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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022350 ID=TCONS_00022350|Name=TCONS_00022350|organism=Clytia hemisphaerica|type=transcript|length=3886bp
ACACTCCTTATTTTGGCTTTACGGATTATCTTTTCTCACGGTTGAGTGGA
TCGTTCATTAAACGTTTATCTTAAAGTTTGTTCTCTTGGTTTGATTGGTG
GATTCTTTGCAACATTAGGCAATGTTTTTGTCAGGTTTGTACCGAAAATC
TCGTGCTTACGTAGTTGGTGGTTTGGTCTCTACCGAGAGCATTGTTCGAA
TTCCAGGGATTATCTTTTTTCTCACGATTTGTCGAATCGTTCGTTAAACG
TTTGTTTTCAGAGTTCATTCTAATTTTTTATTGGTGAATTTACAAAGCTA
TTTGATTGGTTGTATATTTGAAGAATAGAAGGCAGCTATCGTTGTTGTTA
GCTACGGCGTTAACTTTTATTAATAGAGGTTATAACTATAGAATAAATAT
GCTATTTACATTTAGTAAAGGATGTACTCGTGACATACCTCCCCCCTTAC
AtttggcgacctcgccaaaaaCTATAATACTAATAAATACTAAATACTTA
TAAATCTTTTGTAAAAATAGTGTGCCTGATTACATTCGCGGTAATATACA
ATTCAAAAGTGATACACATATGCGAGTAAATAGTTTTTGTTTGATGTTGT
CCTTTGTGGCTAAATATCCGGTACAACTTGATCGTTTTTACTAACAGGTT
TGGGGTTATGACGACGGGAATTATTCAATTCGGTGAGAATCGTTTTCCGA
TGTGTTGGGTTACGTTCTTGGTCGTATCCGGATGCGTCTCTGTGCATTCG
TGACGGTAAATTTAGTTGGTCAGTCATCAACGGAGTGCCGTCATATTTTG
AGCTGGAGACAATCGCTGATGCTCTTTCAAAACCAATTATCTCCAGCTCC
GAGACATATCTTCTCACATCCCGCCGTACTTTTCTTCCATCAGCCGTGTT
GTCAGTGCGGTCAGCAGATCCACCTGTGCCTGTAGGTTGGCTACCGTGTA
GGCATGGTACATCTGNGGAATTTATAACACTCCTTATTTTGGCTTTACGG
ATTATCTTTTCTCACGGTTGAGTGGATCGTTCATTAAACGTTTATCTTAA
AGTTTGTTCTCTTGGTTTGATTGGTGGATTCTTTGCAACATTAGGCAATG
TTTTTGTCAGGTTTGTACCGAAAATCTCGTGCTTACGTAGTTGGTGGTTT
GGTCTCTACCGAGAGCATTGTTCGAATTCCAGGGATTATCTTTTTTCTCA
CGATTTGTCGAATCGTTCGTTAAACGTTTGTTTTCAGAGTTCATTCTAAT
TTTTTATTGGTGAATTTACAAAGCTATTTGATTGGTTGTATATTTGAAGA
ATAGAAGGCAGCTATCGTTGTTGTTAGCTACGGCGTTAACTTTTATTAAT
AGAGGTTATAACTATAGAATAAATATGCTATTTACATTTAGTAAAGGATG
TACTCGTGACATACCTCCCCCCTTACAtttggcgacctcgccaaaaaCTA
TAATACTAATAAATACTAAATACTTATAAATCTTTTGTAAAAATAGTGTG
CCTGATTACATTCGCGGTAATATACAATTCAAAAGTGATACACATATGCG
AGTAAATAGTTTTTGTTTGATGTTGTCCTTTGTGGCTACTTATCCGGTAC
AACTTGATCGTTTTTACTAACAGGTTTGGGGTTATGACGACGGGAATTAT
TCAATTCGGTGAGAATCGTTTTCCGATGTGTTGGGTAACGTTCTTGGTCG
TATCCGGATGCGTCTCTGTGCATTCGTGACGGTAAATTTAGTTGGTCAGT
CATCAACGGAGTGCCGTCATATTTTGAGCTGGAGACAATCGCTGATGCTC
