TCONS_00022344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022344
Unique NameTCONS_00022344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022344 ID=TCONS_00022344|Name=TCONS_00022344|organism=Clytia hemisphaerica|type=transcript|length=317bp
ATagctaaacaaaaaaaaaataataataatcacATGAAAATTTATCCCAC
CCAATCAAACACAATTAAAGAATGTTGTCATCAGTTCAAAGATCAAACGA
TGAGAGCCCTATACCAACATCATCTGGCTTCAATAAAGATTTAAACACTG
ATGCAAATAATGCTCTTTTCGAACTAGAGAAAGGACTGAGAAGTCTGAAG
CTTGGAGAGCAATGTGAAGCTATCGTACAGTTATCAAATAAACTGGAAAA
ATATCCTTTCCCCTTACTTGTCAACTCTGCTTTCTTAAAACTGGCTGAAG
TCTTTCGCATGGGGTAA
Run BLAST on NCBI

transcript from alignment at sc0000411:261574..262014-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022344 ID=TCONS_00022344|Name=TCONS_00022344|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0000411:261574..262014- (Clytia hemisphaerica)
ATAGCTAAACAAAAAAAAAATAATAATAATCACATGAAAATTTATCCCAC
CCAATCAAACACAATTAAAGAATGTTGTCATCAGTTCAAAGATCAAACGA
TGAGAGCCCTATACCAACATCATCTGGCTTCAATAAAGATTTAAACACTG
ATGCAAATAATGCTCTTTTCGAACTAGAGAAAGGTATGTATGTTTTTATT
TTGTTTATGAAGGAGTAGTGGTGAAATTGTTTTTTAAAGATTGCAATCAT
GTCATTTGTTTGTAGTTCAGGAGGATGATTCTTTATCAATTTTTAATATC
TTTTAAGGACTGAGAAGTCTGAAGCTTGGAGAGCAATGTGAAGCTATCGT
ACAGTTATCAAATAAACTGGAAAAATATCCTTTCCCCTTACTTGTCAACT
CTGCTTTCTTAAAACTGGCTGAAGTCTTTCGCATGGGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012529XLOC_012529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022344-exon-sc0000411-1575043694:261832..262014TCONS_00022344-exon-sc0000411-1575043694:261832..262014Clytia hemisphaericaexon
TCONS_00022344-exon-sc0000411-1575043694:261574..261707TCONS_00022344-exon-sc0000411-1575043694:261574..261707Clytia hemisphaericaexon
TCONS_00022344-exon-sc0000411-1510915933:261832..262014TCONS_00022344-exon-sc0000411-1510915933:261832..262014Clytia hemisphaericaexon
TCONS_00022344-exon-sc0000411-1510915933:261574..261707TCONS_00022344-exon-sc0000411-1510915933:261574..261707Clytia hemisphaericaexon
TCONS_00022344-exon-sc0000411-1491911889:261832..262014TCONS_00022344-exon-sc0000411-1491911889:261832..262014Clytia hemisphaericaexon
TCONS_00022344-exon-sc0000411-1491911889:261574..261707TCONS_00022344-exon-sc0000411-1491911889:261574..261707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:261574..262014 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.7851	36.1915	14.5031	14.9167	20.3742	12.6	21.9575	16.6032	15.2223	19.8837	14.6411	19.0302	19.8775	19.5087	30.3992	42.6301	25.642	32.0946	18.1551	12.7871	15.2425	17.6576	29.3733	27.7317	33.8525	40.5981	5.8546	9.13197	19.6852	23.0274
Blast
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BLAST of TCONS_00022344 vs. Swiss-Prot (Human)
Match: INT7 (Integrator complex subunit 7 OS=Homo sapiens GN=INTS7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.219e-20
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 3 
Query:  150 DANNALFELEKGLRSLKLGEQCEAIVQLSNKLEKYPFPLLVNSAFLKLAEVFRMG 314
            DAN+AL EL+KGLRS KLGEQCEA+V+     +KYPFP+L+NSAFLKLA+VFR+G
Sbjct:   21 DANSALMELDKGLRSGKLGEQCEAVVRFPRLFQKYPFPILINSAFLKLADVFRVG 75
The following BLAST results are available for this feature:
BLAST of TCONS_00022344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INT71.219e-2070.91Integrator complex subunit 7 OS=Homo sapiens GN=IN... [more]
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