TCONS_00022313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022313
Unique NameTCONS_00022313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022313 ID=TCONS_00022313|Name=TCONS_00022313|organism=Clytia hemisphaerica|type=transcript|length=1158bp
TTTGAACGTGGTGCAAATAAGAAAGAGAAAGGAGGGGCTGGTAAGAACAA
GAAGAACATTTATGGAGGGAAAAAGAAGAAGGGGCGAGATGAAGATGACT
TCAAACAAGATtctgatgaagaagaagaagcagaCATGCTCGAATCCAAA
GAAGTCGATTACATGTCCGAAAGCTCTTCCGAGGACGAGTTGAAGGAGAT
GGACGATGAACCGGACCCTGAGAAAGCGTCCACCAAGCAGAAAGCGAAAG
ACGACTTGAACTTATTCTCCGATACTTCTTCTGAAGACGAAGACgatgaa
gaagaagataaaCAACTCAACCAAGCTGGAAAACAACTCAAAGCAATGCT
TAAGAGTGAATCAGGTGAACGAAGCTCTGATGAAGAAGACGATGACGAGG
ATATCGATGATCAATATTCAAAGAACGCCATGCTTATCCAAGGGAAGGAT
ggtaaaaagaagaagaaaaacggCAGTAACAACGGATCGAAGCCAACAAG
TCGCTCCTCCACACCTGTTCAACATCAGAAAGATCAAGACTCCTCCACAT
CGGATACTCTTTCGCAAGCTGCCAAATCGCTCAAAGATGCTGGTTCAAAA
CGAGGTCACGACAGCTCATCAGTCCCTTCACCCGGATCGAAGAAACAAAA
GTTCAATTCATCCGTTTCATCGGGAGGGCGTTCCAACAGTCCGCTCACTG
TGCCCTCGTCCGCCGGAAACGATCGAAGCGCGTCACCGGCCGTCCGCTCG
TCTACACCTTCAGATGGACACAATATAACTGAAAGCGCTATAAGACGTTA
TCTCACGCACAAACCAATGACTACTGCGGATTTAATGCGAAAATTTAAAC
CGAAAAAGACTGGATTAAGTAAAGAGCAGACCGTTAGTGCAattgccgcc
atcttgaaaaaaatacaacCCCACCAGGAGAAAATTGAAGGAAAATTGTA
TCTAtcgataaagaataaaaaatgaaacaaatcaTATTGTCCTTATTTAA
TTTTCGGGTCGAAAAGAATTTCAGAGCTTCAGAAATACAGCTTATGAAAC
TTATCATTGGGACATTTGTGTGTTTTAAAACGTTTTGTAGTTGTAGTACT
TaagtttttatcttatttataattttttttttgaaaaataaggatTATTC
TAAAACAT
Run BLAST on NCBI

transcript from alignment at sc0000411:44119..48073-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022313 ID=TCONS_00022313|Name=TCONS_00022313|organism=Clytia hemisphaerica|type=transcript|length=3955bp|location=Sequence derived from alignment at sc0000411:44119..48073- (Clytia hemisphaerica)
TTTGAACGTGGTGCAAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTGA
ACGTGGTGTAAATAAGAAAGGTTTGTCACTGTGTTATTGTTTTGAACGTG
GTGCAAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTGAACGTGGTGCA
AATAAGAAAAGTTTGTCACTGTGTTATTGTTTTGAACGTGGTGTAAATAA
GAAAGGTTTGTTACTGTGTTATTGCTCTGAACGTGGTGCAAATAAGAAAG
GTTTGTCACTGTGTTATTGTTTTGAACGTGGTGCAAATAAGAAAAGTTTG
TCACTGTGTTATTGTTTTGAACGTGGTGTAAATAAAAAAGGTTTGTCACT
GTGTTATTGATTTGAACGTGGTGCAAATAAAAAAGGTTTGTCACTGTGTT
ATTGCTTTGAACGTGGTGTAAATAAGAAAGGTTTGTCACTGTGTTATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATTG
TTTTGAACGTGGTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTTTGAACGTGGTGTAAATAAGAAAGGTTTGTCATTGTGTTATTGTT
TTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATTGCTTTGAA
CGTGGTGCAACTAAAAAAGGTTTGTCACTGTGTTATTGTTTTGAACGTGT
TGTAAATAAAAAAGGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGTAA
ATAAGAAAGGTTTGTCATTGTGTTAATGTTTTGAACGTGGTGCAAATAAG
AAAAGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGCAACTAAAAAAGG
TTTGTCACTGTGTTATTGTTTTGAACGTGTTGTAAATAAGAAAAGTTTGT
CACTGTGTTATTGCTTTGAACGTGGTGCAACTAAAAAAGGTTTGTCACTG
TGTTATTGTTTTGAACGTGTTGTAAATAAGAAAAGTTTGTCACTGTGTTA
TTGCTTTGAATGTGGTGTAAATAAGAAAGGTTTGTCACTGTGTTATTGCT
