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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022338 ID=TCONS_00022338|Name=TCONS_00022338|organism=Clytia hemisphaerica|type=transcript|length=3231bp
GTtcgagatgccttggagtttttacaagatacttcactaattggtcattt
aaagtgatagagatgacgcgttctttagaaaaagtaataagattcttcta
ttacatcttaacgaccaaccaaatcaaataagagcttgtttCAAGAGATA
CCCTTTTTCCCAATCCAAGGGATTTGAGGAATTGCATAACTTGGGAGAGC
ACTCATATAATTGATGATTGTAATattatgtttcaaaaaaaagttatcaa
aactgGATGCTTTATGGATCCATAAATTTCTATAATAATTAAATTGATGA
ATATTATAATATCTGATGATAAACGAGTAAATATAAATAACAAATTGAAA
ATAAGGAGATACATATCAAAGTCACACAATAAAAAGGAAACTTTAATAGC
GAACGGCAGGATGTATGTAGAGTTCGAAACTAGTGATTGGGTTGATATTC
ACAGAATTAAGATAACAATTATGAAAAAATTGTTAAAGTGTAAATTTAAT
GTTAAAGCCGCCTAAAATTTCGTAGAAATGTaattttgaatgctaaaaac
cTCAAGGTATTCGTTGATACTTGTGTGACCGAGTGAAACAGATAATACAG
TTTGATTAAGAATACAGACACCATCGTTGAGTGGTTAAAAAAGAAGATAT
GATAGGTATGGTTAAAGACattcttaaaaaattgaaaatccaataaaata
aaacttaattAAAAAGTTAATGATGTGGTAAAACATCGCCAAACAAACAT
AAATATATCGATAAAAATTGTTATTGTAACTGTTGTCTTTTTAAggactt
aattttttttttcataaaacgaAAATTAGGCATTGAAATCGTTTGCTTGT
AGTTAATTTTTCTAGAAATAAATAATCTTTGTTATAtctatataaaaatt
taaaaaattctctttgtctctttttattaaaattcaTCTAAATTTAGAAC
ATCttattttggtaaaaaaatatttaaagatgCATTGGAGGTGCCTGCTC
TCCAAAGTGATATGGTACATATTGTGTGTAAGcaagttgaaaaaaaataa
gacaatttaaAAAACCTTCGTACGTGTGAATCGAAATTGCcatcaaattt
gtcgaaaacACATTCAAGTAAAAAATGCCATCCACTCTAAACTACAACAT
ACATCATAGTAGAACTAgtcttaaaataataaaaaaatcttctaaTTTAT
ACCCTTTCTAAATAGAACCATTTAAAAGtttcttgagaaaaataaaatga
atctaTAACATTTGGAGGCCAGGTCAGAAAACTTTACAGCTTTGCGCTGT
TTAGAAACGAACTACCTTTAGCTCCATTGGAAAAATTGCCattctgaaat
tatttttttcttgctttgtTGAGCTTAAAAGTACAATCTGCTTTTAAATC
AGGGCAACAAACTTATCGCAGGTTTCTAAATATAGTGATTCACCCGCTCA
AAGACAAAGCCGTATATAATCTGCAACGAGAAATACCCCTAGAATTCTGC
AATACCAAACCATTCTCATGCAAACCAACGTGTAAAATTGCTCAGCAGCA
TTTCTACAAACAGGGTGAATTTGATTATTCAAGATGGAGTAACTGCACTG
AAACAGTAAGATGTCAAAAGATGACTTTCAATCATATCGACTTTCCCACA
AACCCACACTCCGTTCACTCAGAATCACTGTCAGCGGTAAAATCGgagaa
gaatttttttgttttaatctcCTCCTCGGTGAGTTCAGTGGGCGGTTTCT
CGTCAATCGGCGGTTTATTGCTAGACACGTGCTTTATGGATTTTCGCTTA
AGATCTATGTGTTTCTGTGAGTCCTTCTTCTCTGAGTCCTTCTTCTTCTG
ATTGTCTTGAATTTTACGCATCAGTGAGCTGGGTGCTAACAGAGCAGGTG
CAGCGAATTTATTCCTGCGCGCTTCCAATCGTTTACGCTGATCGAGGGTG
ATGTCGATGGATTTGGCCGTTCCAGAAAACTCTTGATCTTTCTCATTGGC
CACTTCTTGTTGAGAGACGGCTGCGAGACCTCGATCACGTGTGCCATTAT
TCAATCTGACAGGCGATAATTTCCGATCCTTCGATTTGTCAAACGAATCG
CGATCTTCATCTTTCTTTCGGCCAGAACCGGAAGAGAGGCCACGATCTTT
CAAGGAGGAGACTCCTCTTTCTCGAGCTTTCTTCCACGAGGAGGTCTCAT
TTTCATCACGATGACGGTCTCTGGAGGAGGATGAGCCATAAGAATGGCGG
CTGCGTTTTGACGAAGAAGAGGAGCGATGGGAGGAGGAGCGGCGGTGGTG
