TCONS_00022440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022440
Unique NameTCONS_00022440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022440 ID=TCONS_00022440|Name=TCONS_00022440|organism=Clytia hemisphaerica|type=transcript|length=898bp
aacgcgcgcaaaattatgagatgtttgcccaacttccttatgcgtgaagc
tatgaatgccatcctcggaagctttaggcttcctgcggtggcaataactt
cattttcagtttttttttgtttattctcaATACCAAAGGCAGTTTCGGAA
GCAGCTAATGTTTTGTTGGCAAAGTAATTTATTACCTCAGACTTCACATA
TTCGATCCAACCATTATCATCCCGTTTTACCAATGTGTGATTTTCGGGAA
AATATGTTCCGAATCGGACCGAAACTTGGCTAGCTATCTTCTCTCTGTTC
AGCATATCTGCATAAATTTGTTCTGTTTGTTGGTAATAATATTGcattcc
aataaagcataaaataaaaagtagtaTTAAACGAATCATGATGTTTCCAA
TATCCAACTAACAGAGAAGGTTTAATAAACACGATATCCGCCGTTTGAGT
CCGCCTAAACTTTTCCTGcgttttcgatttttgaatctttgttatttttc
gatttggttTCTTCTATCTGAAGGAGCAAGCCTTTGTTCATCACAAGTGA
TTAAATACAGAGCTTAACAAATTGTATTTAGAGCACTCTTGTGACAACAG
AAGTCTTTGTTCGTTGGCCGGATTCGCTGAGATCGACACTTTGTGTTTTA
AGCACTCTGTTGACAGCAGCAGTCTATGTTCCCGGGTAAGCGAGCCACAC
TTGGTGAGTCCTCGGAATGACGAAAAACGAAATCTGCGGATAGATGTAAA
GTTGGGCTCCTTTGAAACTTTTCgtgttttagaatttttcattgaatttc
gaatttcGTTACTCACTCgggtttgtttttctttggtAACTTCAGGTATA
CTTTTTATAAAGCTCTATATCCAAAAGAGAACTCTGGTGGCTTTTAGT
Run BLAST on NCBI

protein sequence of TCONS_00022440-protein

>TCONS_00022440-protein ID=TCONS_00022440-protein|Name=TCONS_00022440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MIRLILLFILCFIGMQYYYQQTEQIYADMLNREKIASQVSVRFGTYFPEN
HTLVKRDDNGWIEYVKSEVINYFANKTLAASETAFGIENKQKKTENEVIA
TAGSLKLPRMAFIASRIRKLGKHLIILRA
Run BLAST on NCBI

transcript from alignment at sc0000417:111870..112767

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022440 ID=TCONS_00022440|Name=TCONS_00022440|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at sc0000417:111870..112767 (Clytia hemisphaerica)
ACTAAAAGCCACCAGAGTTCTCTTTTGGATATAGAGCTTTATAAAAAGTA
TACCTGAAGTTaccaaagaaaaacaaacccGAGTGAGTAACgaaattcga
aattcaatgaaaaattctaaaacacGAAAAGTTTCAAAGGAGCCCAACTT
TACATCTATCCGCAGATTTCGTTTTTCGTCATTCCGAGGACTCACCAAGT
GTGGCTCGCTTACCCGGGAACATAGACTGCTGCTGTCAACAGAGTGCTTA
AAACACAAAGTGTCGATCTCAGCGAATCCGGCCAACGAACAAAGACTTCT
GTTGTCACAAGAGTGCTCTAAATACAATTTGTTAAGCTCTGTATTTAATC
ACTTGTGATGAACAAAGGCTTGCTCCTTCAGATAGAAGAaaccaaatcga
aaaataacaaagattcaaaaatcgaaaacgCAGGAAAAGTTTAGGCGGAC
TCAAACGGCGGATATCGTGTTTATTAAACCTTCTCTGTTAGTTGGATATT
GGAAACATCATGATTCGTTTAAtactactttttattttatgctttattgg
aatgCAATATTATTACCAACAAACAGAACAAATTTATGCAGATATGCTGA
ACAGAGAGAAGATAGCTAGCCAAGTTTCGGTCCGATTCGGAACATATTTT
CCCGAAAATCACACATTGGTAAAACGGGATGATAATGGTTGGATCGAATA
TGTGAAGTCTGAGGTAATAAATTACTTTGCCAACAAAACATTAGCTGCTT
CCGAAACTGCCTTTGGTATtgagaataaacaaaaaaaaactgaaaatgaa
gttattgccaccgcaggaagcctaaagcttccgaggatggcattcatagc
ttcacgcataaggaagttgggcaaacatctcataattttgcgcgcgtt

Coding sequence (CDS) from alignment at sc0000417:111870..112767

>TCONS_00022440 ID=TCONS_00022440|Name=TCONS_00022440|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000417:111870..112767 (Clytia hemisphaerica)
ATGATTCGTTTAAtactactttttattttatgctttattggaatgCAATA
TTATTACCAACAAACAGAACAAATTTATGCAGATATGCTGAACAGAGAGA
AGATAGCTAGCCAAGTTTCGGTCCGATTCGGAACATATTTTCCCGAAAAT
CACACATTGGTAAAACGGGATGATAATGGTTGGATCGAATATGTGAAGTC
TGAGGTAATAAATTACTTTGCCAACAAAACATTAGCTGCTTCCGAAACTG
CCTTTGGTATtgagaataaacaaaaaaaaactgaaaatgaagttattgcc
accgcaggaagcctaaagcttccgaggatggcattcatagcttcacgcat
aaggaagttgggcaaacatctcataattttgcgcgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012587XLOC_012587Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022440-proteinTCONS_00022440-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022440-exon-sc0000417-1491911889:111870..112767TCONS_00022440-exon-sc0000417-1491911889:111870..112767Clytia hemisphaericaexon
TCONS_00022440-exon-sc0000417-1510915933:111870..112767TCONS_00022440-exon-sc0000417-1510915933:111870..112767Clytia hemisphaericaexon
TCONS_00022440-exon-sc0000417-1575043694:111870..112767TCONS_00022440-exon-sc0000417-1575043694:111870..112767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000417supercontigsc0000417:111870..112767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0993064	0.196014	0.341386	0.222662	1.9324	1.14057	0.249688	0.483871	0	0.200594	0	0.227343	2.52862	1.02427	0.514844	0.456374	5.73234	6.8988	7.15053	6.84527	0.260948	0.275098	0.806647	2.10568	2.52634	1.91101	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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