TCONS_00022328 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022328
Unique Name	TCONS_00022328
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1308

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000411:102095..105877-

transcript sequence

>TCONS_00022328 ID=TCONS_00022328|Name=TCONS_00022328|organism=Clytia hemisphaerica|type=transcript|length=1308bp
gaaaaaatataaaacaatcaCCTGTTAAATAACTTCAGCTGTTAAAAATG
AGGGTCGTCGCGTTAATAAGCGGAGGGAAGGATAGTTGTTTCAACATGAT
GCATTGTGTTTACCAAGGGCATGAGATTGTTGCTTTGGCGAATCTTCAAC
CAGAAGAAAAAGACGAAATGGACAGTTATATGTATCAGACAGTGGGTCAT
GACGTCATCGACGCTTATAGTGAAGCGTTAGGTTTACCGTTGTACAGAAG
GGTGATCCGTGGCCGCTCAGTGAACGTGCAAGAAGATTATCAGGTTGTCG
CTGAAGATGAAGTTGAAGATCTTTTTCAATTGCTCAAAAAAATCAAGgaa
gaaattgattttgaaggAGTTTCATCTGGAGCGATTCTGTCTAATTATCA
AAGAGTGCGCGTTGAACATGTCTGCAATCGGTTGGAATTGAAATCACTGG
CTTATCTTTGGCAACGAAACCAAGATGAGCTGCTGGATGAAATGATTGCT
GCCGAAGTCACTGCAATTCTCATCAAAGTTGCTTCGCTTGGTTTGAAGCC
ATGTCATCTTGGGCAAACCTTACATGAAATGCGACAAAGTCTTCACAGGA
TGAAGAAGGAATGTTTTCTGAACGTTTGTGGAGAAGGAGGGGAGTACGAA
ACACTTGTTCTTGATTGTCCACTATTCATCAAGACAATCGTCATAGATGA
ATCGACAGTTGTGACACACGAAGAAAGTAATGATGTTTTGACCGTTGCat
acaaaacttttcaaaagttccATCTCCGAGAGAAACTCAATGTTAACAGC
AATATGACATTACGGGAACGAATGAAGGGCGTCACCATAGCAACACCTCC
CTTGTTGAACGTACATGTGCCACAGCTTTGCTCTAATGATCAGCAGGAGA
AAGACAATGCAGATGTAATTTGCACTCGAACTGATGTGCCCAAATCAAAG
GATTGTTGCTTCAGTTTTCGATCCAACAAAACAGTTGGTTGGGTTAGTGG
CATAGTTTGTCCAGTTCAAGAGGACAAAACTCTTGAAGAATCGACGTTGC
AAGTACTCAATACATTTAAAGAGAAACTTGAAGAACATTGTGGTGGACAA
GACGAAAATAATCCAATCAACTGTTTAGTTCATCTTTTTGTTCGAAACAT
GGATGATTTTGCACGAATCAATAACGTCTACAAAAGGTTCTTCAAAGCTA
AACCACCTGCTAGAGTTTGTGTGAAGGTGGAATTGCCACCGAACGAACAT
TTTCGTATGGACACTCATTTAGTAAACCAATCACAACGTCAGGTGCATTA
CGTACAAN

