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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022310 ID=TCONS_00022310|Name=TCONS_00022310|organism=Clytia hemisphaerica|type=transcript|length=2090bp
TTTAGAAAAGGgagtatataaaaataaaaaccattGTAAATTGCGAAAAT
CGTAATGATGATATGAATGGACAATGGCAGCAGAAAATAAAACTGCTTTG
TTTCGAGAACTGTTATCAGACGCTCGCGACTTCTATTTACCAACTGAAGT
GAGAGAGTTGGAAGACAACCCTTCACCGTTGTGCTTTCTACGGGAACATG
TTATGACGAATGTTCCTCTCGTCATCCGCGGTGGAGTGAAACATTGGCCT
GCTGTCGAGAAATGGAGTGATGAATATTTGTGTGAAACACTGGGTGACAA
AACAGTGACTGTTTCTATGACACCAAATGGTTACGCCGATGCACCGGTGG
GTGAGAAATTCGTCCTGCCGCATGaagaacaaatgaaaatgagtgACTTC
TTGAAAATGCTGAACAATCATAATTCAAAAGACGTCGTCTACATACAAAA
GCAAAACTCAAGTTTCACTGATGAATTCCATCAACTCGTTCCAGATGCAG
CTAGTGAAATCAGTTGGACATCGGAAGCATTTGGGTCGACCCCTGATGCC
ATCAACTTTTGGATGGGTGGAAACCGGTCCATTACTTCGACACACAAAGA
TCCTTATGAGAATCTATACTGTGTGGTTCGTGGAAGTAAAACGTTCACCT
TGTACCCTCCACTCACTCTTCCCTTCATGCCATATCAAATGTTTTCGTTG
GCTAAGTATGTGAGGAGATGTGAAGGAGTTTACGATATTGTGGATGAAAA
GACTGTGGACGAGTCACGTGATGATAATGACATTGATGAGGTGGTGGAAC
GTGTAAAGCATGAAGGTAAGGTACACAAAGATGAAACTGTTGAGAATAAT
GAACAAAAAAACGACCCTGGTAATGACATTAAAACTGGCGAGGAACCATT
AAAATCATCGGCTTGTTCTATACCTAAAGTTCCTTGGATAGCATGCAATC
CTTTGAAATACGATGCTAGATATCAGACATTTTTCGACAATTCGCGTCCA
TTGGTTGTTACGTTACAAGCAGGTGACGTGTTGTATCTCCCCTCTCTCTG
GTTCCACCACGTCCAACAGACCAATAGCACCATTGCCGTCAACTTTTGGT
ATGATATGAACTATGATGCCAAGTATGTTTATTTCAAATTCTTAGAGAAA
TTGTCACAACCTCGATTGAGTAGCCTGGTTTCGTGAAATAGAATGATTAA
AAAGCTGAATTAAGCATATTAActtgtttttgtatgaaaacaCAAGATGA
TACTCGGTTAAATTCGATTCGATCatgggggccgtccacatagtacgtac
gcactaaggagggagggggtcttctcaaaagcgtatgcttgcgtacaggg
ggaggagagggtcaaaggaaaatttacgtacgcagagaaaattctttcat
ttccatttttttatcttatatGATCTTTTGAAAGAGAGTTATTAAAAAGA
GTtaattaaaaattattaaaaagagaatgggctttttcagaaaaaaatcg
tgcaccccctgttgaggaggtccatttctgttccaagggggtaaggtttg
aaatgcagtggaattccataagggtagaccaAAATCCGTCAataataagc
ggaattccaagggggaaattgaaaatttgtaaaaattcggaattccagag
gggtatgatcctaaaattgcctggaattccaagggggtaggtcacaaaag
atGGAACCTCCTCAAcagtgcacggtttttttctggaaaagtccaattat
tgtttgtttgttgaaataaaggtccgaacggaaaggatttgaattcgaaa
ttttcctCAACCGAGGGGGcgggggtgaatgaaaaagtacgtacttacca
gggggtatctatagccatttgcgtacgcttgtgTACATGGTACATGGGGT
aatcgattttcgacattttagtgcgtacgtactatgtggacggtcCCATG
GGTAAAGAACTTTCATCAAATGGCAGCTTAgtttatggaaaatatttttt
gtatgacttttatAAGTAAGACCTCAGAAGGGATCATGGTATCATTCTTT
