TCONS_00022334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022334
Unique NameTCONS_00022334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022334 ID=TCONS_00022334|Name=TCONS_00022334|organism=Clytia hemisphaerica|type=transcript|length=1969bp
CAGGaataaatgaacaaaaataataaagaaataaaGTGAAGAGGGGATGT
ATTTCCACAAGTACAAAAGCGAAGCGGATGCTATCCTTCTGAGAGAACAA
CAAGAAGAAGATGGAAGCGCAATCAACAAAACTACCAAAGAAACGGAGGA
TAGTTTCAACTTATCATTTGATATTCATGAGGAGCAAAGCGAAGAATCTT
TCGATGAGAGTCAAGAGGACCTGGATCAGTTGATTGGGCGGCGCTACATG
AAGTGTGGAGCGAATGGTATTGCACAGTTGAGTGAGAAGTTATTGAATGA
AGACAACAAAGAGAATGACATCCCTATCTTGAAGTATTTCGCTCAACTTC
ACATGAAGAATTCTTTCTCTTTTGAATTCATCGGTGGATTACTGGAAGGA
CAAGCAGATGTGAACATGCGTGACGAATACGGACAAAGCCTTTTACACGA
AGTGGTTCGTGAGTGGCACACTGACGTCGCTCAGTTCCTCTACAACAGAA
AGATCAACATTCATCAAACTGATCGCTACGGGCGGACGCCCCTGATGGTG
GCGGCAGCTAGTGATAACGATCTGATGGTGAAATGGCTCCTTCAACGCGG
TGCAAAAGTTTCCGTTAAATGTAAGAGACCAGAGAGATACGAAGCGATTC
ATTACGCAGCGGCTTTCGACGCACCCAAATCTCTAAAAGTGTTGATACAA
NATTTTACAGCAAAAGTTTCCGTCAAATGTAAGAGACCAGAGAGATACGA
AGCGATTCATTACGCAGCGGCTTTCGACGCACCCAAATCTCTAAAAGTGT
TGATACAACATGGTGTGCATCCTGATCGACGAAATGCTTTCCAAGAAACA
CCTCTCTTCATTGCCGCCAATACTGGTTCAGTTCGTACATGCAAGTACCT
GTTGGAGAAAGAACTGCCAGCTTGTACGTACACAAGTTATGGAGCCACAC
CGCTTGAAATGATCTGTGCTAAGATGCCGCTCGANACACAAGTTATGGAG
CCACTCCGCTTGAAATGATCTGTGCTAAGATGCCGCTCGACATCGCTCTC
AAAGCACTCGATCAGTGTTTCTTGGCCAATCAAAAAGCAAACACCAATAT
GGTTTATTTGTCATCTCTGACTAAAAAACGTTGGCGACAATTGTCCGAAC
TTAACAATGTTCCCATGGAAAAACCGACAACTCGTCCCGTGCTAGAGACC
ATAGTGGAGAAGAACGACTTCGGATTGATCGAACATCACGTGATACAAGA
ATACATTAGACAAATGTCACGTGTGTTCGGTGATTTTCACATCACCATCA
ACCTTCTGTTCAACATCGTCTACACGTTGGTGTGGACCATCGAATGTTCC
TTACTCAACCTCAACAATCAAGCAGAAGACAAGAACGATGCATTTCGCAT
CGGAAAAATGGTATTGACCGTCATTGGCTTGTTGATGACTGTCCTGCTAA
CTATCAAGTTGAAGTGGGAATACAATGCAGACCACGTGTTATGGAAAAAG
CATAGGATGGCGGCCGAACAGGCGTTAACAAGGCGGTTCGATCATTGTCA
CCCTTCATGGGAGAAAGAGAAGATGTTACTGATCAATGAGATGGAACAGA
TAGAAGATGACAAACCATTGTTTTGGTCTGACAGATGGGTTTGGATAGAA
ATATTGACGTTACTAACATCTTATCTTCACGTGTTCGTCAACATCCTATG
GTTCGCTAATCCCAGTCACGTGATGAAAGTCATCAACGTTTATTACAATG
TGTTGTTCCTGGTCATTGTATGGCTTCACTCGAACAGAAGTTTGGTCTTC
TCGCCCTCCATTGGTCCTTTCATCACTATCCTGGTGTATTCGACCAAAGC
TGTGGTGCAGTTCGCTTTCTTGTTCGCTGAATTCTTCATCCCGTTCGTTT
GTGGTTTTTATGTCATGTTCGGTGGTGTTCGAAAACGTAAGTTAATCAAT
GGACAGAACCCTGGTAGAG
Run BLAST on NCBI

protein sequence of TCONS_00022334-protein

>TCONS_00022334-protein ID=TCONS_00022334-protein|Name=TCONS_00022334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MYFHKYKSEADAILLREQQEEDGSAINKTTKETEDSFNLSFDIHEEQSEE