TTTCAAAACCAATTATCTCCAGCTCCGAGACATATCTTCTCACATCCCGC
CGTACTTTTCTTCCATCAGCCGTGTTGTCAGTGCGGTCAGCAGATCCACC
TGTGCCTGTAGGTTGGCTACCGTGTAGGCATGGTACATCTGCTGCCTAAC
ACCTGTCGGAATTTCGATGTTTGTGTCCAGAACAGCTGTGTTTACTTCAA
TCTACAGACCCCTGGGAAACAATCCATCTTCTACTGGGATGCTCCAAGCG
GTTTCATTATTTCTGCTTTCTTCGTTAGTTGCCATTTTGTTTTGGGATAG
TCTTTCTGGGCTATTTATACGTTTGGGCGGCTTTAGTGCAGCATCCATTG
TACGTCCTATGTTCGTTCGTTCTGTTATAATTTTCTGTTGAATTCTGGAC
GGGGGTCATCATTTCTGAATCTCCCGGCATGAGAGCTTTTGGCCATAGGA
GATTAATGGaagttttgaactttttaatcattttttaagTATTATTAGTT
TTGCACGCTTATGTACGATATAATATGATTCGTCTGTTGGTTGGATTTTC
AAGTGTTATAGAGTTTATATCGTTTATGTGGTTTATATTTagttgtattt
tttttgtttttcttgactTTTAGTTCAGTTCGACGTATGGGGTGCAACCA
GCTTGTCCCCCCGTAGGTTTGGATACGTTGTATTTACGTCCATTTCACGT
TGTCTATGGACCGGACATTTTGCCTCCCTGGGAAAGTTTTTCATCTCTAT
AATGTCTGTAACCAcatcttcttttcttttgaatatatttttaaacattC
CAGGGTTTTTGTTGAACAGTATGTATCCCACCGCTATCATTATGAACAAT
ATTACGATTGTTCTAACAATTCCGGATATTCCTCCCATTGCGCTTGCAAA
TCCATGACCTGCTCCTTCCAGAGCTTGTCCAGCGGCTGGAAGAATAACAG
CACTTGCATTTGCCAATGAATTTATTAAGCCTTTGTCCACTTCGTTCACT
CCTTCTAGTGACTCGTGTACCCAAGCTCTTTATGATCATGCTTCCGCTAT
TTCCGATACCCATTAACGCGTGACCGAGAGCTTTACCGATACTTTCTATG
AAGTTTGATCCCGGATCTGCAGATACGGTATCATGCATGTCACTTATGGT
TTGCCCAGTTGAAGTAATCAGCTGCAATATTGAGTATTGATCCATTCTTG
GCGGTCTGGGTTCGTATAGTTCTGAGTTGAATCCGGAAATTAATTCATTC
GTGTTGCACGGTTTCTTATGTAGGACAGTTTGGCTGGAACTATTTTTCCT
GTTGGTCCTACTGAGTATGCATTGTTCAGGGCATCTACAATATAGGTCCC
ATTGGGTCTTTCACTGCAGTCAATCCTGTTGCGCGTGTGTAGAAGTGATA
TGCTTGGTAGGTTGAGAAAATACACCTTCTTTACGTATGGAATGTATATA
GGAAAGTGCGTGTAACACGTGTTGTTGTGACGCCTGTCCTATGCTATTGA
ATAGGATGTGATTTCGAAACATTTACTGATAATTATTCTATCGCCATTTG
CCTCGAAGTGGTATCCTTTCTTGTAAAACCAATTGGTACTGCTGTCTGGG
AAGGTAGATAGAATCCACCTTTCGATCTTCTGTATTCTTTGATTTTCGAC
ACATATAGAATTCCAGGTATCTATGAGGTTCAGCCTTTCAGTTTGGTAAA
GTGCCGCTAGATGGGCTTCGACTAGCGACCAATGTTCATCGTTTGGAATA
TACTTTCTCATAGATTTGGTGTATTGTAGCATAGTATCGACGGTAGTTTG
TGATGGCGTTTTTGTTTGAATGACATAGCCATTGTCCAAAACATACGATC
CTTGTTTTTTCATAATAATTGCCCCTCCGATTTTAAGCTTTCTAACTAAG
ACCATATCACCCATCATCTTTATAGTGTGGATTCCTTTAGAATGGTATAC
ATTGGCGTCAAGATTTGTTGGCAGCTGAGTACTGACGGCATGTCTTCCTT
TGGTCTGCAAAACCTTTTCTTGTAGGGACATTGTGATTTTGGATTTTGAG