TCATAAGCAAAGACTCTGTTTAAGGTTTTATGAGCTATCA Run BLAST on NCBI protein sequence of TCONS_00022310-protein >TCONS_00022310-protein ID=TCONS_00022310-protein|Name=TCONS_00022310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MAAENKTALFRELLSDARDFYLPTEVRELEDNPSPLCFLREHVMTNVPLV
IRGGVKHWPAVEKWSDEYLCETLGDKTVTVSMTPNGYADAPVGEKFVLPH
EEQMKMSDFLKMLNNHNSKDVVYIQKQNSSFTDEFHQLVPDAASEISWTS
EAFGSTPDAINFWMGGNRSITSTHKDPYENLYCVVRGSKTFTLYPPLTLP
FMPYQMFSLAKYVRRCEGVYDIVDEKTVDESRDDNDIDEVVERVKHEGKV
HKDETVENNEQKNDPGNDIKTGEEPLKSSACSIPKVPWIACNPLKYDARY
QTFFDNSRPLVVTLQAGDVLYLPSLWFHHVQQTNSTIAVNFWYDMNYDAK
YVYFKFLEKLSQPRLSSLVS Run BLAST on NCBI transcript from alignment at sc0000411:41178..43636- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022310 ID=TCONS_00022310|Name=TCONS_00022310|organism=Clytia hemisphaerica|type=transcript|length=2459bp|location=Sequence derived from alignment at sc0000411:41178..43636- (Clytia hemisphaerica)
TTTAGAAAAGGGAGTATATAAAAATAAAAACCATTGTAAATTGCGAAAAT
CGTAATGATGATATGAATGGACAATGGCAGCAGAAAATAAAACTGCTTTG
TTTCGAGAACTGTTATCAGACGCTCGCGACTTCTATTTACCAACTGAAGT
GAGAGAGTTGGAAGACAACCCTTCACCGTTGTGCTTTCTACGGGAACATG
TTATGACGAATGTTCCTCTCGTCATCCGCGGTGGAGTGAAACATTGGCCT
GCTGTCGAGAAATGGAGTGATGAATATTTGTGTGAAACACTGGGTAAGCA
AACTTACGTTTTTCTGTAAAGAATTAGTTATTGTGTGAACCCATAAGCCT
CTAGATAAATGCTTACCAACTTTTCACTGGCGTTGGTCTCTGTTTGGAAA
GGAGTCCATGTAGCCAAGAAAAGTTTTATCGAGAAATCAATAGACGAGTG
TGTTTGATTTATTAAATTATCAACGAGAAGGAAATCACCCAAACATTGTT
TAATTTCCAGTTTAACTGTCGATTTCTTTATTGTTGGTGCAGGTGACAAA
ACAGTGACTGTTTCTATGACACCAAATGGTTACGCCGATGCACCGGTGGG
TGAGAAATTCGTCCTGCCGCATGAAGAACAAATGAAAATGAGTGACTTCT
TGAAAATGCTGAACAATCATAATTCAAAAGACGTCGTCTACATACAAAAG
CAAAACTCAAGTTTCACTGATGAATTCCATCAACTCGTTCCAGATGCAGG
TATACCTCGTTCTGCTTGGTCCTGGTATCCTTTAATGAATTGGTTTGAGG
TTTAACAGCATATTATGAATATGAAAATCTTTTTCCACGGTATTTAATTG
CATGTTTTGTGTTTTCTAGCTAGTGAAATCAGTTGGACATCGGAAGCATT
TGGGTCGACCCCTGATGCCATCAACTTTTGGATGGGTGGAAACCGGTCCA
TTACTTCGACACACAAAGATCCTTATGAGAATCTATACTGTGTGGTTCGT
GGAAGTAAAACGTTCACCTTGTACCCTCCACTCACTCTTCCCTTCATGCC
ATATCAAATGTTTTCGTTGGCTAAGTATGTGAGGAGATGTGAAGGAGTTT
ACGATATTGTGGATGAAAAGACTGTGGACGAGTCACGTGATGATAATGAC
ATTGATGAGGTGGTGGAACGTGTAAAGCATGAAGGTAAGGTACACAAAGA
TGAAACTGTTGAGAATAATGAACAAAAAAACGACCCTGGTAATGACATTA
AAACTGGCGAGGAACCATTAAAATCATCGGCTTGTTCTATACCTAAAGTT
CCTTGGATAGCATGCAATCCTTTGAAATACGATGCTAGATATCAGACATT
TTTCGACAATTCGCGTCCATTGGTTGTTACGTTACAAGCAGGTGACGTGT
TGTATCTCCCCTCTCTCTGGTTCCACCACGTCCAACAGACCAATAGCACC
ATTGCCGTCAACTTTTGGTATGATATGAACTATGATGCCAAGTATGTTTA
TTTCAAATTCTTAGAGAAATTGTCACAACCTCGATTGAGTAGCCTGGTTT
CGTGAAATAGAATGATTAAAAAGCTGAATTAAGCATATTAACTTGTTTTT