Run BLAST on NCBI

transcript from alignment at sc0000411:102095..105877-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022328 ID=TCONS_00022328|Name=TCONS_00022328|organism=Clytia hemisphaerica|type=transcript|length=3783bp|location=Sequence derived from alignment at sc0000411:102095..105877- (Clytia hemisphaerica)
GAAAAAATATAAAACAATCACCTGTTAAATAACTTCAGCTGTTAAAAATG
AGGGTCGTCGCGTTAATAAGGTAAGTGTCTTTTTATATATTTGTTTAACT
CAGTACCTGCCATGGTAAAGTTGAAGAATACGGCCTGATTTTCAGAGGTC
TCTTCAGTAAATTAGGAGTAGTGGTGTGGTGGTCATCGCTCTTGACTCCA
GTCTGGGAGACCCGAGTTCGATTCCCACTGTAGTACTACGGTTCACTTGG
CAAATGAACACACTTTCGCCCGGCTCAACCCATACCATGTGAGGGGAATT
GGGTACCACTACTCTGATACAAGAGTGTGGATGATATGCCAGGCATTGTT
GTGTGTGGTATCACTTATCCTGTTCCGCGTCTGCGACGAGCTATTATGCT
CTCCCGCGTGGTTCGAGTGTCATCACTATGCATCATGGTATCTGTGTCTC
GCGTGCACAGAACCAGCGATGTCTGGATAGCGCTAAGCGTTCCAAATCGA
AAGAGGAGGAATTCCTACTTCGCAAGGATTAGGACCCATTCCCCAGTGGG
GAGGGCTCATCATATCATCTTCAGTAAATTAGGTAACAATACCTGTTTTG
AATTTCAGCGGAGGGAAGGATAGTTGTTTCAACATGATGCATTGTGTTTA
CCAAGGGCATGAGATTGTTGCTTTGGCGAATCTTCAACCAGAAGAAAAAG
GTAGACTTATTTTACTGGGTCCACTCAGCGTAGTAAATAACCACGTGTCA
AGACATATTCTGATGAATCTACCGGGTTGGAATCCTTTTGTTTTTTACCC
TAAGCTTATGTAAATAACATGTATTGCCCATAGCGTCTTACCCTTCACAC
GGCCACCATTCATAGCGTAAGCTCAAAACTTTTGATCTTTTTAGACGAAA
TGGACAGTTATATGTATCAGACAGTGGGTCATGACGTCATCGACGCTTAT
AGTGAAGCGTTAGGTTTACCGTTGTACAGAAGGGTGATCCGTGGCCGCTC
AGTGAACGTGCAAGAAGATTATCAGGTTGTCGCTGAAGATGAAGTTGAAG
ATCTTTTTCAATTGCTCAAAAAAATCAAGGTAATAATCATTTTCTTTGCA
CTTTGAGAAAATATCTGACCTAATGAATGAAAGCATGTTCTACAGGTTGG
TTGGCCTTCCAAGATTCATATATTTGTTAGCTCAGAAGCAAACGATGTAG
ATTTAAAATGAATAATCCTTTCATTGTTAATATTTTAGGAAGAAATTGAT
TTTGAAGGAGTTTCATCTGGAGCGATTCTGTCTAATTATCAAAGAGTGCG
CGTTGAACATGTGTAGGTAATTGTTTGTCACTTGAAATTGTTGCAACTAA
CCAGTCTCACAGTTTTGAACTAAATTCAAAGTTTTTTTCATGAAATGTTT
CGAATTGGTTCCAATTGGTTCTTCTAACCTCGAGGGTCCAAAAACTTCAG
TGCCGTAGCAACTGGCTACCCCCCCCCAATAATATTTTCAAAAATGGTTA
TTTTGCAAAATGCAAAGTTTTTCTTTTTTAATTTGTCATAAATTTATTTT
GAGTGCATTTTCAAGCAATCTAGAGCTCAAAATTTCAAAATTTCCTTGTT
CTTAAAACACAGCTGCAATCGGTTGGAATTGAAATCACTGGCTTATCTTT
GGCAACGAAACCAAGATGAGCTGCTGGATGAAATGATTGCTGCCGAAGTC
ACTGCAATTCTCATCAAAGTTGCTTCGCTTGGTAAGTCAAAATATGAAAC
AGGTGTTAACAATTGGCTACTTGTTAGTGGCTTTAATAATACGCTTTAAC
CTGAGAAACTTTGATTTTCTTCAGGTTTGAAGCCATGTCATCTTGGGCAA
ACCTTACATGAAATGCGACAAAGTCTTCACAGGATGGTAACGTCTGCTTT
GTTTAATTGTAAATACTTCGTCGCCGGTTGCCTAGAAACCTCTAGAAGAA
TTTTTGATTTTTTTCTCATAGTAGAGTATCCAATTTGAAATTGATTTTTG
AACTTTTCGCATTGCAGAAGAAGGAATGTTTTCTGAACGTTTGTGGAGAA
GGAGGGGAGTACGAAACACTTGTTCTTGATTGTCCACTATTCATCAAGAC
AATCGTCATGTAAGTTGATTGGCACTCCAGCTTATCTATCCTTTAAGAGG
TTGTCGCTATTGCTTCTAGACCAGTTTCTGAAGCATAATGAACGTGGTTT
GGTTTTCCATGAAAGGGTTATCTGTTCAGCGGTTGAAATCCAATATAGAT
GTTCTTTAATGGAAAGACTTGACTCACATAAAAAGTCCTGAAGAGCTACT
GAAAGATTGACGCCAATGGATGTACTGAAATGTCAATTACAAGTAAATCT
TTTAATTCCTTACAGAGATGAATCGACAGTTGTGACACACGAAGAAAGTA
ATGATGTTTTGACCGTTGCATACAAAACTTTTCAAAAGTTCCATCTCCGA
GAGAAACTCAATGTTGTAGGTAGTTGAATTCTCCTTCTTCAACAGATGTG
AATAAACACAATCTTCGTTACTTCCTACTCGCCATGATGCCTATCTATTG
TCTCTTAGTCATAGCTTATCTACAACATCCCTTTAATGGTTTTCCATTCC
AGAACAGCAATATGACATTACGGGAACGAATGAAGGGCGTCACCATAGCA
ACACCTCCCTTGTTGAACGTACATGTGCCACAGCTTTGCTCTAATGATCA
GCAGGTATTGTATGCTCCTCGTATGAGTAAAACACTATCGTTCTCTTGTT
TATTCTCCATTCTCTCCATTCTTTGTCAGTGCAATATGCATACTTTGATG
AGTGTTTGACTATTTCACAATACCACGATTGTTTTCTTTAGGAGAAAGAC
AATGCAGATGTAATTTGCACTCGAACTGATGGTAAGCTTTTTCCTTTTAT
TTTCACTCCTTTCTTTGATCCAGAATGACTAGGGTTGGGCCAGGGTGAGA
TGGATTCATGGATGTGTACTACCGTTACAAATCCATCTGCCACCATCCAT
GTGCACGTACCCAAGTCTTTAAACTGTTTACGCTATCCCAGCTTTGTTTT
TACCCCTCATTTTAAGTTTGTTTCTCTTCGAAAGCATTATAAGCAGTAAA
CTACTATTTCACTGGAGTTACTCTAACTTTCTTTGTAGTGCCCAAATCAA
AGGATTGTTGCTTCAGTTTTCGATCCAACAAAACAGTTGGTTGGGTTAGT
GGCATAGTTTGTCCAGTTCAAGAGGACAAAACTCTTGAAGAATCGACGTT
GCAAGTACTCAATACATTTAAAGGTGGGTCATTTGAATTGTGGCTTTTAT
TGTGATGTTGCGCGATCGTGAGAAATTCAATCATTAATCATTCAATCGTA
AAGCGTACCCAAATGATAAGTTTTTTTGTGATTCACACATAATTGTTAAA
ATTGTTTTCTTTCCAGAGAAACTTGAAGAACATTGTGGTGGACAAGACGA
AAATAATCCAATCAACTGTTTAGTTCATCTTTTTGTTCGAAACATGGATG
ATTTTGCACGAATCAATAACGTCTACAAAAGGTTCTTCAAAGCTAAACCA
CCTGCTAGGTACCATTGCTTAAATTACAATCGAAATAAATGCGAGGATTA
AAATTCCAAATATCAACCTTAAAATGTTCATCCATTTTTAAGTCTTTCAA
TCTCTTTAAAAACAACCAGATTCAACTTTTCTTTTTAGAGTTTGTGTGAA
GGTGGAATTGCCACCGAACGAACATTTTCGTATGGACACTCATTTAGTAA
ACCAATCACAACGTCAGGTGCATTACGTACAAN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012520	XLOC_012520	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000411	supercontig	sc0000411:102095..105877 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.790771	1.05281	1.10686	1.44392	0	0	0	0	0	0	0	0.106895	0	0.0752958	1.85279e-10	0	0	0.178	0.235929	5.91505e-10	0	0.0164603	0	0.283528	0	0	0.348826	0	0.463646	0.530777