GTGGTCATCGCTTTGGCGACGTCGCTTTTCCGATCGGCTGTGCGAATAAT
CGTTGTCATCAGAATCAACATCTCGCTTTCGTTTCTGTGACAACAAGCGC
TGGTATTGGTAGTTGGCATCATCTGAATCACTATCGTCATCCTCGTCACT
GGAGTATTCCACGCATCCATCTTTCTTCAATTTATCCAACATGTCGATGA
TAGAGGTGGCCAGTTTGATGTTCCCTTTCTCGATCAGATGCAAATGGTCG
GTGAAATAAAGCGATTCATCCAGCTGACCATCCTCCACGACCCAATCATC
ATCCTGCTTCATGTAATAAACTCCCTCAAAGTCTCTACGACACATCTTTT
TCACTATCTTGTTCACTTTCTTGATCTTATCACGTCGATAAGAGGACTGG
TGTAAATCCCTTGGTAACAAACCAGTCACTACCACTTTCAGGTCCGGAAC
TTTCTCTTGAAACGTGACGGCGATGGAGAGAATACCATTGGCGATGCAGG
TGGGCGTATCACGGTCGATGTTGTTGGTACCGCAATGCAAAACAACGAAC
TTGGTGTTGGGTGAGATGTCGAGGTTTTCAGCGCGCCACAACACGTGCTG
CGTTCGATCGCCTCCGATACCGAGGTTGAGGGCGTGCAACGGAGCGAaaa
actttctccaaatatcACTGTACCGAGAAAGACCAGCAACGATAGAGTCT
CCACATAAAATGTATTCTAGATTGGATCGTTTGGCCATGGATTCATGTTT
CTCATGCATGTTATACCATCCAGCTTTGTTGTCTCTACCGACAGGTCGTG
TTGCAGGCGATGTGTTATAGCCTGAGAGGTCGAGTTTGGATGAGAAGGAG
CCATTGTTGCTGTCGTATGATCGGTTTGACGGTGATTTGATGGGCGTTGA
ATACGAAGACATCTTTGATGAATAGACCGCC Run BLAST on NCBI transcript from alignment at sc0000411:195127..199391- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022338 ID=TCONS_00022338|Name=TCONS_00022338|organism=Clytia hemisphaerica|type=transcript|length=4265bp|location=Sequence derived from alignment at sc0000411:195127..199391- (Clytia hemisphaerica)
GTTCGAGATGCCTTGGAGTTTTTACAAGATACTTCACTAATTGGTCATTT
AAAGTGATAGAGATGACGCGTTCTTTAGAAAAAGTAATAAGATTCTTCTA
TTACATCTTAACGACCAACCAAATCAAATAAGAGCTTGTTTCAAGAGATA
CCCTTTTTCCCAATCCAAGGGATTTGAGGAATTGCATAACTTGGGAGAGC
ACTCATATAATTGATGATTGTAATATTATGTTTCAAAAAAAAGTTATCAA
AACTGGATGCTTTATGGATCCATAAATTTCTATAATAATTAAATTGATGA
ATATTATAATATCTGATGATAAACGAGTAAATATAAATAACAAATTGAAA
ATAAGGAGATACATATCAAAGTCACACAATAAAAAGGAAACTTTAATAGC
GAACGGCAGGATGTATGTAGAGTTCGAAACTAGTGATTGGGTTGATATTC
ACAGAATTAAGATAACAATTATGAAAAAATTGTTAAAGTGTAAATTTAAT
GTTAAAGCCGCCTAAAATTTCGTAGAAATGTAATTTTGAATGCTAAAAAC
CTCAAGGTATTCGTTGATACTTGTGTGACCGAGTGAAACAGATAATACAG
TTTGATTAAGAATACAGACACCATCGTTGAGTGGTTAAAAAAGAAGATAT
GATAGGTATGGTTAAAGACATTCTTAAAAAATTGAAAATCCAATAAAATA
AAACTTAATTAAAAAGTTAATGATGTGGTAAAACATCGCCAAACAAACAT
AAATATATCGATAAAAATTGTTATTGTAACTGTTGTCTTTTTAAGGACTT
AATTTTTTTTTTCATAAAACGAAAATTAGGCATTGAAATCGTTTGCTTGT
AGTTAATTTTTCTAGAAATAAATAATCTTTGTTATATCTATATAAAAATT
TAAAAAATTCTCTTTGTCTCTTTTTATTAAAATTCATCTAAATTTAGAAC
ATCTTATTTTGGTAAAAAAATATTTAAAGATGCATTGGAGGTGCCTGCTC
TCCAAAGTGATATGGTACATATTGTGTGTAAGCAAGTTGAAAAAAAATAA
GACAATTTAAAAAACCTTCGTACGTGTGAATCGAAATTGCCATCAAATTT
GTCGAAAACACATTCAAGTAAAAAATGCCATCCACTCTAAACTACAACAT
ACATCATAGTAGAACTAGTCTTAAAATAATAAAAAAATCTTCTAATTTAT