SFDESQEDLDQLIGRRYMKCGANGIAQLSEKLLNEDNKENDIPILKYFAQ
LHMKNSFSFEFIGGLLEGQADVNMRDEYGQSLLHEVVREWHTDVAQFLYN
RKINIHQTDRYGRTPLMVAAASDNDLMVKWLLQRGAKVSVKCKRPERYEA
IHYAAAFDAPKSLKVLIQXFTAKVSVKCKRPERYEAIHYAAAFDAPKSLK
VLIQHGVHPDRRNAFQETPLFIAANTGSVRTCKYLLEKELPACTYTSYGA
TPLEMICAKMPLXTQVMEPLRLK
Run BLAST on NCBI

transcript from alignment at sc0000411:159611..163990-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022334 ID=TCONS_00022334|Name=TCONS_00022334|organism=Clytia hemisphaerica|type=transcript|length=4380bp|location=Sequence derived from alignment at sc0000411:159611..163990- (Clytia hemisphaerica)
CAGGAATAAATGAACAAAAATAATAAAGAAATAAAGTGAAGAGGGGATGT
ATTTCCACAAGTACAAAAGCGAAGCGGATGCTATCCTTCTGAGAGAACAA
CAAGAAGAAGATGGAAGCGCAATCAACAAAACTACCAAAGAAACGGAGGA
TAGTTTCAACTTATCATTTGATATTCATGAGGAGCAAAGCGAAGAATCTT
TCGATGAGAGTCAAGGTAAAATGTCCCTTCCATTAGAGGGGCCTGGGAAG
TTTATGTATGTGTGTATTTCATAAGACGGAGAAGGTCAGCTTAAGATTTG
TCTGATACTGATCAACTGAGGACTTTTACTGAAGACACTTTTACCGGCCT
CCATTATTTGGGTCCAAACTGTGGTTTATCACAAATCGCTTAAGCCACTC
CGCCATCCTCGAAAGTGCATAAACTCGATCATGCTTCTCAGGGAGGTCTC
AGTCTGCATAACCAATTATTCAAGATATCTCAAGAAACAAACAGAGAGAT
CATTAAACTTTACGAAATTTCCTTCATAGAGGACCTGGATCAGTTGATTG
GGCGGCGCTACATGAAGTGTGGAGCGAATGGTATTGCACAGTTGAGTGAG
AAGTTATTGAATGAAGACAACAAAGAGAATGACATCCCTATCTTGAAGTA
TTTCGCTCAACTTCACATGAAGAATTCTTTCTCTTTTGAATTCATCGGTG
GATTACTGGAAGGACAAGCAGGTAATATATACATATATACAGAGGGGAGT
TGTATGTGGGTTGCAAAATGAAATGATTTTTTGACAAGCTTGTTATACGG
GAAAATCCATTAAAAGAGGTGGCCTTACAACCATGACGAGTCCATATGGT
GGTATTTTATCCCAAGAGAACATCCAAAAATCGTCATATCAACAGAAAAG
GGTAATGATTCCGTTCAGACTTTGCCCTTTTAATAAAGTTTTGCGTCATC
ATTAATACAACCTTTCTTTGCAGATGTGAACATGCGTGACGAATACGGAC
AAAGCCTTTTACACGAAGTGGTTCGTGAGTGGCACACTGACGTCGCTCAG
TTCCTCTACAACAGAAAGATCAACATTCATCAAACTGATCGCTACGGGCG
GACGCCCCTGATGGTGGCGGCAGCTAGTGATAACGATCTGATGGTGAAAT
GGCTCCTTCAACGCGGTGGTATGAACTATTGAAATATTATCATTTTTGAT
AACTTTCTTTTCAACACGTCAAATGGCAATTTGTAGAGCTACTAATTTAC
TTATATAAATTTTTACTTTTTTGGAGCTATAAACGGCTGGAGGACTGACC
TCTACCGGACTTGCTTTGGACAAAGGTCTAATAATAACATGGCCCAATCT
CATAACTGTTTACTCGAAAAGAATCCCAACCACCCGACCACAACCTTCTT
TCGGCTTCTTTCTTCAGCGTGTAGAAAAGGCTCAAACAAACAACCACTTA
ATGAATTCTTCTATCATTTTACAGCAAAAGTTTCCGTTAAATGTAAGAGA
CCAGAGAGATACGAAGCGATTCATTACGCAGCGGCTTTCGACGCACCCAA
ATCTCTAAAAGTGTTGATACAANATTTTACAGCAAAAGTTTCCGTCAAAT
GTAAGAGACCAGAGAGATACGAAGCGATTCATTACGCAGCGGCTTTCGAC
GCACCCAAATCTCTAAAAGTGTTGATACAACATGGTGTGCATCCTGATCG
ACGAAATGCTTTCCAAGAAACACCTCTCTTCATTGCCGCCAATACTGGTA
AGATTTTAATCATTTGATTGCTTATCAAAGTTACGATTGAACTTATTAAC
