this feature:
BLAST of TCONS_00022281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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