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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022343 ID=TCONS_00022343|Name=TCONS_00022343|organism=Clytia hemisphaerica|type=transcript|length=2726bpRun BLAST on NCBI protein sequence of TCONS_00022343-protein >TCONS_00022343-protein ID=TCONS_00022343-protein|Name=TCONS_00022343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=867bp TSNFLKLCVLKAIQSSNKHLDKIFNVDEFCRRFFAVIHSNDPIARSITLRRun BLAST on NCBI transcript from alignment at sc0000411:240142..261214- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022343 ID=TCONS_00022343|Name=TCONS_00022343|organism=Clytia hemisphaerica|type=transcript|length=21073bp|location=Sequence derived from alignment at sc0000411:240142..261214- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000411:240142..261214- >TCONS_00022343 ID=TCONS_00022343|Name=TCONS_00022343|organism=Clytia hemisphaerica|type=CDS|length=62496bp|location=Sequence derived from alignment at sc0000411:240142..261214- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022343 vs. Swiss-Prot (Human)
Match: INT7 (Integrator complex subunit 7 OS=Homo sapiens GN=INTS7 PE=1 SV=1) HSP 1 Score: 451.44 bits (1160), Expect = 1.864e-142 Identity = 299/886 (33.75%), Postives = 481/886 (54.29%), Query Frame = 2
Query: 8 NFLKLCVLKAIQSSNKHLDKIFNVDEFCRRFFAVIHSNDPIARSITLRVFGNISCIISERKNIHHCIRTSLDSHDVEEVEAAIFATKCFAEQSRSFASSIWQPVTEMIKGLVTPIDIKLKLIPVLKFMYHDTNVAKEIFAICEELLSSYPSHHFVVSALNATTQLAVPTLLHIPRQIDMLLRYTREEPRKSINHVAINNLLLLAKKTPHLWSEQQVQSLLEMGTDCLHLNIKIKTMNVLSLLASSCNCHQMFTKDVLDGLEYLTNDMSLEVSSLALKIKIQXXXXXXXXXXXXHR---------TCVQSD-----------IQTMLAMCCAEESFNALKNCLCAMQLFVKKYHGQ---SEELIAFICECLNNMNGECLLQVLHSLVTMATQIDGLCTDHVAGLMSLLKERLQGVEDKQQQDIIVGLLTLIFQSSYTFDSTAKNDVENEILQQLASSLTDHHMYWVLYRITRQASKLGLPNIXXXXXXXXXXXXXXXXXYFWLNSLQHFHEGESLLSQNADSSNGKLLEKLSASHDHYQEGLTNLKAAITTDHPLYFQFKYARLRADTLRAYSQLLACCSVFKLNPPPSNAFIQASKTGQDPYQFSRVAVQFQNCAAKFSGVAYGYQNLHKVSFNADQTTLNTIRCLQESCQLMVEAIESLFTPINHXXXXXXXXXXXXXXXXXXXKTGDNLFCRNVTKTNLHILQQLQ--NSKTEHLSIKNINVLTTIIQSQLNIAFSYPQFFYKRQQNTKIQLSVSPCNHMMEDPFLIHLNHQMTIKVEGVILNQPQSVYFRRASEVRIQLKMRPSDNVKNPSNEHKPVQVEDFV--LKESTPPHYDFFSAQFLVPFKYVGRHTIKISTGLTDEHGVDWDAGPSYTVFV-DVQEP 2581
NFL+LCVLK Q S KHL+KI NVDEF +R F+VIHSNDP+AR+ITLR+ G+++ II ERKN HH IR SLDSHD EVEAA+FA F+ QS+ FA I ++EMI+GL TP+D+KLKLIP+L+ M+HD +A + ++L++SYPS V+ +L+ T LA +L+ P+QI +LL+Y + +PRK++ +AI +L LLA KTPH WS + +Q+L E + ++K+ ++VLS L+ + F+ ++ G N S SS +K+ Q H +C + D ++++L +C ++S A A+ VK G+ S+ ++ + L++ + + H L +A Q+ L + LM L K + DK QQ+++V L T+IF +S S V I QQL S W +YRI RQAS++G ++A L + L ++VASE YFWLNSL+ F E L+ + + L ++ S Y +G+ +L AA T +PL FQ ++ +LR D L+A+SQL+ C+ K +PPP+ A A G D + R++ Q + +F +A Y +L++ SF+AD TL + Q+SC L+ AIE+L S + D+ + R + H+L++++ N K +S + L I + L + S+ ++F+++ Q+T I+L++SP +P + N Q+ +KVEGV+ + + FR+ V + + S +++ S + + +++ +++ PH D+FS QFL+ F +G H I + + + D +G+ W GP T+FV +++P
Sbjct: 77 NFLRLCVLKVTQQSEKHLEKILNVDEFVKRIFSVIHSNDPVARAITLRMLGSLASIIPERKNAHHSIRQSLDSHDNVEVEAAVFAAANFSAQSKDFAVGICNKISEMIQGLATPVDLKLKLIPILQHMHHDAILASSARQLLQQLVTSYPSTKMVIVSLHTFTLLAASSLVDTPKQIQLLLQYLKNDPRKAVKRLAIQDLKLLANKTPHTWSRENIQALCECALQTPYDSLKLGMLSVLSTLSGTIAIKHYFS--IVPG-----NVSSSPRSSDLVKLA-QECCYHNNRGIAAHGVRVLTNITVSCQEKDLLALEQDAVFGLESLLVLCSQDDSPGAQATLKIALNCMVKLAKGRPHLSQSVVETLLTQLHSAQDAARILMCHCLAAIAMQLPVLGDGMLGDLMELYKVIGRSATDK-QQELLVSLATVIFVASQKALSVESKAV---IKQQLESVSNG----WTVYRIARQASRMGNHDMAKELYQSLLTQVASEHFYFWLNSLKEFSHAEQCLTGLQEENYSSALSCIAESLKFYHKGIASLTAASTPLNPLSFQCEFVKLRIDLLQAFSQLICTCNSLKTSPPPAIATTIAMTLGNDLQRCGRISNQMKQSMEEFRSLASRYGDLYQASFDADSATLRNVELQQQSCLLISHAIEALI--------LDPESASFQEYGSTGTAHADSEYERRMMSVYNHVLEEVESLNRKYTPVSYMHTACLCNAIIALLKVPLSFQRYFFQKLQSTSIKLALSPSPRNPAEPIAVQNNQQLALKVEGVVQHGSKPGLFRKIQSVCLNV----SSTLQSKSGQDYKIPIDNMTNEMEQRVEPHNDYFSTQFLLNFAILGTHNITVESSVKDANGIVWKTGPRTTIFVKSLEDP 934 The following BLAST results are available for this feature:
BLAST of TCONS_00022343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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