GTATGAAAACACAAGATGATACTCGGTTAAATTCGATTCGATCATGGGGG
CCGTCCACATAGTACGTACGCACTAAGGAGGGAGGGGGTCTTCTCAAAAG
CGTATGCTTGCGTACAGGGGGAGGAGAGGGTCAAAGGAAAATTTACGTAC
GCAGAGAAAATTCTTTCATTTCCATTTTTTTATCTTATATGATCTTTTGA
AAGAGAGTTATTAAAAAGAGTTAATTAAAAATTATTAAAAAGAGAATGGG
CTTTTTCAGAAAAAAATCGTGCACCCCCTGTTGAGGAGGTCCATTTCTGT
TCCAAGGGGGTAAGGTTTGAAATGCAGTGGAATTCCATAAGGGTAGACCA
AAATCCGTCAATAATAAGCGGAATTCCAAGGGGGAAATTGAAAATTTGTA
AAAATTCGGAATTCCAGAGGGGTATGATCCTAAAATTGCCTGGAATTCCA
AGGGGGTAGGTCACAAAAGATGGAACCTCCTCAACAGTGCACGGTTTTTT
TCTGGAAAAGTCCAATTATTGTTTGTTTGTTGAAATAAAGGTCCGAACGG
AAAGGATTTGAATTCGAAATTTTCCTCAACCGAGGGGGCGGGGGTGAATG
AAAAAGTACGTACTTACCAGGGGGTATCTATAGCCATTTGCGTACGCTTG
TGTACATGGTACATGGGGTAATCGATTTTCGACATTTTAGTGCGTACGTA
CTATGTGGACGGTCCCATGGGTAAAGAACTTTCATCAAATGGCAGCTTAG
TTTATGGAAAATATTTTTTGTATGACTTTTATAAGTAAGACCTCAGAAGG
GATCATGGTATCATTCTTTTCATAAGCAAAGACTCTGTTTAAGGTTTTAT
GAGCTATCA Coding sequence (CDS) from alignment at sc0000411:41178..43636- >TCONS_00022310 ID=TCONS_00022310|Name=TCONS_00022310|organism=Clytia hemisphaerica|type=CDS|length=3339bp|location=Sequence derived from alignment at sc0000411:41178..43636- (Clytia hemisphaerica)
CTAGTGAAATCAGTTGGACATCGGAAGCATTTGGGTCGACCCCTGATGCC
ATCAACTTTTGGATGGGTGGAAACCGGTCCATTACTTCGACACACAAAGA
TCCTTATGAGAATCTATACTGTGTGGTTCGTGGAAGTAAAACGTTCACCT
TGTACCCTCCACTCACTCTTCCCTTCATGCCATATCAAATGTTTTCGTTG
GCTAAGTATGTGAGGAGATGTGAAGGAGTTTACGATATTGTGGATGAAAA
GACTGTGGACGAGTCACGTGATGATAATGACATTGATGAGGTGGTGGAAC
GTGTAAAGCATGAAGGTAAGGTACACAAAGATGAAACTGTTGAGAATAAT
GAACAAAAAAACGACCCTGGTAATGACATTAAAACTGGCGAGGAACCATT
AAAATCATCGGCTTGTTCTATACCTAAAGTTCCTTGGATAGCATGCAATC
CTTTGAAATACGATGCTAGATATCAGACATTTTTCGACAATTCGCGTCCA
TTGGTTGTTACGTTACAAGCAGGTGACGTGTTGTATCTCCCCTCTCTCTG
GTTCCACCACGTCCAACAGACCAATAGCACCATTGCCGTCAACTTTTGGT
ATGATATGAACTATGATGCCAAGTATGTTTATTTCAAATTCTTAGAGAAA
TTGTCACAACCTCGATTGAGTAGCCTGGTTTCGTGAGTGACAAAACAGTG
ACTGTTTCTATGACACCAAATGGTTACGCCGATGCACCGGTGGGTGAGAA
ATTCGTCCTGCCGCATGAAGAACAAATGAAAATGAGTGACTTCTTGAAAA
TGCTGAACAATCATAATTCAAAAGACGTCGTCTACATACAAAAGCAAAAC
TCAAGTTTCACTGATGAATTCCATCAACTCGTTCCAGATGCAGATGGCAG
CAGAAAATAAAACTGCTTTGTTTCGAGAACTGTTATCAGACGCTCGCGAC
TTCTATTTACCAACTGAAGTGAGAGAGTTGGAAGACAACCCTTCACCGTT
GTGCTTTCTACGGGAACATGTTATGACGAATGTTCCTCTCGTCATCCGCG
GTGGAGTGAAACATTGGCCTGCTGTCGAGAAATGGAGTGATGAATATTTG
TGTGAAACACTGGCTAGTGAAATCAGTTGGACATCGGAAGCATTTGGGTC
GACCCCTGATGCCATCAACTTTTGGATGGGTGGAAACCGGTCCATTACTT
CGACACACAAAGATCCTTATGAGAATCTATACTGTGTGGTTCGTGGAAGT
AAAACGTTCACCTTGTACCCTCCACTCACTCTTCCCTTCATGCCATATCA