ACTGCTTGGTGAAGGTTTTCTTTTCCTCCAATTATA Run BLAST on NCBI protein sequence of TCONS_00022350-protein >TCONS_00022350-protein ID=TCONS_00022350-protein|Name=TCONS_00022350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
IIGGKENLHQAVSKSKITMSLQEKVLQTKGRHAVSTQLPTNLDANVYHSK
GIHTIKMMGDMVLVRKLKIGGAIIMKKQGSYVLDNGYVIQTKTPSQTTVD
TMLQYTKSMRKYIPNDEHWSLVEAHLAALYQTERLNLIDTWNSICVENQR
IQKIERWILSTFPDSSTNWFYKKGYHFEANGDRIIISKCFEITSYSIA Run BLAST on NCBI transcript from alignment at sc0000411:81065..84950 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022350 ID=TCONS_00022350|Name=TCONS_00022350|organism=Clytia hemisphaerica|type=transcript|length=3886bp|location=Sequence derived from alignment at sc0000411:81065..84950 (Clytia hemisphaerica)
TATAATTGGAGGAAAAGAAAACCTTCACCAAGCAGTCTCAAAATCCAAAA
TCACAATGTCCCTACAAGAAAAGGTTTTGCAGACCAAAGGAAGACATGCC
GTCAGTACTCAGCTGCCAACAAATCTTGACGCCAATGTATACCATTCTAA
AGGAATCCACACTATAAAGATGATGGGTGATATGGTCTTAGTTAGAAAGC
TTAAAATCGGAGGGGCAATTATTATGAAAAAACAAGGATCGTATGTTTTG
GACAATGGCTATGTCATTCAAACAAAAACGCCATCACAAACTACCGTCGA
TACTATGCTACAATACACCAAATCTATGAGAAAGTATATTCCAAACGATG
AACATTGGTCGCTAGTCGAAGCCCATCTAGCGGCACTTTACCAAACTGAA
AGGCTGAACCTCATAGATACCTGGAATTCTATATGTGTCGAAAATCAAAG
AATACAGAAGATCGAAAGGTGGATTCTATCTACCTTCCCAGACAGCAGTA
CCAATTGGTTTTACAAGAAAGGATACCACTTCGAGGCAAATGGCGATAGA
ATAATTATCAGTAAATGTTTCGAAATCACATCCTATTCAATAGCATAGGA
CAGGCGTCACAACAACACGTGTTACACGCACTTTCCTATATACATTCCAT
ACGTAAAGAAGGTGTATTTTCTCAACCTACCAAGCATATCACTTCTACAC
ACGCGCAACAGGATTGACTGCAGTGAAAGACCCAATGGGACCTATATTGT
AGATGCCCTGAACAATGCATACTCAGTAGGACCAACAGGAAAAATAGTTC
CAGCCAAACTGTCCTACATAAGAAACCGTGCAACACGAATGAATTAATTT
CCGGATTCAACTCAGAACTATACGAACCCAGACCGCCAAGAATGGATCAA
TACTCAATATTGCAGCTGATTACTTCAACTGGGCAAACCATAAGTGACAT
GCATGATACCGTATCTGCAGATCCGGGATCAAACTTCATAGAAAGTATCG
GTAAAGCTCTCGGTCACGCGTTAATGGGTATCGGAAATAGCGGAAGCATG
ATCATAAAGAGCTTGGGTACACGAGTCACTAGAAGGAGTGAACGAAGTGG
ACAAAGGCTTAATAAATTCATTGGCAAATGCAAGTGCTGTTATTCTTCCA
GCCGCTGGACAAGCTCTGGAAGGAGCAGGTCATGGATTTGCAAGCGCAAT
GGGAGGAATATCCGGAATTGTTAGAACAATCGTAATATTGTTCATAATGA
