TCONS_00022448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022448
Unique NameTCONS_00022448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022448 ID=TCONS_00022448|Name=TCONS_00022448|organism=Clytia hemisphaerica|type=transcript|length=1171bp
GGAAATTGCTGACAGAATACCTGCCAACCGACTAAAAATACCCTTCCAAG
CCTTTGTACTGACTAATATTAGTGTCAAATTTACTCTACTTTTAAAGATG
TTGTTTTATTTGACAATAGAAAGGTGGTGCACCTTGCATGCTGTGAtata
atatttacaataaatttatcaaatttgtgCCCATACGTACGGCAGGGGCG
TTCGGgatttgttctttcttttgtttagaaatacTAAGTAAGAAAATGGT
GGGAATTACGTTGAACGGCGACCCTGAGTTCTGAAAGTAAAATATCTGAT
ACCTTCAAAATTTCACTGCCCGACAGGTCCGACAGGGGTGCAATATAGTA
AAGAAGACAAAGAATGAATTGAGGGATGAAAAGACTGAATGAAAGATAAA
TGGAAGTATTTAAGATCTTATGACATATTCGTTTCTCAATTTCTAGTAAC
ACCTGCAGACGAGACtaaaatcaagaatcaagtTGAACTACCGTACTATT
CAAAATATATGTTACTGGCTGCATACTTTGCATCTTACAATCCTGCAAAC
ACCGATCGTAGGTTTTTCACCAAGAAAACTGCTGGCAGAATGTCAAAAAG
AGCAAAAGCTTCGGCTAAAGCTGCTAAGAACTTAGACAAGAAGTTTCTAG
GACCCAAGCCATTTCAACTGGACCGTCTAATGGCCATCTTTTACAGTATC
GTTGAAGGTGGAGCCAGTTCCTCCGCCAACATTTTATCCCAACTTTCCAG
CCTGGTAACATTGCAACTATTGGCAAAGACTTCCAATGATGACCAAGTGG
ACACGCCTAAATATAAATGCTTGGTATCCTTCGATTTTGCATTGTCCATT
GCTAAGCAACTAGACCTCGATATGGGAGAATATTTATATGAGTATACTTG
AagaagattttaaatattttttcccttaaGAAGGAGCGGGGGGGGGGTAA
GTTTAAACTCGCACTCAAACTCGCGTGAGTATTAGGAATCAGCTTTTTGA
GGATTACGTTTTTGAAAGCAAAACTAATAGAAATATTCTCCAGTCTCAAA
TCTTATATTAAAGTTTCTCGATGATTTAttctgtttttttaattcattta
ttTTGACAAGGAGCTCCTGTAATAGAATTTACCAAAAATAATTATatcat
tcaaaatatatttattcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00022448-protein

>TCONS_00022448-protein ID=TCONS_00022448-protein|Name=TCONS_00022448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MKDKWKYLRSYDIFVSQFLVTPADETKIKNQVELPYYSKYMLLAAYFASY
NPANTDRRFFTKKTAGRMSKRAKASAKAAKNLDKKFLGPKPFQLDRLMAI
FYSIVEGGASSSANILSQLSSLVTLQLLAKTSNDDQVDTPKYKCLVSFDF
ALSIAKQLDLDMGEYLYEYT
Run BLAST on NCBI

