TCONS_00022447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022447
Unique NameTCONS_00022447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022447 ID=TCONS_00022447|Name=TCONS_00022447|organism=Clytia hemisphaerica|type=transcript|length=792bp
TTCAGTAGATaacaacaagaaaaaaaagaaaaaaaagaacaaaaaattga
aaaaagttttgattgaTGAAAATGGATATATCAATGACAGAGGAGGAAAG
CATCGACATTCTGAATAAGTTATGCCCATGTCGTGAAAACgttattcaaa
aacttttatgttATATGACCAATGAAGATACACCTGCTACAACAAATTCC
TTATTCCTTTACGGAAATACAGGCTCTGGGAAGAGTCACGTGGTCAAAAC
AATGGTGGATCGTTTACAGATATGTCACTCCTACATCAATTGTATTGAAC
ACTTTACCTGTCGTCATTTATAccataaaattctcaaagatGCAGGTTAT
CCGCTCAGTAAAACATGTCAAAGCATGATGGAGTTTTGTCGTCTGTTAAA
ACTGTCagatttgaattcaaacaaGACGTTTTACATTATATTGGATAAAG
CCGAACGATTACGAACCAATATGGAGTCACATTTGCTTCCAGCTTTTATG
CGGTTAGGAGAATTGACTGGActtaatatttgtgtaatattCATCACTGA
TATTGttcttgagaaattctttcTCTCAAATGGTTTTATTTTACCAATCA
CGATACATTTTCCAGACTACACCAAAAGtgagattgttaatataatggCA
TTGGATGCACCAAAGAGTTATGGAGAAGAGATTTATAAACGATATTGTCA
GACTGTTGTGGATGTATTTTATTTAGCTTGTAGGGAAACAAACGAGTTGA
GACACTTGGTAAGATACACtctctttttttgtaagaataacG
Run BLAST on NCBI

protein sequence of TCONS_00022447-protein

>TCONS_00022447-protein ID=TCONS_00022447-protein|Name=TCONS_00022447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MKMDISMTEEESIDILNKLCPCRENVIQKLLCYMTNEDTPATTNSLFLYG
NTGSGKSHVVKTMVDRLQICHSYINCIEHFTCRHLYHKILKDAGYPLSKT
CQSMMEFCRLLKLSDLNSNKTFYIILDKAERLRTNMESHLLPAFMRLGEL
TGLNICVIFITDIVLEKFFLSNGFILPITIHFPDYTKSEIVNIMALDAPK
SYGEEIYKRYCQTVVDVFYLACRETNELRHLVRYTLFFCKNN
Run BLAST on NCBI