TAGCGGTGGGATACATACTGTTCAACAAAAACCCTGGaatgtttaaaaat
atattcaaaagaaaagaagatgTGGTTACAGACATTATAGAGATGAAAAA
CTTTCCCAGGGAGGCAAAATGTCCGGTCCATAGACAACGTGAAATGGACG
TAAATACAACGTATCCAAACCTACGGGGGGACAAGCTGGTTGCACCCCAT
ACGTCGAACTGAACTAAAagtcaagaaaaacaaaaaaaatacaactAAAT
ATAAACCACATAAACGATATAAACTCTATAACACTTGAAAATCCAACCAA
CAGACGAATCATATTATATCGTACATAAGCGTGCAAAACTAATAATActt
aaaaaatgattaaaaagttcaaaacttCCATTAATCTCCTATGGCCAAAA
GCTCTCATGCCGGGAGATTCAGAAATGATGACCCCCGTCCAGAATTCAAC
AGAAAATTATAACAGAACGAACGAACATAGGACGTACAATGGATGCTGCA
CTAAAGCCGCCCAAACGTATAAATAGCCCAGAAAGACTATCCCAAAACAA
AATGGCAACTAACGAAGAAAGCAGAAATAATGAAACCGCTTGGAGCATCC
CAGTAGAAGATGGATTGTTTCCCAGGGGTCTGTAGATTGAAGTAAACACA
GCTGTTCTGGACACAAACATCGAAATTCCGACAGGTGTTAGGCAGCAGAT
GTACCATGCCTACACGGTAGCCAACCTACAGGCACAGGTGGATCTGCTGA
CCGCACTGACAACACGGCTGATGGAAGAAAAGTACGGCGGGATGTGAGAA
GATATGTCTCGGAGCTGGAGATAATTGGTTTTGAAAGAGCATCAGCGATT
GTCTCCAGCTCAAAATATGACGGCACTCCGTTGATGACTGACCAACTAAA
TTTACCGTCACGAATGCACAGAGACGCATCCGGATACGACCAAGAACGTT
ACCCAACACATCGGAAAACGATTCTCACCGAATTGAATAATTCCCGTCGT
CATAACCCCAAACCTGTTAGTAAAAACGATCAAGTTGTACCGGATAAGTA
GCCACAAAGGACAACATCAAACAAAAACTATTTACTCGCATATGTGTATC
ACTTTTGAATTGTATATTACCGCGAATGTAATCAGGCACACTATTTTTAC
AAAAGATTTATAAGTATTTAGTATTTATTAGTATTATAGtttttggcgag
gtcgccaaaTGTAAGGGGGGAGGTATGTCACGAGTACATCCTTTACTAAA
TGTAAATAGCATATTTATTCTATAGTTATAACCTCTATTAATAAAAGTTA
ACGCCGTAGCTAACAACAACGATAGCTGCCTTCTATTCTTCAAATATACA
ACCAATCAAATAGCTTTGTAAATTCACCAATAAAAAATTAGAATGAACTC
TGAAAACAAACGTTTAACGAACGATTCGACAAATCGTGAGAAAAAAGATA
ATCCCTGGAATTCGAACAATGCTCTCGGTAGAGACCAAACCACCAACTAC
GTAAGCACGAGATTTTCGGTACAAACCTGACAAAAACATTGCCTAATGTT
GCAAAGAATCCACCAATCAAACCAAGAGAACAAACTTTAAGATAAACGTT
TAATGAACGATCCACTCAACCGTGAGAAAAGATAATCCGTAAAGCCAAAA
TAAGGAGTGTTATAAATTCCNCAGATGTACCATGCCTACACGGTAGCCAA
CCTACAGGCACAGGTGGATCTGCTGACCGCACTGACAACACGGCTGATGG
AAGAAAAGTACGGCGGGATGTGAGAAGATATGTCTCGGAGCTGGAGATAA
TTGGTTTTGAAAGAGCATCAGCGATTGTCTCCAGCTCAAAATATGACGGC
ACTCCGTTGATGACTGACCAACTAAATTTACCGTCACGAATGCACAGAGA
CGCATCCGGATACGACCAAGAACGTAACCCAACACATCGGAAAACGATTC
TCACCGAATTGAATAATTCCCGTCGTCATAACCCCAAACCTGTTAGTAAA
AACGATCAAGTTGTACCGGATATTTAGCCACAAAGGACAACATCAAACAA