ACCCTTTCTAAATAGAACCATTTAAAAGGCTTCTTGAGAAAAATAAAATG
AATCTATAACATTTGGAGGCCAGGTCAGAAAACTTTACAGCTTTGCGCTG
TATAAACGAACTACCTTTAGCTCCATTGTAAAAATTGCCATTCTGAAATA
ATTTTTTTCTTGCTTTGTTGAGCTTAAAAGTACAATCTGCTTTTAAATCA
GGGCAACAAACTTATCGCAGGTTTCTAAATATAGTGATTCACNATAGCGA
ACGGCAGGATGTATGTAGAGTTCGAAACTAGTGCTTGGGTTGATATTCAC
AGAATTAAGATAGCAATTATGAAAAAATTGTTAAAGTGTAAGTTTAATAA
AATTTCGTAAAAATTTAATTTTGAATGCTAAAAACCTCAAGGTATTCGTT
GATACTTGTGTGACAGAGTGAAACAGATAATACAGTTTGATTAAGAATAC
AGACACCATCGTTGAGTGGTTAAAAAGAAGATATGATAGGTATGGTTAAA
GACATTCTTAAAAAATTGAAAATCCATTAAAATAAAACTTAATTAAAAAG
TTAATGATGTGGTAAAACATGGCCAAACAAACATAAATATATCGATAAAA
ATTGTTATTGTAACTGTTGTCTTTTTAAGGACTTAATTTTTTTTTTCATA
AAACGAAAATTAGGCATTGAAATCGTTTGCTTGTAGTTAATTTTTCTAGA
AATAAATAATCTTTGTTATATCTATATAAAAATTTAAAAAATTCTCTTTG
TCTCTTTTTATTAAAATTCATCTAAATTTAGAACATCTTATTTTGGTAAA
AAAATATTTAAAGATGCATTGGAGGTGCCTGCTCTCCAAAGTGATATGGT
ACATATTGTGTGTAAGCAAGTTGAAAAAAAATAAGACAATTTAAAAAACC
TTCGTACGTGTGAATCGAAATTGCCATCAAATTTGTCGAAAACACATTCA
AGTAAAAAATGCCATCCACTCTAAACTACAACATACATCATAGTAGAACT
AGTCTTGAAATAATAAAAAAATCTTCTAATTTATACCCTTTCTAAATAGA
ACCATTTAAAAGTTTCTTGAGAAAAATAAAATGAATCTATAACATTTGGA
GGCCAGGTCAGAAAACTTTACAGCTTTGCGCTGTTTAGAAACGAACTACC
TTTAGCTCCATTGGAAAAATTGCCATTCTGAAATTATTTTTTTCTTGCTT
TGTTGAGCTTAAAAGTACAATCTGCTTTTAAATCAGGGCAACAAACTTAT
CGCAGGTTTCTAAATATAGTGATTCACCCGCTCAAAGACAAAGCCGTATA
TAATCTGCAACGAGAAATACCCCTAGAATTCTGCAATACCAAACCATTCT
CATGCAAACCAACGTGTAAAATTGCTCAGCAGCATTTCTACAAACAGGGT
GAATTTGATTATTCAAGATGGAGTAACTGCACTGAAACAGTAAGATGTCA
AAAGATGACTTTCAATCATATCGACTTTCCCACAAACCCACACTCCGTTC
ACTCAGAATCACTGTCAGCGGTAAAATCGGAGAAGAATTTTTTTGTTTTA
ATCTCCTCCTCGGTGAGTTCAGTGGGCGGTTTCTCGTCAATCGGCGGTTT
ATTGCTAGACACGTGCTTTATGGATTTTCGCTTAAGATCTATGTGTTTCT
GTGAGTCCTTCTTCTCTGAGTCCTTCTTCTTCTGATTGTCTTGAATTTTA
CGCATCAGTGAGCTGGGTGCTAACAGAGCAGGTGCAGCGAATTTATTCCT
GCGCGCTTCCAATCGTTTACGCTGATCGAGGGTGATGTCGATGGATTTGG
CCGTTCCAGAAAACTCTTGATCTTTCTCATTGGCCACTTCTTGTTGAGAG
ACGGCTGCGAGACCTCGATCACGTGTGCCATTATTCAATCTGACAGGCGA
TAATTTCCGATCCTTCGATTTGTCAAACGAATCGCGATCTTCATCTTTCT
TTCGGCCAGAACCGGAAGAGAGGCCACGATCTTTCAAGGAGGAGACTCCT
CTTTCTCGAGCTTTCTTCCACGAGGAGGTCTCATTTTCATCACGATGACG
GTCTCTGGAGGAGGATGAGCCATAAGAATGGCGGCTGCGTTTTGACGAAG
AAGAGGAGCGATGGGAGGAGGAGCGGCGGTGGTGGTGGTCATCGCTTTGG
CGACGTCGCTTTTCCGATCGGCTGTGCGAATAATCGTTGTCATCAGAATC
AACATCTCGCTTTCGTTTCTGTGACAACAAGCGCTGGTATTGGTAGTTGG
CATCATCTGAATCACTATCGTCATCCTCGTCACTGGAGTATTCCACGCAT
CCATCTTTCTTCAATTTATCCAACATGTCGATGATAGAGGTGGCCAGTTT
GATGTTCCCTTTCTCGATCAGATGCAAATGGTCGGTGAAATAAAGCGATT
CATCCAGCTGACCATCCTCCACGACCCAATCATCATCCTGCTTCATGTAA
TAAACTCCCTCAAAGTCTCTACGACACATCTTTTTCACTATCTTGTTCAC