ATCCGTAATGCACACTTCTCAGAAGAAAGAGGTTGAAACATGTGTCAGTT
ATGTGAACACCGAGGCTATTGATTCTTCAATGGCATGAAATAAAGATATC
TAGGAAAAAATTTAAAATTTCTAATAATGAAACTTTAGCGAATTTATCAA
GCAAAAGACTTCATTTCAAAGAATAAAAATTTGAAAACGGTGTAAAGGAA
TTTAGTTTGATTTCCAATTTTGACCAAATGTGAAAGTTTCCACCTTTACC
ATAACCATCTCTTGAACACCAGGTTCAGTTCGTACATGCAAGTACCTGTT
GGAGAAAGAACTGCCAGCTTGTACGTACACAAGTTATGGAGCCACACCGC
TTGAAATGATCTGTGCTAAGATGCCGCTCGANACACAAGTTATGGAGCCA
CTCCGCTTGAAATGATCTGTGCTAAGATGCCGCTCGACATCGCTCTCAAA
GCACTCGATCAGTGTTTCTTGGCCAATCAAAAAGCAAACACCAATATGGT
TTATTTGTCATCTCTGACTAAAAAACGTTGGCGACAATTGTCCGAACTTA
ACAATGTTCCCATGGAAAAACCGACAACTCGTCCCGTGCTAGAGGTGAGA
GAATTCCGATTTATTTCTTGGAATTTTTGTGTTTATCAAATCAAAAATCT
CTTAAACATTTTACACAAGCCCAATCTCCGAGTCTTCTGATTTTCAGCGC
TTTTGTCAAAATTCAGTCATTTTTGTTGACATCATTTTTTAATGCTTCTA
GGTGTCTAAACTTTATGTTATATTTTTTTGCCAACCGCACGAGACCTTAT
TTTTTGACTTGCTTAACCTGTGAAGCTAGATTTCAATCAGTTTCGCTTAG
ATGCGACACACATCTTCCCAAGTAGGAGACTCTGCCTTCAACCTGGCCTA
AAATAAAGTAAAAAGTATTTCTTCAACTTGTAGACCATAGTGGAGAAGAA
CGACTTCGGATTGATCGAACATCACGTGATACAAGAATACATTAGACAAA
TGTCACGTGTGTTCGGTGATTTTCACATCACCATCAACCTTCTGTTCAAC
ATCGTCTACACGTTGGTGTGGACCATCGAATGTTCCTTACTCAACCTCAA
CAATCAAGCAGAAGACAAGAACGATGCATTTCGCATCGGAAAAATGGTAT
TGACCGTCATTGGCTTGTTGATGACTGTCCTGCTAACTATCAAGGTACGA
AACCCGATGTTGCTTCTTAAAGTAGGTAGCTCTGATTGGACGAGATCATA
GTTGCACAGAGACTATGAAACGACTTTAAAAAACATTTTGGGACTACTGG
ACCTGCTTTATAGGATTAAAGTTACGCCATTAGCACAGATTTAGTTTTAG
TCCCTCTAAAATAACACGAGCGTTCTAAGATTTGGTATAGAGCACGCACT
AACTACAAAACGTTTGAACATTTTCAGTTGAAGTGGGAATACAATGCAGA
CCACGTGTTATGGAAAAAGCATAGGATGGCGGCCGAACAGGCGTTAACAA
GGCGGTTCGATCATTGTCACCCTTCATGGGAGAAAGAGAAGATGTTACTG
ATCAATGAGATGGAACAGATAGAAGATGACAAACCATTGTTTTGGTCTGA
CAGATGGGTAAGTGACAAATGCTCTGTCATCAACAGGTTTGAGGCTGATT
CTGCTGTTCTAAAGCTTTCGCTGGAAAGATTTGTATACAGAAAAAGTGTT
TCTGCAAAGACTTTCTCTACACGAGTGAATGCGTGAATGAATGAACTGAT
ATGTTCTCAGGTAATAAGAACGAAATACTCTTCATAAGATAGAGCCCTCC
GAATGTACTCCGTGCAGACACTGCAAGTTTAACAGACGCGAACTGCAAAG
CCATGACGTATACCATGACACTCGAACGGCACTGGGAGAGCGATGCTCAC
GCGAGGCCGAACCTTATAAGTGCCAAAGCACGTCACGATACCTGTCTAAT
GTACCCACTCTTGAATCAGTACCCGATTCCCCTCACGTGGCATGGGTTGA
CCCGGGCGAAGGTATCACTCGCAAAGTGAATCGTATAGAAACGGTGTGTA
TTAAACTCAGGCCTCCCATGCGGGAGTCGAGGATGATAACCACTATACCA
CTATGTCTATACTCTTCAGAAGATAGCCAAATAATCAACGACTTTAAGTA
CTGTTGTCAATCGGCTTAACAGAATATGTTAGAATAAGAAGAACACCTGA
TGGGTAATTATTTCTGTTGTATTGATTAATATGTTCTCAAATTGTTCAGG
TTTGGATAGAAATATTGACGTTACTAACATCTTATCTTCACGTGTTCGTC
AACATCCTATGGTTCGCTAATCCCAGTCACGTGATGAAAGTCATCAACGT
TTATTACAATGTGTTGTTCCTGGTCATTGTATGGCTTCACTCGAACAGAA
GTTTGGTCTTCTCGCCCTCCATTGGTCCTTTCATCACTATCCTGGTGTAT
