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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022445 ID=TCONS_00022445|Name=TCONS_00022445|organism=Clytia hemisphaerica|type=transcript|length=1738bp
TTTGTATTGAGGGTGGTTGGTTAGCTGTATCGCTTTATGTTGGAGTAAAA
CTGTTTTACCTGTACCAAAAGGCCCAAGAATAATCAGTTTGTTAAAGCGC
GGATCGTTGCTATTCAGTACTGCCATTTGTTGATTAGAATAAAATAGAAT
ATTGTCACTAGTGGATACGTTTTCGATGGCATTGTGAACGTAATCCACCC
AATTGGAGCTGGTTATTGGTGCAACAAGGTCCTTTTTAGACACGTGAATC
GAAAAAACAATGATCTTCAAAAGTTTCTGAACTTGATCGAGTGGTGTTGG
CTTTTGTGCTGGAAGGATTGGGAATTTGTTGAAAATACTCATCAGCCATG
TTTTTATATCTGTTTCCATCGTTATAAAATGTCGGCTGTTCATTAGAATC
GGGCTCTTTCCGGCACAAATAACCGGAAAAAATGTCCAACCAGGTTCCAG
TTGATCTCCCAATCTTTCCTCGAATAATTGATGGTTTGAATCTAATTGCT
TAAAAACTCGATCGTTTTTAAGTTCGCTTTTCATCTCCACGGAAATTACG
AGTTTTCTTTTCCACGAGATAATCAANTTGATTCTAATTGCTTAAAAACT
CGATCGTTTTTAAGTTCGCTTTTCATCTCTACGGAAATGATGAGTTTTCT
TTTCCACGAGATAATCAAAAAGTCTGCTTCTTTGTGCATTTTGTTTCGAA
CatttgtcaaaaaattgacCGATGAGAGAACAACTGTGTCCTGGAGAATG
TCATTTTCCAACGGTAGGAGCTGGTCATAAAACCAATGCTCTAGTTGTTC
TCCCAATTCTGACAATTCTAATCCAAAAAGCCATTGAAGGTTCGAATCTT
GCGGTGGTTTCTCTTGAACTTTCTgttgaagaaactttttgaaattcttt
ttgctcAGAGATTCGCGTAGAAAAGTTTTGAATTCTGGTTCTGGTGATGT
CTGTGGAATTTCATTGATGCAAGCTTGAACAAAAGTTGCTAGTTCTGACG
TAGTTGATGGAAGATCAACTTGGTCAGTTTTGAGCTCTTCGATTGTCAAA
TACATAACTTTGAGATTCATCACCCACTTATCGAAaatgtttttgtcaat
ttgatCAGAGTCACTTTGTGCCTGCATCAATTCTTCTAATTCCATCGTTA
GCCAATTGTCTGGCGAATTTCCTTTCAAATTGCTCAAAAGTCTATCCACA
TCTTTCttgacaccataatcaagaATAGCTACTGATGACTTCTTTGTATA
TTGATTCGAAACAAACGTTGGAGGTATGAAGACAGCTTCGTGTAAATCCT
CAACGAAAAGTGAAGAATCACCATATTCTCTTTGAAGGAGAAACATGGCA
GCTTTAATGGGGTCGTTAAACTTGATAGTATTTCCCAAGTTGAATTGTTT
AGCTTGACGATTTGATACAGTTTGGTTGTTCCTGATGATTTGCCAGTACA
GCGATTCATTTTGATTACACTTTGTAGGATCAATTGGCTTTGGTTGCAAT
AACATGAGCTTTTGTGTCATACAGGGGATAGTCgccatatttttttatat
aaactgtaatgaaagaaaaatataatgaTAAAGAAATGGTAAAATTGTTG
GGATACcgcgggggggggcactggatTTATGAAACGACCGTATGTGCACC
AacctttacagtgcagagaaaatttaggcAAGTATGGGTAAATTTAGACC
AAAAGTCGACCCTAACATtgtattcttttgaaaaattg Run BLAST on NCBI protein sequence of TCONS_00022445-protein >TCONS_00022445-protein ID=TCONS_00022445-protein|Name=TCONS_00022445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MATIPCMTQKLMLLQPKPIDPTKCNQNESLYWQIIRNNQTVSNRQAKQFN