transcript from alignment at sc0000421:46166..47942+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022447 ID=TCONS_00022447|Name=TCONS_00022447|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at sc0000421:46166..47942+ (Clytia hemisphaerica)
TTCAGTAGATaacaacaagaaaaaaaagaaaaaaaagaacaaaaaattga
aaaaagttttgattgaTGAAAATGGATATATCAATGACAGAGGAGGAAAG
CATCGACATTCTGAATAAGTTATGCCCATGTCGTGAAAACgttattcaaa
aacttttatgttATATGACCAATGAAGATACACCTGCTACAACAAATTCC
TTATTCCTTTACGGAAATACAGGCTCTGGGAAGAGTCACGTGGTCAAAAC
AATGGTGGATCGTTTACAGGTATGTATAAGTTGATATTATAACAAAGAGA
CACAATATCTATGcttcaaactcagagtttcatggtgctCAGGCACCAAT
CATCAGTGAATACCATGAATTCTGAGTTTGAAACATAGATATTGTATCTA
CTAATTTATCGAGCACTCTCTACACAACAAGTTGATATTAGTGAGATTCA
GTACCAACAATTATTCATGAATGAAAGAAAATTTCCTCAGCTTAACCATG
GAACTAATCTTAACTGTAAGCCACATACTGTTCTCAAGTTATGAATAGAT
ATGTGACTTACactaaaaatgtcacaaaaaagGGGTGTCTATTTTTCATT
ACAATCAATTATTCGTGAACGTGAACGGAAAATATATCTTTCGAAGAAAC
CTGATTGACTGAAATTCACTAGCTTATTACATTTCCCGATTATACTTATT
GATATTTGAGTCTCTCTGATTTGATCCTCTTAGGACCAAGGGTTCTTTTC
GAATTACCAAAAGATTTGGATAAAGCATTAAAGGAAAGTATTTTAGACGA
ATTTCCACCTGTTGAGGGGaccaatgttttttttcgaattacactattcg
aataatagaagttcgaataacagagaatTGACTGACTTCACGATAGCAAG
TACCTGTAGGAAGGGCTTCTGTAACCTACAATAACCATATGTTGTAATGG
CAAACCAAGGCAGACATTAGCATTTTttacgtattacaatagaattccct
cgaggagttCCTAAGAGGTTTCTGTTGTAATACCCTCGAAaaaatcccac
aatgcatcgcttttttagaaaaataaaaaactcaagAGATATTTATTGTT
CGGGTTGCAACAACAAAATCCAATccaagaattttattttattattttat
attataaaagtttagattttctatattttagaattttttatgtcctaaaa
tttaaatacaaaagctttatttttgaaagccTGTTGTTTTTCTATTCCAT
TTAGATATGTCACTCCTACATCAATTGTATTGAACACTTTACCTGTCGTC
ATTTATAccataaaattctcaaagatGCAGGTTATCCGCTCAGTAAAACA
TGTCAAAGCATGATGGAGTTTTGTCGTCTGTTAAAACTGTCagatttgaa
ttcaaacaaGACGTTTTACATTATATTGGATAAAGCCGAACGATTACGAA
CCAATATGGAGTCACATTTGCTTCCAGCTTTTATGCGGTTAGGAGAATTG
ACTGGActtaatatttgtgtaatattCATCACTGATATTGttcttgagaa
attctttcTCTCAAATGGTTTTATTTTACCAATCACGATACATTTTCCAG
ACTACACCAAAAGtgagattgttaatataatggCATTGGATGCACCAAAG
AGTTATGGAGAAGAGATTTATAAACGATATTGTCAGACTGTTGTGGATGT
ATTTTATTTAGCTTGTAGGGAAACAAACGAGTTGAGACACTTGGTAAGAT
ACACtctctttttttgtaagaataacG