TTGAATGTGGTGTAAATAAGAAATGTTTGTCACTGTGTTATTGCTTTGAA
CGTGGTGCAAATAAGAAAAGTTTGTCACTGTATTATTGTTTTGAACGTGG
TGCAAATAAGAAAAGTTTGTCACTGTGTTATTGTTTTCGGAATCAGATGA
GACTAAATATCCTTTATCATTCTGTGGATAATCCACACTGTTTTAGATTG
AATATCCATAAGTTTCATGATGAATTGTTTATTTTAGAGAAAGGAGGGGC
TGGTAAGAACAAGAAGAACATTTATGGAGGGAAAAAGAAGAAGGGGCGAG
ATGAAGATGACTTCAAACAAGATTCTGATGAAGAAGAAGAAGCAGACATG
CTCGAATCCAAAGAAGTCGATTACATGTCCGAAAGCTCTTCCGGTATCTC
TCTTTCACTTTTGCTTACATGGCCTGTTCGTTAGCGTCCTGGTTGTATGT
GCAGGTACACTTGGCCATATTGAAATCTTATTGATATCTTTAAAAACAAA
AAAAGATACACACATTCTTCAATTCATACTTTCGTATATTGCTCATTTTA
TTTTCTTCAACGTTTGAGTTACGTACATCTACTTGAGGTTTTTTAAAATC
AATTTGACGTCGATTTAGCCTGAAATAAATCCTATGTTCCAAGTGGTTTC
TTTAGACATTATTCTGTTTGTTTTTGTGCAGAGGACGAGTTGAAGGAGAT
GGACGATGAACCGGACCCTGAGAAAGCGTCCACCAAGCAGAAAGCGAAAG
ACGACTTGAACTTATTCTCCGATACTTCTTCTGAAGACGAAGACGATGAA
GAAGAAGATAAACAACTCAACCAAGCTGGAAAACAACTCAAAGCAATGCT
TAAGGTGATCCTTCTTACTACTCCCCCTGTCTGCCCCTGTTGGAAAAGAA
ATCTGAAATTGACTTCACATATTCAACTATGGTATTTGTTTTCGTACGTC
AGTTCTTTATAAAATCGCTTAAAATGTATATCAAATTTTGTTTCCTCGTC
GTACAATAAAGTGTTTATTTTTTTGTGAGGACTTCTTTATGACAACACAT
CAATCATTGGTTTCATTTTTTCCACTTCTCACATANAAATGTCTGAAAAT
GTACGTCAAATTTTGTTTCCTCATTTTTTTTGTGAGGACTTCTGTAATGA
CTTCTGAAATGTACAACACATCAATTATTGGTTTCATTTTTTCCACTTCG
CACATGCGCAGAGTGAATCAGGTGAACGAAGCTCTGATGAAGAAGACGAT
GACGAGGATATCGATGATCAATATTCAAAGAACGCCATGCTTATCCAAGG
TGAGTACTGCGCTTCATATTCAAAGTTGATATCTGGTAGCAAATTATTGA
TACCTTCTCAATGCCATTGATCACGTCTTCGTTCTGATTTCAATCATTTT
ATGTCAATTTTCTCGGCCAAATCAATACAAAGTGCTGTATAAAATACCTT
TAATGATACTACACGTTTTATCTTATTTGAAATGGTTAGCGGCCAAGAGT
GTGATCAATTGATTTTCTTCTCTTTCAGGGAAGGATGGTAAAAAGAAGAA
GAAAAACGGCAGTAACAACGGATCGAAGCCAACAAGTCGCTCCTCCACAC
CTGTTCAACATCAGAAAGATCAAGACTCCTCCACATCGGATACTCTTTCG
CAAGCTGCCAAATCGCTCAAAGATGGTATTTCATCTATTTTTATTTTTTC
TGTTCGTTTCATATTAGCTTTAAATTAATTGTTCTTCAATGTGAAATCTT
TTTTATCCGTCTTCAATTCACCTTCACACTTTTCAGCTGGTTCAAAACGA
GGTCACGACAGCTCATCAGTCCCTTCACCCGGATCGAAGAAACAAAAGTT
CAATTCATCCGTTTCATCGGGAGGGCGTTCCAACAGTCCGCTCACTGTGC
CCTCGTCCGCCGGAAACGATCGAAGCGCGTCACCGGCCGTCCGCTCGTCT
ACACCTTCAGATGGACACAATATAACTGAAAGCGCTATAAGACGTTATCT
CACGCACAAACCAATGACTACTGCGGATTTAATGCGAAAATTTAAACCGA
AAAAGACTGGATTAAGTAAAGAGCAGACCGTTAGTGCAATTGCCGCCATC
TTGAAAAAAATACAACCCCACCAGGAGAAAATTGAAGGAAAATTGTATCT
ATCGATAAAGAATAAAAAATGAAACAAATCATATTGTCCTTATTTAATTT
TCGGGTCGAAAAGAATTTCAGAGCTTCAGAAATACAGCTTATGAAACTTA
TCATTGGGACATTTGTGTGTTTTAAAACGTTTTGTAGTTGTAGTACTTAA
GTTTTTATCTTATTTATAATTTTTTTTTTGAAAAATAAGGATTATTCTAA
AACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012517XLOC_012517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022313-exon-sc0000411-1575043694:48049..48073TCONS_00022313-exon-sc0000411-1575043694:48049..48073Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1575043694:46081..46236TCONS_00022313-exon-sc0000411-1575043694:46081..46236Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1575043694:45620..45792TCONS_00022313-exon-sc0000411-1575043694:45620..45792Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1575043694:45175..45262TCONS_00022313