LGNTIKFNDPIKAAMFLLQREYGDSSLFVEDLHEAVFIPPTFVSNQYTKK
SSVAILDYGVKKDVDRLLSNLKGNSPDNWLTMELEELMQAQSDSDQIDKN
IFDKWVMNLKVMYLTIEELKTDQVDLPSTTSELATFVQACINEIPQTSPE
PEFKTFLRESLSKKNFKKFLQQKVQEKPPQDSNLQWLFGLELSELGEQLE
HWFYDQLLPLENDILQDTVVLSSVNFLTNVRNKMHKEADFLIISWKRKLI
ISVEMKSELKNDRVFKQLESX Run BLAST on NCBI transcript from alignment at sc0000417:275503..277240 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022445 ID=TCONS_00022445|Name=TCONS_00022445|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at sc0000417:275503..277240 (Clytia hemisphaerica)
caatttttcaaaagaatacaATGTTAGGGTCGACTTTTGGTCTAAATTTA
CCCATACTTgcctaaattttctctgcactgtaaaggtTGGTGCACATACG
GTCGTTTCATAAatccagtgcccccccccgcgGTATCCCAACAATTTTAC
CATTTCTTTAtcattatatttttctttcattacagtttatataaaaaaat
atggcGACTATCCCCTGTATGACACAAAAGCTCATGTTATTGCAACCAAA
GCCAATTGATCCTACAAAGTGTAATCAAAATGAATCGCTGTACTGGCAAA
TCATCAGGAACAACCAAACTGTATCAAATCGTCAAGCTAAACAATTCAAC
TTGGGAAATACTATCAAGTTTAACGACCCCATTAAAGCTGCCATGTTTCT
CCTTCAAAGAGAATATGGTGATTCTTCACTTTTCGTTGAGGATTTACACG
AAGCTGTCTTCATACCTCCAACGTTTGTTTCGAATCAATATACAAAGAAG
TCATCAGTAGCTATtcttgattatggtgtcaaGAAAGATGTGGATAGACT
TTTGAGCAATTTGAAAGGAAATTCGCCAGACAATTGGCTAACGATGGAAT
TAGAAGAATTGATGCAGGCACAAAGTGACTCTGatcaaattgacaaaaac
attTTCGATAAGTGGGTGATGAATCTCAAAGTTATGTATTTGACAATCGA
AGAGCTCAAAACTGACCAAGTTGATCTTCCATCAACTACGTCAGAACTAG
CAACTTTTGTTCAAGCTTGCATCAATGAAATTCCACAGACATCACCAGAA
CCAGAATTCAAAACTTTTCTACGCGAATCTCTgagcaaaaagaatttcaa
aaagtttcttcaacAGAAAGTTCAAGAGAAACCACCGCAAGATTCGAACC
TTCAATGGCTTTTTGGATTAGAATTGTCAGAATTGGGAGAACAACTAGAG
CATTGGTTTTATGACCAGCTCCTACCGTTGGAAAATGACATTCTCCAGGA
CACAGTTGTTCTCTCATCGgtcaattttttgacaaatGTTCGAAACAAAA
TGCACAAAGAAGCAGACTTTTTGATTATCTCGTGGAAAAGAAAACTCATC
ATTTCCGTAGAGATGAAAAGCGAACTTAAAAACGATCGAGTTTTTAAGCA
ATTAGAATCAANTTGATTATCTCGTGGAAAAGAAAACTCGTAATTTCCGT
GGAGATGAAAAGCGAACTTAAAAACGATCGAGTTTTTAAGCAATTAGATT
CAAACCATCAATTATTCGAGGAAAGATTGGGAGATCAACTGGAACCTGGT
TGGACATTTTTTCCGGTTATTTGTGCCGGAAAGAGCCCGATTCTAATGAA
CAGCCGACATTTTATAACGATGGAAACAGATATAAAAACATGGCTGATGA
GTATTTTCAACAAATTCCCAATCCTTCCAGCACAAAAGCCAACACCACTC
GATCAAGTTCAGAAACTTTTGAAGATCATTGTTTTTTCGATTCACGTGTC
