TCONS_00022425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022425
Unique NameTCONS_00022425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022425 ID=TCONS_00022425|Name=TCONS_00022425|organism=Clytia hemisphaerica|type=transcript|length=640bp
AAAACACTCACTGATTTTTTTAAGAAtggtaaaaaaataaagaaagacaA
AACTAACTCACATGATTCTACATTTGACTGATGGATATGGTTTGTCATGG
AGccttttaaatttgtttttgttttgtttaactgcgccattttcaacttc
aaaacagCATCTTCTTGTATGGCATTGACAGGTCCTGCAGGTCAGAAAAA
ATGTATGTCTATTACTGGTTACAATGGATTGCAATGGGCTACTTGCTTAA
CATCGACTTTTGTGGAACGAAAATCTTCAGGTCGGCACAAATGTAAATAT
TACTATTACAAATTTTGTTGGTACCAATGTGAGATGGACGTCAACAACCG
TGGAAGCGGCGCCATCTCAACACCGTGTCAATGCCAGACATTAAATGAAG
TGATGATGCCAGATTTAccagGTGATTGTTACAGCCCTTCTGGTGATAAT
TGCAATTGGTATACCACTTGTCTCCTACCATCAACACAATGTTCTACTGA
GCGATTCAAATACACTGTCACTTTTCTACAAGAGTTGTGCAAGATGGCAT
CGAACACTACTTTTTCTTCTGCTGCAAGAAATTGGTTTAAAGAAGCTCAA
GGATGTATCCAAATTGAATTGACCTTGCTTTTAAAAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00022425-protein

>TCONS_00022425-protein ID=TCONS_00022425-protein|Name=TCONS_00022425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MEPFKFVFVLFNCAIFNFKTASSCMALTGPAGQKKCMSITGYNGLQWATC
LTSTFVERKSSGRHKCKYYYYKFCWYQCEMDVNNRGSGAISTPCQCQTLN
EVMMPDLPGDCYSPSGDNCNWYTTCLLPSTQCSTERFKYTVTFLQELCKM
ASNTTFSSAARNWFKEAQGCIQIELTLLLKV
Run BLAST on NCBI

transcript from alignment at sc0000417:11509..16494-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022425 ID=TCONS_00022425|Name=TCONS_00022425|organism=Clytia hemisphaerica|type=transcript|length=4986bp|location=Sequence derived from alignment at sc0000417:11509..16494- (Clytia hemisphaerica)
AAAACACTCACTGATTTTTTTAAGGTAATGCAGTAGTTTTAATACAAATT
CGTGAATCAATCGTTATTTTATTTTCTGATAAATTAGACCGATAATATTC
ATACACCGGGATACTTCACATGAGATGAAGTTTTATTTTTGATATGCACC
ACTGCAATGTCTTCTGACATTACGTCACAGAACCAATAGCTCATTAGTTG
GAAGTGACCTAAAATCAGTCAATACGTCACTTTCAACCAATCAGCTATTG
GGTGGAACGGAAGACATTGCAATGGTGCATATCATGAATAAGATACTTTG
ATAATTGGTCATTTGAAGTAATGAAAATGACGCGTTCTTTAGAAAAAGTA
ACGAAATTTTTTTATTACTGGTTACCGACCAACCAAATCGAATATAAAAG
CTTGTAAAAGCTCCATCCATCTCGAATACTTACGGCATCATTGGAGAGCT
ATAGTAATTATTATTTTGCAGAATGGTAAAAAAATAAAGAAAGACAAAAC
TAACTCACATGATTCTACATTTGACTGATGGATATGGTTTGTCATGGAGC
CTTTTAAATTTGTTTTTGTTTTGTTTAACTGCGCCATTTTCAACTTCAAA
ACAGGTATGTTTTTAAAATAAGTCTGCTAGGGGGGATTGTACTTTTACGG
TGTGACGGGATTGGCCCTTTTTTAGTACAGTATTACTGGGTTTGACGAAA