TCGACCAAAGCTGTGGTGCAGTTCGCTTTCTTGTTCGCTGAATTCTTCAT
CCCGTTCGTTTGTGGTTTTTATGTCATGTTCGGTGGTGTTCGAAAACGTA
AGTTAATCAATGGACAGAACCCTGGTAGAG

Coding sequence (CDS) from alignment at sc0000411:159611..163990-

>TCONS_00022334 ID=TCONS_00022334|Name=TCONS_00022334|organism=Clytia hemisphaerica|type=CDS|length=4860bp|location=Sequence derived from alignment at sc0000411:159611..163990- (Clytia hemisphaerica)
GTTCAGTTCGTACATGCAAGTACCTGTTGGAGAAAGAACTGCCAGCTTGT
ACGTACACAAGTTATGGAGCCACACCGCTTGAAATGATCTGTGCTAAGAT
GCCGCTCGANACACAAGTTATGGAGCCACTCCGCTTGAAATGACAAAAGT
TTCCGTTAAATGTAAGAGACCAGAGAGATACGAAGCGATTCATTACGCAG
CGGCTTTCGACGCACCCAAATCTCTAAAAGTGTTGATACAANATTTTACA
GCAAAAGTTTCCGTCAAATGTAAGAGACCAGAGAGATACGAAGCGATTCA
TTACGCAGCGGCTTTCGACGCACCCAAATCTCTAAAAGTGTTGATACAAC
ATGGTGTGCATCCTGATCGACGAAATGCTTTCCAAGAAACACCTCTCTTC
ATTGCCGCCAATACTGATGTGAACATGCGTGACGAATACGGACAAAGCCT
TTTACACGAAGTGGTTCGTGAGTGGCACACTGACGTCGCTCAGTTCCTCT
ACAACAGAAAGATCAACATTCATCAAACTGATCGCTACGGGCGGACGCCC
CTGATGGTGGCGGCAGCTAGTGATAACGATCTGATGGTGAAATGGCTCCT
TCAACGCGGTGAGGACCTGGATCAGTTGATTGGGCGGCGCTACATGAAGT
GTGGAGCGAATGGTATTGCACAGTTGAGTGAGAAGTTATTGAATGAAGAC
AACAAAGAGAATGACATCCCTATCTTGAAGTATTTCGCTCAACTTCACAT
GAAGAATTCTTTCTCTTTTGAATTCATCGGTGGATTACTGGAAGGACAAG
CAGATGTATTTCCACAAGTACAAAAGCGAAGCGGATGCTATCCTTCTGAG
AGAACAACAAGAAGAAGATGGAAGCGCAATCAACAAAACTACCAAAGAAA
CGGAGGATAGTTTCAACTTATCATTTGATATTCATGAGGAGCAAAGCGAA
GAATCTTTCGATGAGAGTCAAGGTTCAGTTCGTACATGCAAGTACCTGTT
GGAGAAAGAACTGCCAGCTTGTACGTACACAAGTTATGGAGCCACACCGC
TTGAAATGATCTGTGCTAAGATGCCGCTCGANACACAAGTTATGGAGCCA
CTCCGCTTGAAATGACAAAAGTTTCCGTTAAATGTAAGAGACCAGAGAGA
TACGAAGCGATTCATTACGCAGCGGCTTTCGACGCACCCAAATCTCTAAA
AGTGTTGATACAANATTTTACAGCAAAAGTTTCCGTCAAATGTAAGAGAC
CAGAGAGATACGAAGCGATTCATTACGCAGCGGCTTTCGACGCACCCAAA
TCTCTAAAAGTGTTGATACAACATGGTGTGCATCCTGATCGACGAAATGC
TTTCCAAGAAACACCTCTCTTCATTGCCGCCAATACTGATGTGAACATGC
GTGACGAATACGGACAAAGCCTTTTACACGAAGTGGTTCGTGAGTGGCAC
ACTGACGTCGCTCAGTTCCTCTACAACAGAAAGATCAACATTCATCAAAC
TGATCGCTACGGGCGGACGCCCCTGATGGTGGCGGCAGCTAGTGATAACG
ATCTGATGGTGAAATGGCTCCTTCAACGCGGTGAGGACCTGGATCAGTTG
ATTGGGCGGCGCTACATGAAGTGTGGAGCGAATGGTATTGCACAGTTGAG
TGAGAAGTTATTGAATGAAGACAACAAAGAGAATGACATCCCTATCTTGA
AGTATTTCGCTCAACTTCACATGAAGAATTCTTTCTCTTTTGAATTCATC
GGTGGATTACTGGAAGGACAAGCAGATGTATTTCCACAAGTACAAAAGCG
AAGCGGATGCTATCCTTCTGAGAGAACAACAAGAAGAAGATGGAAGCGCA
ATCAACAAAACTACCAAAGAAACGGAGGATAGTTTCAACTTATCATTTGA
TATTCATGAGGAGCAAAGCGAAGAATCTTTCGATGAGAGTCAAGGTTCAG
TTCGTACATGCAAGTACCTGTTGGAGAAAGAACTGCCAGCTTGTACGTAC
ACAAGTTATGGAGCCACACCGCTTGAAATGATCTGTGCTAAGATGCCGCT