Coding sequence (CDS) from alignment at sc0000421:46166..47942+

>TCONS_00022447 ID=TCONS_00022447|Name=TCONS_00022447|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000421:46166..47942+ (Clytia hemisphaerica)
aTGAAAATGGATATATCAATGACAGAGGAGGAAAGCATCGACATTCTGAA
TAAGTTATGCCCATGTCGTGAAAACgttattcaaaaacttttatgttATA
TGACCAATGAAGATACACCTGCTACAACAAATTCCTTATTCCTTTACGGA
AATACAGGCTCTGGGAAGAGTCACGTGGTCAAAACAATGGTGGATCGTTT
ACAGATATGTCACTCCTACATCAATTGTATTGAACACTTTACCTGTCGTC
ATTTATAccataaaattctcaaagatGCAGGTTATCCGCTCAGTAAAACA
TGTCAAAGCATGATGGAGTTTTGTCGTCTGTTAAAACTGTCagatttgaa
ttcaaacaaGACGTTTTACATTATATTGGATAAAGCCGAACGATTACGAA
CCAATATGGAGTCACATTTGCTTCCAGCTTTTATGCGGTTAGGAGAATTG
ACTGGActtaatatttgtgtaatattCATCACTGATATTGttcttgagaa
attctttcTCTCAAATGGTTTTATTTTACCAATCACGATACATTTTCCAG
ACTACACCAAAAGtgagattgttaatataatggCATTGGATGCACCAAAG
AGTTATGGAGAAGAGATTTATAAACGATATTGTCAGACTGTTGTGGATGT
ATTTTATTTAGCTTGTAGGGAAACAAACGAGTTGAGACACTTGGTAAGAT
ACACtctctttttttgtaagaataacaTGAAAATGGATATATCAATGACA
GAGGAGGAAAGCATCGACATTCTGAATAAGTTATGCCCATGTCGTGAAAA
CgttattcaaaaacttttatgttATATGACCAATGAAGATACACCTGCTA
CAACAAATTCCTTATTCCTTTACGGAAATACAGGCTCTGGGAAGAGTCAC
GTGGTCAAAACAATGGTGGATCGTTTACAGATATGTCACTCCTACATCAA
TTGTATTGAACACTTTACCTGTCGTCATTTATAccataaaattctcaaag
atGCAGGTTATCCGCTCAGTAAAACATGTCAAAGCATGATGGAGTTTTGT
CGTCTGTTAAAACTGTCagatttgaattcaaacaaGACGTTTTACATTAT
ATTGGATAAAGCCGAACGATTACGAACCAATATGGAGTCACATTTGCTTC
CAGCTTTTATGCGGTTAGGAGAATTGACTGGActtaatatttgtgtaata
ttCATCACTGATATTGttcttgagaaattctttcTCTCAAATGGTTTTAT
TTTACCAATCACGATACATTTTCCAGACTACACCAAAAGtgagattgtta
atataatggCATTGGATGCACCAAAGAGTTATGGAGAAGAGATTTATAAA
CGATATTGTCAGACTGTTGTGGATGTATTTTATTTAGCTTGTAGGGAAAC
AAACGAGTTGAGACACTTGGTAAGATACACtctctttttttgtaagaata
ac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012594XLOC_012594Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022447-proteinTCONS_00022447-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022447-exon-sc0000421-1491911889:46166..46434TCONS_00022447-exon-sc0000421-1491911889:46166..46434Clytia hemisphaericaexon
TCONS_00022447-exon-sc0000421-1510915933:46166..46434TCONS_00022447-exon-sc0000421-1510915933:46166..46434Clytia hemisphaericaexon
TCONS_00022447-exon-sc0000421-1575043694:46166..46434TCONS_00022447-exon-sc0000421-1575043694:46166..46434Clytia hemisphaericaexon
TCONS_00022447-exon-sc0000421-1491911889:47420..47942TCONS_00022447-exon-sc0000421-1491911889:47420..47942Clytia hemisphaericaexon
TCONS_00022447-exon-sc0000421-1510915933:47420..47942TCONS_00022447-exon-sc0000421-1510915933:47420..47942Clytia hemisphaericaexon
TCONS_00022447-exon-sc0000421-1575043694:47420..47942TCONS_00022447-exon-sc0000421-1575043694:47420..47942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:46166..47942 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
96.6966	93.4637	41.341	32.5588	14.9358	12.1267	18.9334	17.7252	12.5637	12.5767	16.523	9.56467	11.0488	9.20468	9.60623	11.0506	11.4207	14.2811	9.83271	9.54461	15.1799	13.2587	55.1212	38.7584	12.4138	16.0938	11.0979	7.74754	34.4469	42.3216
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020796ORC5
IPR003593AAA+_ATPase
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000808origin recognition complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
cellular_component GO:0000808 origin recognition complex
Blast
[Close]
BLAST of TCONS_00022447 vs. Swiss-Prot (Human)
Match: ORC5 (Origin recognition complex subunit 5 OS=Homo sapiens GN=ORC5 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.559e-42
Identity = 85/228 (37.28%), Postives = 131/228 (57.46%), Query Frame = 3 
Query:  111 LNKLCPCRENVIQKLLCYMTNEDTPATTNSLFLYGNTGSGKSHVVKTMVDRLQICHSYINCIEHFTCRHLYHKIL--------KDAGYPLSKTCQSMMEFCRLLKLSDLNSN---KTFYIILDKAERLRTNMESHLLPAFMRLGELTGLNICVIFITDIVLEKFFLSNGFILPITIHFPDYTKSEIVNIMALDAPKSYGEEIYKRYCQTVVDVFYLACRETNELRHLV 761
            L  +  CRE+ +  +L  +  E    +  S+F+YG+T SGK++V +T++  L++ H ++NC+E FT R L  +IL         + G     TC++  +F RL K      N   +T YI+LDKAE LR +ME++LLP F+RL EL   N+ V+F+++IV EKF  + G   P  ++FPDY+   +  I++ D P  Y  + Y  Y   ++ VFY  CR+  ELRHL 
Sbjct:    4 LENVVLCRESQVS-ILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVFVNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTVYIVLDKAEYLR-DMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFPDYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLA 229
The following BLAST results are available for this feature:
BLAST of TCONS_00022447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ORC53.559e-4237.28Origin recognition complex subunit 5 OS=Homo sapie... [more]
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