Blast

[Close]

BLAST of TCONS_00022328 vs. Swiss-Prot (Human)
Match: DPH6 (Diphthine--ammonia ligase OS=Homo sapiens GN=DPH6 PE=1 SV=3)

HSP 1 Score: 300.442 bits (768), Expect = 6.670e-99
Identity = 148/253 (58.50%), Postives = 191/253 (75.49%), Query Frame = 3

Query:   48 MRVVALISGGKDSCFNMMHCVYQGHEIVALANLQPEE----KDEMDSYMYQTVGHDVIDAYSEALGLPLYRRVIRGRSVNVQEDYQVVAEDEVEDLFQLLKKIKEEIDFEGVSSGAILSNYQRVRVEHVCNRLELKSLAYLWQRNQDELLDEMIAAEVTAILIKVASLGLKP-CHLGQTLHEMRQSLHRMKKECFLNVCGEGGEYETLVLDCPLFIKTIVIDESTVVTHEESNDVLTVAYKTFQKFHLREKLN 791
            MRV ALISGGKDSC+NMM C+  GH+IVALANL+P E     DE+DSYMYQTVGH  ID Y+EA+ LPLYRR IRGRS++ ++ Y     DEVEDL++LLK +KE+ + EG+S GAILS+YQR+RVE+VC RL L+ LAYLWQRNQ++LL EMI++ + A++IKVA+LGL P  HLG+TL +M   L  + K+  ++VCGEGGEYET  LDCPLF K I++D S VV H  ++    VAY  F + HL +K++
Sbjct:    1 MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDLYAEAMALPLYRRTIRGRSLDTRQVYTKCEGDEVEDLYELLKLVKEKEEVEGISVGAILSDYQRIRVENVCKRLNLQPLAYLWQRNQEDLLREMISSNIQAMIIKVAALGLDPDKHLGKTLDQMEPYLIELSKKYGVHVCGEGGEYETFTLDCPLFKKKIIVDSSEVVIH-SADAFAPVAYLRFLELHLEDKVS 252

The following BLAST results are available for this feature:

BLAST of TCONS_00022328 vs. Swiss-Prot (Human)

BLAST of TCONS_00022328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPH6	6.670e-99	58.50	Diphthine--ammonia ligase OS=Homo sapiens GN=DPH6 ...	[more]

You are here

TCONS_00022328 (transcript) - C. hemisphaerica