AATGTTTTCGTTGGCTAAGTATGTGAGGAGATGTGAAGGAGTTTACGATA
TTGTGGATGAAAAGACTGTGGACGAGTCACGTGATGATAATGACATTGAT
GAGGTGGTGGAACGTGTAAAGCATGAAGGTAAGGTACACAAAGATGAAAC
TGTTGAGAATAATGAACAAAAAAACGACCCTGGTAATGACATTAAAACTG
GCGAGGAACCATTAAAATCATCGGCTTGTTCTATACCTAAAGTTCCTTGG
ATAGCATGCAATCCTTTGAAATACGATGCTAGATATCAGACATTTTTCGA
CAATTCGCGTCCATTGGTTGTTACGTTACAAGCAGGTGACGTGTTGTATC
TCCCCTCTCTCTGGTTCCACCACGTCCAACAGACCAATAGCACCATTGCC
GTCAACTTTTGGTATGATATGAACTATGATGCCAAGTATGTTTATTTCAA
ATTCTTAGAGAAATTGTCACAACCTCGATTGAGTAGCCTGGTTTCGTGAG
TGACAAAACAGTGACTGTTTCTATGACACCAAATGGTTACGCCGATGCAC
CGGTGGGTGAGAAATTCGTCCTGCCGCATGAAGAACAAATGAAAATGAGT
GACTTCTTGAAAATGCTGAACAATCATAATTCAAAAGACGTCGTCTACAT
ACAAAAGCAAAACTCAAGTTTCACTGATGAATTCCATCAACTCGTTCCAG
ATGCAGATGGCAGCAGAAAATAAAACTGCTTTGTTTCGAGAACTGTTATC
AGACGCTCGCGACTTCTATTTACCAACTGAAGTGAGAGAGTTGGAAGACA
ACCCTTCACCGTTGTGCTTTCTACGGGAACATGTTATGACGAATGTTCCT
CTCGTCATCCGCGGTGGAGTGAAACATTGGCCTGCTGTCGAGAAATGGAG
TGATGAATATTTGTGTGAAACACTGGCTAGTGAAATCAGTTGGACATCGG
AAGCATTTGGGTCGACCCCTGATGCCATCAACTTTTGGATGGGTGGAAAC
CGGTCCATTACTTCGACACACAAAGATCCTTATGAGAATCTATACTGTGT
GGTTCGTGGAAGTAAAACGTTCACCTTGTACCCTCCACTCACTCTTCCCT
TCATGCCATATCAAATGTTTTCGTTGGCTAAGTATGTGAGGAGATGTGAA
GGAGTTTACGATATTGTGGATGAAAAGACTGTGGACGAGTCACGTGATGA
TAATGACATTGATGAGGTGGTGGAACGTGTAAAGCATGAAGGTAAGGTAC
ACAAAGATGAAACTGTTGAGAATAATGAACAAAAAAACGACCCTGGTAAT
GACATTAAAACTGGCGAGGAACCATTAAAATCATCGGCTTGTTCTATACC
TAAAGTTCCTTGGATAGCATGCAATCCTTTGAAATACGATGCTAGATATC
AGACATTTTTCGACAATTCGCGTCCATTGGTTGTTACGTTACAAGCAGGT
GACGTGTTGTATCTCCCCTCTCTCTGGTTCCACCACGTCCAACAGACCAA
TAGCACCATTGCCGTCAACTTTTGGTATGATATGAACTATGATGCCAAGT
ATGTTTATTTCAAATTCTTAGAGAAATTGTCACAACCTCGATTGAGTAGC
CTGGTTTCGTGAGTGACAAAACAGTGACTGTTTCTATGACACCAAATGGT
TACGCCGATGCACCGGTGGGTGAGAAATTCGTCCTGCCGCATGAAGAACA
AATGAAAATGAGTGACTTCTTGAAAATGCTGAACAATCATAATTCAAAAG
ACGTCGTCTACATACAAAAGCAAAACTCAAGTTTCACTGATGAATTCCAT
CAACTCGTTCCAGATGCAGATGGCAGCAGAAAATAAAACTGCTTTGTTTC
GAGAACTGTTATCAGACGCTCGCGACTTCTATTTACCAACTGAAGTGAGA
GAGTTGGAAGACAACCCTTCACCGTTGTGCTTTCTACGGGAACATGTTAT
GACGAATGTTCCTCTCGTCATCCGCGGTGGAGTGAAACATTGGCCTGCTG
TCGAGAAATGGAGTGATGAATATTTGTGTGAAACACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022310-exon-sc0000411-1575043694:43344..43636 | TCONS_00022310-exon-sc0000411-1575043694:43344..43636 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1575043694:42888..43094 | TCONS_00022310-exon-sc0000411-1575043694:42888..43094 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1575043694:41178..42767 | TCONS_00022310-exon-sc0000411-1575043694:41178..42767 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1510915933:43344..43636 | TCONS_00022310-exon-sc0000411-1510915933:43344..43636 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1510915933:42888..43094 | TCONS_00022310-exon-sc0000411-1510915933:42888..43094 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1510915933:41178..42767 | TCONS_00022310-exon-sc0000411-1510915933:41178..42767 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1491911889:43344..43636 | TCONS_00022310-exon-sc0000411-1491911889:43344..43636 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1491911889:42888..43094 | TCONS_00022310-exon-sc0000411-1491911889:42888..43094 | Clytia hemisphaerica | exon |
| TCONS_00022310-exon-sc0000411-1491911889:41178..42767 | TCONS_00022310-exon-sc0000411-1491911889:41178..42767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:41178..43636 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003347 | JmjC_dom |
Blast
BLAST of TCONS_00022310 vs. Swiss-Prot (Human)
Match: JMJD7 (JmjC domain-containing protein 7 OS=Homo sapiens GN=JMJD7 PE=1 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 5.032e-83 Identity = 143/363 (39.39%), Postives = 202/363 (55.65%), Query Frame = 2
Query: 77 AAENKTALFRELLSDARDFYLPTEVRELEDNPSPLCFLREHVMTNVPLVIRGGVKHWPAVEKWSDEYLCETLGDKTVTVSMTPNGYADAPVGEKFVLPHEEQMKMSDFLKMLNNH-NSKDVVYIQKQNSSFTDEFHQLVPDAASEISWTSEAFGSTPDAINFWMGGNRSITSTHKDPYENLYCVVRGSKTFTLYPPLTLPFMPYQMFSLAKYVRRCEGVYDIVDEKTVDESRDDNDIDEVVERVKHEGKVHKDETVENNEQKNDPGNDIKTGEEPLKSSACSIPKVPWIACNPLKYD-ARYQTFFDNSRPLVVTLQAGDVLYLPSLWFHHVQQTNSTIAVNFWYDMNYDAKYVYFKFLEKLSQ 1159
A E + RE + AR+ +P V L+ P+PL F R+ V N P +IR ++HWPA++KWS Y T+G V+V++TP+GYADA G++F++P E ++ +S L +L V+Y+QKQ S+ E QL+PD S + W SEA G PDA+NFW+G ++TS HKD YENLYCVV G K F +PP PF+PY++++ A Y EG + +VDE E +E+V PWI +PL D ARY + + ++ L T++AG++LYLP+LWFHHVQQ+ IAVNFWYDM YD KY YF+ L+ L++
Sbjct: 5 ALEAVRSELREFPAAARELCVPLAVPYLDKPPTPLHFYRDWVCPNRPCIIRNALQHWPALQKWSLPYFRATVGSTEVSVAVTPDGYADAVRGDRFMMPAERRLPLSFVLDVLEGRAQHPGVLYVQKQCSNLPSELPQLLPDLESHVPWASEALGKMPDAVNFWLGEAAAVTSLHKDHYENLYCVVSGEKHFLFHPPSDRPFIPYELYTPATYQLTEEGTFKVVDE-------------EAMEKV------------------------------------------PWIPLDPLAPDLARYPS-YSQAQALRCTVRAGEMLYLPALWFHHVQQSQGCIAVNFWYDMEYDLKYSYFQLLDSLTK 311
The following BLAST results are available for this feature:
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