CGANACACAAGTTATGGAGCCACTCCGCTTGAAATGACAAAAGTTTCCGT
TAAATGTAAGAGACCAGAGAGATACGAAGCGATTCATTACGCAGCGGCTT
TCGACGCACCCAAATCTCTAAAAGTGTTGATACAANATTTTACAGCAAAA
GTTTCCGTCAAATGTAAGAGACCAGAGAGATACGAAGCGATTCATTACGC
AGCGGCTTTCGACGCACCCAAATCTCTAAAAGTGTTGATACAACATGGTG
TGCATCCTGATCGACGAAATGCTTTCCAAGAAACACCTCTCTTCATTGCC
GCCAATACTGATGTGAACATGCGTGACGAATACGGACAAAGCCTTTTACA
CGAAGTGGTTCGTGAGTGGCACACTGACGTCGCTCAGTTCCTCTACAACA
GAAAGATCAACATTCATCAAACTGATCGCTACGGGCGGACGCCCCTGATG
GTGGCGGCAGCTAGTGATAACGATCTGATGGTGAAATGGCTCCTTCAACG
CGGTGAGGACCTGGATCAGTTGATTGGGCGGCGCTACATGAAGTGTGGAG
CGAATGGTATTGCACAGTTGAGTGAGAAGTTATTGAATGAAGACAACAAA
GAGAATGACATCCCTATCTTGAAGTATTTCGCTCAACTTCACATGAAGAA
TTCTTTCTCTTTTGAATTCATCGGTGGATTACTGGAAGGACAAGCAGATG
TATTTCCACAAGTACAAAAGCGAAGCGGATGCTATCCTTCTGAGAGAACA
ACAAGAAGAAGATGGAAGCGCAATCAACAAAACTACCAAAGAAACGGAGG
ATAGTTTCAACTTATCATTTGATATTCATGAGGAGCAAAGCGAAGAATCT
TTCGATGAGAGTCAAGGTTCAGTTCGTACATGCAAGTACCTGTTGGAGAA
AGAACTGCCAGCTTGTACGTACACAAGTTATGGAGCCACACCGCTTGAAA
TGATCTGTGCTAAGATGCCGCTCGANACACAAGTTATGGAGCCACTCCGC
TTGAAATGACAAAAGTTTCCGTTAAATGTAAGAGACCAGAGAGATACGAA
GCGATTCATTACGCAGCGGCTTTCGACGCACCCAAATCTCTAAAAGTGTT
GATACAANATTTTACAGCAAAAGTTTCCGTCAAATGTAAGAGACCAGAGA
GATACGAAGCGATTCATTACGCAGCGGCTTTCGACGCACCCAAATCTCTA
AAAGTGTTGATACAACATGGTGTGCATCCTGATCGACGAAATGCTTTCCA
AGAAACACCTCTCTTCATTGCCGCCAATACTGATGTGAACATGCGTGACG
AATACGGACAAAGCCTTTTACACGAAGTGGTTCGTGAGTGGCACACTGAC
GTCGCTCAGTTCCTCTACAACAGAAAGATCAACATTCATCAAACTGATCG
CTACGGGCGGACGCCCCTGATGGTGGCGGCAGCTAGTGATAACGATCTGA
TGGTGAAATGGCTCCTTCAACGCGGTGAGGACCTGGATCAGTTGATTGGG
CGGCGCTACATGAAGTGTGGAGCGAATGGTATTGCACAGTTGAGTGAGAA
GTTATTGAATGAAGACAACAAAGAGAATGACATCCCTATCTTGAAGTATT
TCGCTCAACTTCACATGAAGAATTCTTTCTCTTTTGAATTCATCGGTGGA
TTACTGGAAGGACAAGCAGATGTATTTCCACAAGTACAAAAGCGAAGCGG
ATGCTATCCTTCTGAGAGAACAACAAGAAGAAGATGGAAGCGCAATCAAC
AAAACTACCAAAGAAACGGAGGATAGTTTCAACTTATCATTTGATATTCA
TGAGGAGCAAAGCGAAGAATCTTTCGATGAGAGTCAAGGTTCAGTTCGTA
CATGCAAGTACCTGTTGGAGAAAGAACTGCCAGCTTGTACGTACACAAGT
TATGGAGCCACACCGCTTGAAATGATCTGTGCTAAGATGCCGCTCGANAC
ACAAGTTATGGAGCCACTCCGCTTGAAATGACAAAAGTTTCCGTTAAATG
TAAGAGACCAGAGAGATACGAAGCGATTCATTACGCAGCGGCTTTCGACG
CACCCAAATCTCTAAAAGTGTTGATACAANATTTTACAGCAAAAGTTTCC
GTCAAATGTAAGAGACCAGAGAGATACGAAGCGATTCATTACGCAGCGGC
TTTCGACGCACCCAAATCTCTAAAAGTGTTGATACAACATGGTGTGCATC
CTGATCGACGAAATGCTTTCCAAGAAACACCTCTCTTCATTGCCGCCAAT
ACTGATGTGAACATGCGTGACGAATACGGACAAAGCCTTTTACACGAAGT
GGTTCGTGAGTGGCACACTGACGTCGCTCAGTTCCTCTACAACAGAAAGA
TCAACATTCATCAAACTGATCGCTACGGGCGGACGCCCCTGATGGTGGCG
GCAGCTAGTGATAACGATCTGATGGTGAAATGGCTCCTTCAACGCGGTGA