AAAGAGACATGAAAACGGTATTTTAAAATCAGACGGTGACAATATTTAGC
GCTTTTTGTTTGTCAGTATTCCGGTATTTTAATCTCTAAAAACCGGTGTG
ATGGTGTTATCATTTTTATCAATTTTCGGGATTCCGAGATTGCAAGAATT
ATGACGGGAAAACGGTATTTCGAACCCCTACAAATCCCTGCAATGGTTAA
AGATGCTACTCTAGCCCTTCGGGCTTTAAAATCATAGGTCTCAATGTACC
AAGGGTTATAACATAAAATCAAAAATCAAAAGCACTTAGTCTCAGTGCAG
GTCTTTATTGTACTTTCCGCAAAGAAGAAACTGTAATAGGAACGAATGTG
TGTCGTTTCGATGGTCAATCTAGAATCACTCTGCCATAACATATTGGCAA
TTTTGGCTATTTTACCATTTTTCGAAAATTGAAATTCAAGCGAGAATGGC
TTTCAACTTGATTCCATCGAATATTTCGATCTGAGAGAGATTTATTGGAT
TTTAGGCTATATTTCAAGCCGTGCTGGACAATTTTTGAACTTATGGATCT
TTAGACTAGCGTTAAAACTCTACCCTTCCCACCAAATTTAGAGCACTTCC
AAATTGTTTAACCCTATTCGACCTAGGGGGGGGGGGCTCTTTCTGTTCGG
AGGTCAAACTATTGGTAATAGCTCCTGAAATAATAGAACTTTTGCCGTGA
AATTTTCTGTAAATTCCCAACTTTGATTTACCTTCAAAATAAATAAAAAA
TTGACACCTAAAAATTTTCACACCTTGAGCATGATGACTTTTCTGACAGA
AAGGTGTCACAAAAATTGACACTTTTACCATACAAATTTATTTCTAATGT
CAAATATGTCGTTTAAACCGTAATTTATTGAATATTTAGGATATAATAAG
CATTTTAAACTCAGGCAACTTTTTTCTAAAGCCTTTGTTAGAATACAATA
GCTATTTATAAGAACAAAGGAAATTTTCGGTTTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCCCCCCCCCCAGTTCTGAACCGCCCCTAAAAGCCTAGGTTGAATAGG
GTTTTTAAGGTTATAAAATTTCGTGGGGAATTTCCCTTGTGTGTTAAGTA
TTTTGGTACTGATTATAGATTGCCTTCCTCACATTAGGACCAAAGTCAAA
AAAATTAGATTCGAAGTTTTTAAAACCCTTATTGTGTAATTACAAAGGTC
CAAAAGATTCCGCGGCCGTTTCTGAAAAACTATAAATTGTTAAGTTGTCT
TTTTCAGGAGAAAGCTTATGACTTTCAAAATATTTTTGTTATCTTTTTTA
TAGCATCTTCTTGTATGGCATTGACAGGTCCTGCAGGTCAGAAAAAATGT
ATGTCTATTACTGGTTACAATGGATTGCAATGGGCTACTTGCTTAACATC
GACTTTTGTGGAACGAAAATCTTCAGGTATGGAAAGCTTTGCGTACCAAC
GTTGTTTCAACGTTCATCTAACGTTCACAACGTCCATATAACGTTAGATG
AACGTTGAAACAACGTTGTGTGCCAGCTAGGAAAGTTTTGCGTACCAAAC
AAAAAATCGATATCTATACATTCTTTCCGGTTTCTTTCTGTCTACCTTAA
TTTGGCACAGTTCCGTTCTATGTCGACCCTTGTTACGTACGCGACATAAA
AAACGCCGTCATTAAAAGGTGGATAAAATCGATGTCTTACGTTGTTAGCC
CAGTAATCTTGGACTTTTAGAAAGTCTTTCGATTATATTTTCACAGAGCC
CCTAACCAGCCCGCTCTGACACCTAAAATCTGAACTGAACATTTGAAGGA
GCGGAGATCGGCAACATCTTTTGATTGCTAGGACATCGCTACCAGTAAAA
TTATAACAATACAAAATTATAAAGAAATATATGATCTCATAAAATGTGGT
GAGTTTGTATTTTGGAAAAAAAAATCATTTTTCATGCCCTATGTTTTTTG
TTTTTGTTTTGAGGTATTCAAAAAAAAAATATTCTTTAAGTCGAGATCAC
ACCACTTAAAGTTGGCTTTGAGACATCGCCAAAAAGTTGACTTTGAGATA
TCGAGAAAAAATGACTTCGAGACTTCGCGAAAAAATGACTTTCAGATGTC
AAGAAATATTGATGCTGAAACATCCCGAAAAAGTTCATATAATGGAAAAA
TCGCTGGGTCTCCCTGAAAATAATAAAACGACATATGACACGTCATACTT