AAACTATTTACTCGCATATGTGTATCACTTTTGAATTGTATATTACCGCG
AATGTAATCAGGCACACTATTTTTACAAAAGATTTATAAGTATTTAGTAT
TTATTAGTATTATAGtttttggcgaggtcgccaaaTGTAAGGGGGGAGGT
ATGTCACGAGTACATCCTTTACTAAATGTAAATAGCATATTTATTCTATA
GTTATAACCTCTATTAATAAAAGTTAACGCCGTAGCTAACAACAACGATA
GCTGCCTTCTATTCTTCAAATATACAACCAATCAAATAGCTTTGTAAATT
CACCAATAAAAAATTAGAATGAACTCTGAAAACAAACGTTTAACGAACGA
TTCGACAAATCGTGAGAAAAAAGATAATCCCTGGAATTCGAACAATGCTC
TCGGTAGAGACCAAACCACCAACTACGTAAGCACGAGATTTTCGGTACAA
ACCTGACAAAAACATTGCCTAATGTTGCAAAGAATCCACCAATCAAACCA
AGAGAACAAACTTTAAGATAAACGTTTAATGAACGATCCACTCAACCGTG
AGAAAAGATAATCCGTAAAGCCAAAATAAGGAGTGT Coding sequence (CDS) from alignment at sc0000411:81065..84950 >TCONS_00022350 ID=TCONS_00022350|Name=TCONS_00022350|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000411:81065..84950 (Clytia hemisphaerica)
ATAATTGGAGGAAAAGAAAACCTTCACCAAGCAGTCTCAAAATCCAAAAT
CACAATGTCCCTACAAGAAAAGGTTTTGCAGACCAAAGGAAGACATGCCG
TCAGTACTCAGCTGCCAACAAATCTTGACGCCAATGTATACCATTCTAAA
GGAATCCACACTATAAAGATGATGGGTGATATGGTCTTAGTTAGAAAGCT
TAAAATCGGAGGGGCAATTATTATGAAAAAACAAGGATCGTATGTTTTGG
ACAATGGCTATGTCATTCAAACAAAAACGCCATCACAAACTACCGTCGAT
ACTATGCTACAATACACCAAATCTATGAGAAAGTATATTCCAAACGATGA
ACATTGGTCGCTAGTCGAAGCCCATCTAGCGGCACTTTACCAAACTGAAA
GGCTGAACCTCATAGATACCTGGAATTCTATATGTGTCGAAAATCAAAGA
ATACAGAAGATCGAAAGGTGGATTCTATCTACCTTCCCAGACAGCAGTAC
CAATTGGTTTTACAAGAAAGGATACCACTTCGAGGCAAATGGCGATAGAA
TAATTATCAGTAAATGTTTCGAAATCACATCCTATTCAATAGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022350-exon-sc0000411-1491911889:81065..84950 | TCONS_00022350-exon-sc0000411-1491911889:81065..84950 | Clytia hemisphaerica | exon |
| TCONS_00022350-exon-sc0000411-1510915933:81065..84950 | TCONS_00022350-exon-sc0000411-1510915933:81065..84950 | Clytia hemisphaerica | exon |
| TCONS_00022350-exon-sc0000411-1575043694:81065..84950 | TCONS_00022350-exon-sc0000411-1575043694:81065..84950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:81065..84950 . |
Blast
The following BLAST results are available for this feature:
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