TTTCTTGATCTTATCACGTCGATAAGAGGACTGGTGTAAATCCCTTGGTA
ACAAACCAGTCACTACCACTTTCAGGTCCGGAACTTTCTCTTGAAACGTG
ACGGCGATGGAGAGAATACCATTGGCGATGCAGGTGGGCGTATCACGGTC
GATGTTGTTGGTACCGCAATGCAAAACAACGAACTTGGTGTTGGGTGAGA
TGTCGAGGTTTTCAGCGCGCCACAACACGTGCTGCGTTCGATCGCCTCCG
ATACCGAGGTTGAGGGCGTGCAACGGAGCGAAAAACTTTCTCCAAATATC
ACTGTACCGAGAAAGACCAGCAACGATAGAGTCTCCACATAAAATGTATT
CTAGATTGGATCGTTTGGCCATGGATTCATGTTTCTCATGCATGTTATAC
CATCCAGCTTTGTTGTCTCTACCGACAGGTCGTGTTGCAGGCGATGTGTT
ATAGCCTGAGAGGTCGAGTTTGGATGAGAAGGAGCCATTGTTGCTGTCGT
ATGATCGGTTTGACGGTGATTTGATGGGCGTTGAATACGAAGACATCTTT
GATGAATAGACCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022338-exon-sc0000411-1575043694:198164..199391 | TCONS_00022338-exon-sc0000411-1575043694:198164..199391 | Clytia hemisphaerica | exon |
| TCONS_00022338-exon-sc0000411-1575043694:195127..197129 | TCONS_00022338-exon-sc0000411-1575043694:195127..197129 | Clytia hemisphaerica | exon |
| TCONS_00022338-exon-sc0000411-1510915933:198164..199391 | TCONS_00022338-exon-sc0000411-1510915933:198164..199391 | Clytia hemisphaerica | exon |
| TCONS_00022338-exon-sc0000411-1510915933:195127..197129 | TCONS_00022338-exon-sc0000411-1510915933:195127..197129 | Clytia hemisphaerica | exon |
| TCONS_00022338-exon-sc0000411-1491911889:198164..199391 | TCONS_00022338-exon-sc0000411-1491911889:198164..199391 | Clytia hemisphaerica | exon |
| TCONS_00022338-exon-sc0000411-1491911889:195127..197129 | TCONS_00022338-exon-sc0000411-1491911889:195127..197129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:195127..199391 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013830 | SGNH_hydro |
Blast
BLAST of TCONS_00022338 vs. Swiss-Prot (Human)
Match: PA1B3 (Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.803e-25 Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = -2
Query: 2535 SPATRPVGRDNKAG---WYNMHEKHESMAKRSNLEYILCGDSIVAGLSRYSDIWRKFFAPLHALNLGIGGDRTQHVLWRAENLDISP-NTKFVVLHCGTNNIDRDTPTCIANGILSIAVTFQEKVPDLKVVVTGLLPRDLHQSSYRRDXXXXXXXXXXKMCRRDFEG---VYYMKQDDDWVVEDGQLDESLYFTDHLHL 3110
+PA++P + G W ++H + + +K E + GDS+V L +IWR+ F+PLHALN GIGGD TQHVLWR EN ++ K VV+ GTNN T + GI +I E+ P +VVV GLLPR H + R N+ V ++ R G +++ D +V DG + + D+LHL
Sbjct: 6 NPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQ-LMHQCEIWRELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNN-HGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLRE-----KNRQVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMY-DYLHL 196
The following BLAST results are available for this feature:
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