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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022345 ID=TCONS_00022345|Name=TCONS_00022345|organism=Clytia hemisphaerica|type=transcript|length=2637bpRun BLAST on NCBI protein sequence of TCONS_00022345-protein >TCONS_00022345-protein ID=TCONS_00022345-protein|Name=TCONS_00022345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=753bp LRYSIPPEHGKRLETLAKGFFSGSAQDCSEFMRHKMTLISPQILRKFSIPRun BLAST on NCBI transcript from alignment at sc0000411:262128..270257- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022345 ID=TCONS_00022345|Name=TCONS_00022345|organism=Clytia hemisphaerica|type=transcript|length=8130bp|location=Sequence derived from alignment at sc0000411:262128..270257- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000411:262128..270257- >TCONS_00022345 ID=TCONS_00022345|Name=TCONS_00022345|organism=Clytia hemisphaerica|type=CDS|length=38454bp|location=Sequence derived from alignment at sc0000411:262128..270257- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022345 vs. Swiss-Prot (Human)
Match: KDM4A (Lysine-specific demethylase 4A OS=Homo sapiens GN=KDM4A PE=1 SV=2) HSP 1 Score: 225.713 bits (574), Expect = 2.190e-61 Identity = 147/448 (32.81%), Postives = 208/448 (46.43%), Query Frame = 3
Query: 852 LKSIWKFEDEKKNAEITYNRTLSETETKCAICVFFSQRDAEYLHGEQAEESNKRHTLTELKCGKLLVTELCFAANNSEEDTIETAFNLMFGADGEQQDVKLLFCAKCHVAVHSVCYGVDMTXXXXXXXXRYTKWYCQKCXXXXXXXXXXXNFFKKEETESGIDEIVDVTSQACSVEELETDITCCLCMMRGGALKRTTCENWCHVVCAIALPEVFFEDKQRRDGINITKLNPARQKLHCIYCSHLKKPSSSITSSCVQCQCGKCATPFHVTCSLHNGIPLYLGDWPLLIETLCSKHSKRAKNNVEKTNKRELQSITMGDLVYAKHKNGRYYQGRVITVSTVLYYKVIFADKSFCFDLPPEDIQNVDA-KNQVQADGTSVDVLWTDSLSYPAEVTGHWYDTVSQVRFEDASILNVKRADLFIDGEDIPKRVKSKISYATETQNKSYFPE 2192
L +W+ AE +N T+++ CA+C+ F G N + + K L+ E+CF + D NL E L+ C KC V VH+ CYGV + W C +C S LE D CCLC +RGGAL+R + W HV CA+A+ E F + R ++++K+ R KL CI+C KK CVQC G+C T FHV+C+ G+ + DWP ++ C +H N+E+ K LQSIT G V +KHKNGR+YQ V+ ++T +Y+V F D SF +L PEDI + D + A+G V V WTD Y A+ + QV FED S L VKR D++ E++PKRVKS++S A++ + F E
Sbjct: 640 LSQLWQNRPPNFEAEKEFNETMAQQAPHCAVCMIFQTYHQVEFGGFNQNCGNASDLAPQKQRTKPLIPEMCFTSTGCSTD-----INLSTPYLEEDGTSILVSCKKCSVRVHASCYGVPPAKASE-------DWMCSRC----------------------------------SANALEED--CCLCSLRGGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCIFC---KKRRKRTAGCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHK---IPNLERA-KGALQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVASDMRFNEIFTE 1032 HSP 2 Score: 199.134 bits (505), Expect = 1.643e-52 Identity = 85/122 (69.67%), Postives = 102/122 (83.61%), Query Frame = 3
Query: 9 YSIPPEHGKRLETLAKGFFSGSAQDCSEFMRHKMTLISPQILRKFSIPVNKIVHNEGEFMVTFPYGYHAGFNLGFNIAESTNFASERWIEFGKKAKHCQCNRDSVKINMDVFIKKFQPEQWK 374
YS+PPEHGKRLE LAKGFF GSAQ C F+RHKMTLISP +L+K+ IP +K+ GEFM+TFPYGYHAGFN GFN AESTNFA+ RWIE+GK+A C C +D VKI+MDVF++KFQPE++K
Sbjct: 209 YSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERYK 330 The following BLAST results are available for this feature:
BLAST of TCONS_00022345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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