GGACCTGGATCAGTTGATTGGGCGGCGCTACATGAAGTGTGGAGCGAATG
GTATTGCACAGTTGAGTGAGAAGTTATTGAATGAAGACAACAAAGAGAAT
GACATCCCTATCTTGAAGTATTTCGCTCAACTTCACATGAAGAATTCTTT
CTCTTTTGAATTCATCGGTGGATTACTGGAAGGACAAGCAGATGTATTTC
CACAAGTACAAAAGCGAAGCGGATGCTATCCTTCTGAGAGAACAACAAGA
AGAAGATGGAAGCGCAATCAACAAAACTACCAAAGAAACGGAGGATAGTT
TCAACTTATCATTTGATATTCATGAGGAGCAAAGCGAAGAATCTTTCGAT
GAGAGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012523XLOC_012523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022334-exon-sc0000411-1575043694:163776..163990TCONS_00022334-exon-sc0000411-1575043694:163776..163990Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1575043694:163270..163461TCONS_00022334-exon-sc0000411-1575043694:163270..163461Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1575043694:162823..163017TCONS_00022334-exon-sc0000411-1575043694:162823..163017Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1575043694:162244..162516TCONS_00022334-exon-sc0000411-1575043694:162244..162516Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1575043694:161597..161918TCONS_00022334-exon-sc0000411-1575043694:161597..161918Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1575043694:160997..161257TCONS_00022334-exon-sc0000411-1575043694:160997..161257Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1575043694:160584..160763TCONS_00022334-exon-sc0000411-1575043694:160584..160763Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1575043694:159611..159941TCONS_00022334-exon-sc0000411-1575043694:159611..159941Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:163776..163990TCONS_00022334-exon-sc0000411-1510915933:163776..163990Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:163270..163461TCONS_00022334-exon-sc0000411-1510915933:163270..163461Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:162823..163017TCONS_00022334-exon-sc0000411-1510915933:162823..163017Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:162244..162516TCONS_00022334-exon-sc0000411-1510915933:162244..162516Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:161597..161918TCONS_00022334-exon-sc0000411-1510915933:161597..161918Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:160997..161257TCONS_00022334-exon-sc0000411-1510915933:160997..161257Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:160584..160763TCONS_00022334-exon-sc0000411-1510915933:160584..160763Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1510915933:159611..159941TCONS_00