TTAACTATACAAAAACACAGTGTTAAAAGTTCTACCGTTTCAGCGAACTA
TAAAAAGAAGCTTCTCCGTCTCGAAATTCTGCTCGATTTACTTACATTTC
AAGAATATTTGGTAATTTTGCTGTGTAAGATCCAGTTTTGTTTCAGAAAA
AGAGCCTTGCTTTTGAGCACTGCTAGCCAAAACAACAGAACAGCTGGAAG
TACCCATTGTGTCACGGCAAATGCCTAAAAGTTGAAATTTTCCTATTTCT
CTGACCCTTAGTGGGACTGAAATTTGATTTTCATTTTTCCGACCTTTAGC
GGGACTTTGGAAATCCAAAAAAGGTACCCTTAAGGGTGGCACATACCATA
CCCTCCGTTTGCCTAAGTATCCCCCGCCCCCGGGCTAAATTCATTTCAAC
ATTCCTCGCAGGTCGGCACAAATGTAAATATTACTATTACAAATTTTGTT
GGTACCAATGTGAGATGGACGTCAACAACCGTGGAAGCGGCGCCATCTCA
ACACCGTGTCAATGCCAGACATTAAATGAAGTGATGATGCCAGATTTACC
AGGTACACGTTTTTTATATAATAATGGTGTTTTTTTTCATTTCATCATGA
ATATTCTTATTATTTTTTTGTGAAAATCATCCTGGAATATTCTTAGGGTA
TTTTCTTAGGTTAGGGTCACAATTCAACCAAAATTTAACAAGCAAAAAAT
GGCATTTTTATGAAAATTTTGAGCCTTACTGGGGGAAACTGGCAATTTAC
CGTTAAAATTGCTCTGTAAATTGCATTCTTAGATTTTGTTGCCTAATTCC
ATGATGGTGATATTCTAACGATATTCTCTTTTGGCAATTTTCATCATGGA
CATTCTTGTAAAGTGTATTCGTGACATGATAAGTAAATATTTGTGATTTT
TGTATTTTCGTAATATTTTTGCAACGATGTGGCAGGGATTTTAAAACAAG
AGACATTTTCAAAACATATTCCAACACCCCTGTCCCACAGCCCTGGTTGA
ATCTCTCCTGACTATAGGAAAGAGAATTTTAATTGAGACCCCAANCACAG
CCCTGGTCGAATCTCTCCTGACTATAGGAAAGAAAGTTTAGAGCCCAATG
GTGGATAGAAATTCTACTGTTCTCAGTTAAAAAATCTAGTGGGGATATTT
TAGGAGTAATTTTTACCATTAAATTTCAAATGGGTATGAAAACAAGGTCA
ATTTTCCAGTAGTGCTGAAATAGTAAGATTAATTTTCCCCCGGGTACGAA
ATTTTAGCCAAATGGTCTCTTTAGGCTTTCTTCCCACCGGGTCTATGATA
ATTAAACATTTCATTTTCACCTGCCCTTCCACATAGAGAAAGTGTCTACT
TCGCATCTATTGTTTTTTTTCGAAACAAAGTTAGAACGCATGCGTATATT
TTTATTTTATAAACTGTTAGTCGTTATTATACGCCAAACACAATAAGAGG
GGGTGATCAGTCACGTTCCTCTTATTGTGTTTGGCGTATAATAACGACTA
ACAGTTTATAAAATAAAAATATACGCGTGTGTTTTAAGTTTGTTTCGAAA
ATGATTTCCTTTTTGATTATCACTTTCGGTCGGGGTTGTGGATGGTGAAA
TTTGTCGTTCATTTCAGGTGATTGTTACAGCCCTTCTGGTGATAATTGCA
ATTGGTATACCACTTGTCTCCTACCATCAACACAATGTTCTACTGAGCGA
TTCAAATACACTGTCACTTTTCTACAAGAGTTGTGCAAGATGGCATCGAA
CACTACTTTTTCTTCTGCTGCAAGAAATTGGTTTAAAGAAGCTCAAGGAT
GTATCCAAATTGAATTGACCTTGCTTTTAAAAGTAT

Coding sequence (CDS) from alignment at sc0000417:11509..16494-

>TCONS_00022425 ID=TCONS_00022425|Name=TCONS_00022425|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0000417:11509..16494- (Clytia hemisphaerica)
GTGATTGTTACAGCCCTTCTGGTGATAATTGCAATTGGTATACCACTTGT
CTCCTACCATCAACACAATGTTCTACTGAGCGATTCAAATACACTGTCAC
TTTTCTACAAGAGTTGTGCAAGATGGCATCGAACACTACTTTTTCTTCTG
CTGCAAGAAATTGGTTTAAAGAAGCTCAAGGATGTATCCAAATTGAATTG