-exon-sc0000411-1575043694:45175..45262Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1575043694:44799..44945TCONS_00022313-exon-sc0000411-1575043694:44799..44945Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1575043694:44119..44687TCONS_00022313-exon-sc0000411-1575043694:44119..44687Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1510915933:48049..48073TCONS_00022313-exon-sc0000411-1510915933:48049..48073Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1510915933:46081..46236TCONS_00022313-exon-sc0000411-1510915933:46081..46236Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1510915933:45620..45792TCONS_00022313-exon-sc0000411-1510915933:45620..45792Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1510915933:45175..45262TCONS_00022313-exon-sc0000411-1510915933:45175..45262Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1510915933:44799..44945TCONS_00022313-exon-sc0000411-1510915933:44799..44945Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1510915933:44119..44687TCONS_00022313-exon-sc0000411-1510915933:44119..44687Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1491911889:48049..48073TCONS_00022313-exon-sc0000411-1491911889:48049..48073Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1491911889:46081..46236TCONS_00022313-exon-sc0000411-1491911889:46081..46236Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1491911889:45620..45792TCONS_00022313-exon-sc0000411-1491911889:45620..45792Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1491911889:45175..45262TCONS_00022313-exon-sc0000411-1491911889:45175..45262Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1491911889:44799..44945TCONS_00022313-exon-sc0000411-1491911889:44799..44945Clytia hemisphaericaexon
TCONS_00022313-exon-sc0000411-1491911889:44119..44687TCONS_00022313-exon-sc0000411-1491911889:44119..44687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:44119..48073 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81971	1.30499	1.1807	2.12242	0.536064	0.378488	0.528341	0.226286	0.597752	1.13127	0.925259	0.409609	0.673987	0.649954	0.548333	0.715633	0.787086	1.35603	0.556449	0.291893	0.575193	0.670247	1.12502	0.891131	0.256556	0	0.321406	0.755892	0.520795	1.05441
Blast
[Close]
BLAST of TCONS_00022313 vs. Swiss-Prot (Human)
Match: T2FA (General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.542e-18
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:  697 TVPSSAGNDRSASPAVRSSTPSDGH-NITESAIRRYLTHKPMTTADLMRKFKPKKTGLSKEQTVSAIAAILKKIQPHQEKIEGKLYLSIK 963
            T P S     +  P    +TP+ G   +TE A+RRYLT KPMTT DL++KF+ KKTGLS EQTV+ +A ILK++ P ++ I  K++ S+K
Sbjct:  427 TGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 516
The following BLAST results are available for this feature:
BLAST of TCONS_00022313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2FA2.542e-1847.78General transcription factor IIF subunit 1 OS=Homo... [more]
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