022334-exon-sc0000411-1510915933:159611..159941Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:163776..163990TCONS_00022334-exon-sc0000411-1491911889:163776..163990Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:163270..163461TCONS_00022334-exon-sc0000411-1491911889:163270..163461Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:162823..163017TCONS_00022334-exon-sc0000411-1491911889:162823..163017Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:162244..162516TCONS_00022334-exon-sc0000411-1491911889:162244..162516Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:161597..161918TCONS_00022334-exon-sc0000411-1491911889:161597..161918Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:160997..161257TCONS_00022334-exon-sc0000411-1491911889:160997..161257Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:160584..160763TCONS_00022334-exon-sc0000411-1491911889:160584..160763Clytia hemisphaericaexon
TCONS_00022334-exon-sc0000411-1491911889:159611..159941TCONS_00022334-exon-sc0000411-1491911889:159611..159941Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022334-proteinTCONS_00022334-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:159611..163990 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.267953	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5.84468	2.10048	0.339857	0.950513	3.52605	1.69944	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00022334 vs. Swiss-Prot (Human)
Match: ANR28 (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5)

HSP 1 Score: 85.1149 bits (209), Expect = 6.433e-17
Identity = 70/215 (32.56%), Postives = 98/215 (45.58%), Query Frame = 2 
Query:  332 KYFAQLHMK-NSFSFEFIGGLLEGQADVNMRDEYGQSLLHEVVREWHTDVAQFLYNRKINIHQTDRYGRTPLMVAAASDNDLMVKWLLQRGAKVSVKCKRPERYEAIHYAAAFDAPKSLKVLIQXFTAKVSVKCKRPERYEAIHYAAAFDAPKSLKVLIQHGVHPDRRNAFQETPLFIAANTGSVRTCKYLLEKELPACTYTSYGATPLEMICAK 973
            K+   LH    S S E +  LL+  ADVN RD+  Q+ LH          A+ L     N++ +DR GRT L  AA S +  MVK LL RGA ++   K+  R  AIH+AA     + +K+L+        V CK  + Y  +H AA+      +K L+  GV  +  NA+  TPL +A   G       L++           G TPL    A 
Sbjct:   73 KWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRR--AIHWAAYMGHIEVVKLLVSH---GAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAAS 282
The following BLAST results are available for this feature:
BLAST of TCONS_00022334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANR286.433e-1732.56Serine/threonine-protein phosphatase 6 regulatory ... [more]
back to top