ACCTTGCTTTTAAAAGTAGTCGGCACAAATGTAAATATTACTATTACAAA
TTTTGTTGGTACCAATGTGAGATGGACGTCAACAACCGTGGAAGCGGCGC
CATCTCAACACCGTGTCAATGCCAGACATTAAATGAAGTGATGATGCCAG
ATTTACCAGCATCTTCTTGTATGGCATTGACAGGTCCTGCAGGTCAGAAA
AAATGTATGTCTATTACTGGTTACAATGGATTGCAATGGGCTACTTGCTT
AACATCGACTTTTGTGGAACGAAAATCTTCAGATGGAGCCTTTTAAATTT
GTTTTTGTTTTGTTTAACTGCGCCATTTTCAACTTCAAAACAGGTGATTG
TTACAGCCCTTCTGGTGATAATTGCAATTGGTATACCACTTGTCTCCTAC
CATCAACACAATGTTCTACTGAGCGATTCAAATACACTGTCACTTTTCTA
CAAGAGTTGTGCAAGATGGCATCGAACACTACTTTTTCTTCTGCTGCAAG
AAATTGGTTTAAAGAAGCTCAAGGATGTATCCAAATTGAATTGACCTTGC
TTTTAAAAGTAGTCGGCACAAATGTAAATATTACTATTACAAATTTTGTT
GGTACCAATGTGAGATGGACGTCAACAACCGTGGAAGCGGCGCCATCTCA
ACACCGTGTCAATGCCAGACATTAAATGAAGTGATGATGCCAGATTTACC
AGCATCTTCTTGTATGGCATTGACAGGTCCTGCAGGTCAGAAAAAATGTA
TGTCTATTACTGGTTACAATGGATTGCAATGGGCTACTTGCTTAACATCG
ACTTTTGTGGAACGAAAATCTTCAGATGGAGCCTTTTAAATTTGTTTTTG
TTTTGTTTAACTGCGCCATTTTCAACTTCAAAACAGGTGATTGTTACAGC
CCTTCTGGTGATAATTGCAATTGGTATACCACTTGTCTCCTACCATCAAC
ACAATGTTCTACTGAGCGATTCAAATACACTGTCACTTTTCTACAAGAGT
TGTGCAAGATGGCATCGAACACTACTTTTTCTTCTGCTGCAAGAAATTGG
TTTAAAGAAGCTCAAGGATGTATCCAAATTGAATTGACCTTGCTTTTAAA
AGTAGTCGGCACAAATGTAAATATTACTATTACAAATTTTGTTGGTACCA
ATGTGAGATGGACGTCAACAACCGTGGAAGCGGCGCCATCTCAACACCGT
GTCAATGCCAGACATTAAATGAAGTGATGATGCCAGATTTACCAGCATCT
TCTTGTATGGCATTGACAGGTCCTGCAGGTCAGAAAAAATGTATGTCTAT
TACTGGTTACAATGGATTGCAATGGGCTACTTGCTTAACATCGACTTTTG
TGGAACGAAAATCTTCAGATGGAGCCTTTTAAATTTGTTTTTGTTTTGTT
TAACTGCGCCATTTTCAACTTCAAAACAGGTGATTGTTACAGCCCTTCTG
GTGATAATTGCAATTGGTATACCACTTGTCTCCTACCATCAACACAATGT
TCTACTGAGCGATTCAAATACACTGTCACTTTTCTACAAGAGTTGTGCAA
GATGGCATCGAACACTACTTTTTCTTCTGCTGCAAGAAATTGGTTTAAAG
AAGCTCAAGGATGTATCCAAATTGAATTGACCTTGCTTTTAAAAGTAGTC
GGCACAAATGTAAATATTACTATTACAAATTTTGTTGGTACCAATGTGAG
ATGGACGTCAACAACCGTGGAAGCGGCGCCATCTCAACACCGTGTCAATG
CCAGACATTAAATGAAGTGATGATGCCAGATTTACCAGCATCTTCTTGTA
TGGCATTGACAGGTCCTGCAGGTCAGAAAAAATGTATGTCTATTACTGGT
TACAATGGATTGCAATGGGCTACTTGCTTAACATCGACTTTTGTGGAACG
AAAATCTTCAGATGGAGCCTTTTAAATTTGTTTTTGTTTTGTTTAACTGC
GCCATTTTCAACTTCAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012578XLOC_012578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022425-exon-sc0000417-1575043694:16471..16494TCONS_00022425-exon-sc0000417-1575043694:16471..16494Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1575043694:15891..16023TCONS_00022425-exon-sc0000417-1575043694:15891..16023Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1575043694:14119..14241TCONS_00022425-exon-sc0000417-1575043694:14119..14241Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1575043694:12793..12933TCONS_00022425-exon-sc0000417-1575043694:12793..12933Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1575043694:11509..11727TCONS_00022425-exon-sc0000417-1575043694:11509..11727Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1510915933:16471..16494TCONS_00022425-exon-sc0000417-1510915933:16471..16494Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1510915933:15891..16023TCONS_00022425-exon-sc0000417-1510915933:15891..16023Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1510915933:14119..14241TCONS_00022425-exon-sc0000417-1510915933:14119..14241Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1510915933:12793..12933TCONS_00022425-exon-sc0000417-1510915933:12793..12933Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1510915933:11509..11727TCONS_00022425-exon-sc0000417-1510915933:11509..11727Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1491911889:16471..16494TCONS_00022425-exon-sc0000417-1491911889:16471..16494Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1491911889:15891..16023TCONS_00022425-exon-sc0000417-1491911889:15891..16023Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1491911889:14119..14241TCONS_00022425-exon-sc0000417-1491911889:14119..14241Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1491911889:12793..12933TCONS_00022425-exon-sc0000417-1491911889:12793..12933Clytia hemisphaericaexon
TCONS_00022425-exon-sc0000417-1491911889:11509..11727TCONS_00022425-exon-sc0000417-1491911889:11509..11727Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022425-proteinTCONS_00022425-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000417supercontigsc0000417:11509..16494 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7344	17.2581	6.43088	4.37678	36.9651	30.0875	56.0893	53.7981	20.9483	27.3226	15.1781	13.1023	0.164235	0.51168	0.0467411	0	5.31424	7.41035	0.612518	0.0915652	2.94471	1.74688	7.36169	5.74899	3.09323	3.78601	5.41777	2.2887	1.37045	1.95478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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