TAAAAAGGACCTTGTTGCACCAATAACCAGCTCCAATTGGGTGGATTACG
TTCACAATGCCATCGAAAACGTATCCACTAGTGACAATATTCTATTTTAT
TCTAATCAACAAATGGCAGTACTGAATAGCAACGATCCGCGCTTTAACAA
ACTGATTATTCTTGGGCCTTTTGGTACAGGTAAAACAGTTTTACTCCAAC
ATAAAGCGATACAGCTAACCAACCACCCTCAATACAAA Coding sequence (CDS) from alignment at sc0000417:275503..277240 >TCONS_00022445 ID=TCONS_00022445|Name=TCONS_00022445|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000417:275503..277240 (Clytia hemisphaerica)
atggcGACTATCCCCTGTATGACACAAAAGCTCATGTTATTGCAACCAAA
GCCAATTGATCCTACAAAGTGTAATCAAAATGAATCGCTGTACTGGCAAA
TCATCAGGAACAACCAAACTGTATCAAATCGTCAAGCTAAACAATTCAAC
TTGGGAAATACTATCAAGTTTAACGACCCCATTAAAGCTGCCATGTTTCT
CCTTCAAAGAGAATATGGTGATTCTTCACTTTTCGTTGAGGATTTACACG
AAGCTGTCTTCATACCTCCAACGTTTGTTTCGAATCAATATACAAAGAAG
TCATCAGTAGCTATtcttgattatggtgtcaaGAAAGATGTGGATAGACT
TTTGAGCAATTTGAAAGGAAATTCGCCAGACAATTGGCTAACGATGGAAT
TAGAAGAATTGATGCAGGCACAAAGTGACTCTGatcaaattgacaaaaac
attTTCGATAAGTGGGTGATGAATCTCAAAGTTATGTATTTGACAATCGA
AGAGCTCAAAACTGACCAAGTTGATCTTCCATCAACTACGTCAGAACTAG
CAACTTTTGTTCAAGCTTGCATCAATGAAATTCCACAGACATCACCAGAA
CCAGAATTCAAAACTTTTCTACGCGAATCTCTgagcaaaaagaatttcaa
aaagtttcttcaacAGAAAGTTCAAGAGAAACCACCGCAAGATTCGAACC
TTCAATGGCTTTTTGGATTAGAATTGTCAGAATTGGGAGAACAACTAGAG
CATTGGTTTTATGACCAGCTCCTACCGTTGGAAAATGACATTCTCCAGGA
CACAGTTGTTCTCTCATCGgtcaattttttgacaaatGTTCGAAACAAAA
TGCACAAAGAAGCAGACTTTTTGATTATCTCGTGGAAAAGAAAACTCATC
ATTTCCGTAGAGATGAAAAGCGAACTTAAAAACGATCGAGTTTTTAAGCA
ATTAGAATCAANTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022445-exon-sc0000417-1491911889:275503..277240 | TCONS_00022445-exon-sc0000417-1491911889:275503..277240 | Clytia hemisphaerica | exon |
| TCONS_00022445-exon-sc0000417-1510915933:275503..277240 | TCONS_00022445-exon-sc0000417-1510915933:275503..277240 | Clytia hemisphaerica | exon |
| TCONS_00022445-exon-sc0000417-1575043694:275503..277240 | TCONS_00022445-exon-sc0000417-1575043694:275503..277240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000417 | supercontig | sc0000417:275503..277240 . |
Blast
The following BLAST results are available for this feature:
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