TCONS_00022439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022439
Unique NameTCONS_00022439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022439 ID=TCONS_00022439|Name=TCONS_00022439|organism=Clytia hemisphaerica|type=transcript|length=640bp
tcgacccttacagtgcacagTGCACTTTGCAAAGCTTTGAAAAaggaccc
ttaagggccgcacggaCCGTAGGTGGTATACCTTAAGTAACTAAAGTACC
TATTTGAGGTTTACGTTTAGCGCTTGAAGAGGGATATTAAGGTGCTTGGA
TGTAGCCTAAAGGTCCTAAGGTTAGGGAATGATCTAAGACCCAACCGCAA
GACTAGAAATTCATTGTGACTGAAAGATTCAAACATGTTGAGAATAGACT
CCCTCAAATACACcctttcgaccgtagtcgcgcggttaGGTGCATgacac
ttaattatttaattatcccactaaactcgatccaatccttttttgacaca
tttttctattgtctataggtgcaaaaaaatgactgggacggttttagtgg
gataaagcggacaaaaaaatgcctgcgCCGCagttggtggctacggtcga
aaggGTGTATTCATTGTAACGAATATCAATGCAATCAGAGAGACTTTcgt
tatttcaaattatttttatatttattgtaatttcattgGGTTTTTATCGg
gtttgtatatatttttcattttgtaaatttttgtacataagaACTTGTAA
TATAGTTTTAGATTTCGAATACTTAACAattaaaataaag
Run BLAST on NCBI

transcript from alignment at sc0000417:20110..20749

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022439 ID=TCONS_00022439|Name=TCONS_00022439|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at sc0000417:20110..20749 (Clytia hemisphaerica)
ctttattttaatTGTTAAGTATTCGAAATCTAAAACTATATTACAAGTtc
ttatgtacaaaaatttacaaaatgaaaaatatatacaaaccCGATAAAAA
CCcaatgaaattacaataaatataaaaataatttgaaataacgAAAGTCT
CTCTGATTGCATTGATATTCGTTACAATGAATACACcctttcgaccgtag
ccaccaactGCGGcgcaggcatttttttgtccgctttatcccactaaaac
cgtcccagtcatttttttgcacctatagacaatagaaaaatgtgtcaaaa
aaggattggatcgagtttagtgggataattaaataattaagtgtcATGCA
CCtaaccgcgcgactacggtcgaaaggGTGTATTTGAGGGAGTCTATTCT
CAACATGTTTGAATCTTTCAGTCACAATGAATTTCTAGTCTTGCGGTTGG
GTCTTAGATCATTCCCTAACCTTAGGACCTTTAGGCTACATCCAAGCACC
TTAATATCCCTCTTCAAGCGCTAAACGTAAACCTCAAATAGGTACTTTAG
TTACTTAAGGTATACCACCTACGGtccgtgcggcccttaagggtcctTTT
TCAAAGCTTTGCAAAGTGCActgtgcactgtaagggtcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012586XLOC_012586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022439-exon-sc0000417-1491911889:20110..20749TCONS_00022439-exon-sc0000417-1491911889:20110..20749Clytia hemisphaericaexon
TCONS_00022439-exon-sc0000417-1510915933:20110..20749TCONS_00022439-exon-sc0000417-1510915933:20110..20749Clytia hemisphaericaexon
TCONS_00022439-exon-sc0000417-1575043694:20110..20749TCONS_00022439-exon-sc0000417-1575043694:20110..20749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000417supercontigsc0000417:20110..20749 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.481656	0.245451	0.545224	0.311599	1.95403	1.60885	0.771177	1.68049	1.24507	1.21967	1.38804	1.12597	1.1012	0.901295	0.408219	0.644588	0.756954	0.653616	1.12489	1.09852	0.547775	0.369518	0.381029	0.261696	0.636647	1.02171	1.01109	0.143978	0.290901	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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