TCONS_00022416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022416
Unique NameTCONS_00022416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022416 ID=TCONS_00022416|Name=TCONS_00022416|organism=Clytia hemisphaerica|type=transcript|length=837bp
tatctatagaggtctgcgattcagactatagaCACTCGGGTCTGTAGAGT
TGATTTAAATCAAATAAGAAGTTTTCGAGGATtttcttttttaccttttt
tgacgatttttcttACTATGACGCACATTTTACATAAATGGATATTTATG
TTGACATGAAATTATATGTTTTTGTGGCGATTTTGGTTTAGATTGTGCTA
TTTCTGTGATTTTTgttgttatttaactgaaagattCTACAGAGCGATAT
ATCTCCCCTTTTTTAtcatcaatttttaatttcCTGATGAAAAAGAGTTT
GATTGACAACTTGATGAAAAATCTATTGTTTTTCAGTTGATTGACAACTG
AGTACGAACCTAGTTTTTTTACTAGTTTTTCtcgttttgatgaaaaaagt
cAGACAGACCTCCCGGTTGAACTTTGAACTTTATGGTGATAGTACAAAGG
TTCGTCAGACAGAACAAAGTGTGGTTTCTCATgcacgaatgtaaacaaac
tttttttgtaCAGGATATCTATGCAAACAAAATAATACCCACTTCCCCCT
GTCAGGACACTCAAGCATGAAAACAAAATCGTCAACTTTTCATTGCTGAC
CTCACTTGATAAAGTCTAGGTACTAGTACCTTAGGGGTGtaactaggttt
gcgaggtgacgggtatgtctgagccaaaaatcgaaaatcaagCCTTAAAG
AGAGGAAGAATTGGcgttttgggacccttagagagactttctcacaattt
tttttcgatttttactCGATGAAAGTGGTGAAAGTTTTGTTCTCAGTTTG
GGATGAAAAtgtctattgaaatcccaaggaagattga
Run BLAST on NCBI

transcript from alignment at sc0000414:221254..222090

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022416 ID=TCONS_00022416|Name=TCONS_00022416|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at sc0000414:221254..222090 (Clytia hemisphaerica)
tcaatcttccttgggatttcaatagacaTTTTCATCCCAAACTGAGAACA
AAACTTTCACCACTTTCATCGagtaaaaatcgaaaaaaaattgtgagaaa
gtctctctaagggtcccaaaacgCCAATTCTTCCTCTCTTTAAGGcttga
ttttcgatttttggctcagacatacccgtcacctcgcaaacctagttaCA
CCCCTAAGGTACTAGTACCTAGACTTTATCAAGTGAGGTCAGCAATGAAA
AGTTGACGATTTTGTTTTCATGCTTGAGTGTCCTGACAGGGGGAAGTGGG
TATTATTTTGTTTGCATAGATATCCTGtacaaaaaaagtttgtttacatt
cgtgcATGAGAAACCACACTTTGTTCTGTCTGACGAACCTTTGTACTATC
ACCATAAAGTTCAAAGTTCAACCGGGAGGTCTGTCTgacttttttcatca
aaacgaGAAAAACTAGTAAAAAAACTAGGTTCGTACTCAGTTGTCAATCA
ACTGAAAAACAATAGATTTTTCATCAAGTTGTCAATCAAACTCTTTTTCA
TCAGgaaattaaaaattgatgaTAAAAAAGGGGAGATATATCGCTCTGTA
GaatctttcagttaaataacaacAAAAATCACAGAAATAGCACAATCTAA
ACCAAAATCGCCACAAAAACATATAATTTCATGTCAACATAAATATCCAT
TTATGTAAAATGTGCGTCATAGTaagaaaaatcgtcaaaaaaggtaaaaa
agaaaATCCTCGAAAACTTCTTATTTGATTTAAATCAACTCTACAGACCC
GAGTGtctatagtctgaatcgcagacctctatagata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012573XLOC_012573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022416-exon-sc0000414-1491911889:221254..222090TCONS_00022416-exon-sc0000414-1491911889:221254..222090Clytia hemisphaericaexon
TCONS_00022416-exon-sc0000414-1510915933:221254..222090TCONS_00022416-exon-sc0000414-1510915933:221254..222090Clytia hemisphaericaexon
TCONS_00022416-exon-sc0000414-1575043694:221254..222090TCONS_00022416-exon-sc0000414-1575043694:221254..222090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:221254..222090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0564932	0.0550898	0	0.0625793	0.228553	0	0.217893	0.0679962	0.428452	0.353804	0	0.225745	0.0375719	0	0.128315	0.103276	0.254455	0.173872	0.120107	0.125683	0.327725	0.319706	0.064774	0.058889	0.121309	0.162397	0.154927	0	0	0.0638845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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