transcript from alignment at sc0000421:48707..51007+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022448 ID=TCONS_00022448|Name=TCONS_00022448|organism=Clytia hemisphaerica|type=transcript|length=2301bp|location=Sequence derived from alignment at sc0000421:48707..51007+ (Clytia hemisphaerica)
GGAAATTGCTGACAGAATACCTGCCAACCGACTAAAAATACCCTTCCAAG
CCTTTGTACTGACTAATATTAGTGTCAAATTTACTCTACTTTTAAAGATG
TTGTTTTATTTGACAATAGAAAGGTGGTGCACCTTGCATGCTGTGAtata
atatttacaataaatttatcaaatttgtgCCCATACGTACGGCAGGGGCG
TTCGGgatttgttctttcttttgtttagaaatacTAAGTAAGAAAATGGT
GGGAATTACGTTGAACGGCGACCCTGAGTTCTGAAAGTAAAATATCTGAT
ACCTTCAAAATTTCACTGCCCGACAGGTCCGACAGGGGTGCAATATAGTA
AAGAAGACAAAGAATGAATTGAGGGATGAAAAGACTGAATGAAAGATAAA
TGGAAGTATTTAAGATCTTATGACATATTCGTTTCTCAATTTCTAGTAAC
ACCTGCAGACGAGACtaaaatcaagaatcaagtTGAACTACCGTACTATT
CAAAATATATGTTACTGGCTGCATACTTTGCATCTTACAATCCTGCAAAC
ACCGATCGTAGGTTTTTCACCAAGAAAACTGCTGGCAGAATGTCAAAAAG
AGCAAAAGCTTCGGCTAAAGCTGCTAAGAACTTAGACAAGAAGTTTCTAG
GTAATAGTCTTATCTTTTTTGgccctacctcggaggtccttttaACCTGT
GGCCTCCCGTCCGATCGTCTGATGCAAGCTTTTCTCAGAATTGGCTCATT
TGattcttctgattttttgcacaatgatgctaaatgataatgcccaaaat
gtgacgaagcccgattttcgaaaaaatatttttcctgcTGAAAACGCCGG
AAATAGGCCGGAAAAGCCGTtgtttggcattttctcgagatttcatcatt
agttttttctgatattttgcacaaagatgcgcaTTAGCAATGTCCACCGA
GTCGGAATTTGGAGAACATTTTTTTCCCGGCCGGAAATtgtcggaaatat
gccggtaatcgccgtttttgcagattttcattggactttttcctaatatt
tctttgttttttcacacaaaagcATTTGTGTAGAAATGTAAGATAATGAT
CAACAATACTTTTCAACAAAGTCTGAATATGGAACTCTAAAAGTATTGTC
AAAAACATTAATAAACACTCTGAGTTTGTGTGCTAAACTTTCTTAATTAT
CATAAATAATGTTCGCCGTatgaaacaaaactttttgtttGTAAAATTAT
TATGTAACAAACTAATTGAAACAATGGATCATTGCAACTCAAAATATCAT
ACATTTATtttataaatctttgtttgGATTTTGCCTTGCCTGAAAACTAA
TTCTCAAGAACCTGCAAGAACTGCTAAAATAAACTATTtctcgtattttt
gatgacatatatattttttcagtCCCTATACGTTTCTTATTTTACTTCCT
TTTCTATTTCCATTCTATATTTATCATTAAGTAGGTCCATGGTCCATTTA
TGATATAGTATTGTATCCCAGGCTGTAAAGCACTTCACATTAACGTCGGT
GAATCATAGTGCCTTCAGTGAGCGTCAATAGTTGGGANTTTATGATATAG
TATTGTATCCCAGGCTGTAAAGCACTTCACATTAACGTCGGTGAATCATA
GTGCCTTCAGTGAGCGTCAATAGTTGGGAACAAAGTTCATATTAAGCTGG
CAGTTAGGTGATTCAAAAGCCATTTTTAGAATGATCATCCATGTTTCATA
GTTCTAAACctatatcaattttatttccAGGACCCAAGCCATTTCAACTG
GACCGTCTAATGGCCATCTTTTACAGTATCGTTGAAGGTGGAGCCAGTTC
CTCCGCCAACATTTTATCCCAACTTTCCAGCCTGGTAACATTGCAACTAT
TGGCAAAGACTTCCAATGATGACCAAGTGGACACGCCTAAATATAAATGC
TTGGTATCCTTCGATTTTGCATTGTCCATTGCTAAGCAACTAGACCTCGA
TATGGGAGAATATTTATATGAGTATACTTGAagaagattttaaatatttt
ttcccttaaGAAGGAGCGGGGGGGGGGTAAGTTTAAACTCGCACTCAAAC
TCGCGTGAGTATTAGGAATCAGCTTTTTGAGGATTACGTTTTTGAAAGCA
AAACTAATAGAAATATTCTCCAGTCTCAAATCTTATATTAAAGTTTCTCG
ATGATTTAttctgtttttttaattcatttattTTGACAAGGAGCTCCTGT
AATAGAATTTACCAAAAATAATTATatcattcaaaatatatttattcaaa
a

Coding sequence (CDS) from alignment at sc0000421:48707..51007+

>TCONS_00022448 ID=TCONS_00022448|Name=TCONS_00022448|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000421:48707..51007+ (Clytia hemisphaerica)
ATGAAAGATAAATGGAAGTATTTAAGATCTTATGACATATTCGTTTCTCA
ATTTCTAGTAACACCTGCAGACGAGACtaaaatcaagaatcaagtTGAAC
TACCGTACTATTCAAAATATATGTTACTGGCTGCATACTTTGCATCTTAC
AATCCTGCAAACACCGATCGTAGGTTTTTCACCAAGAAAACTGCTGGCAG
AATGTCAAAAAGAGCAAAAGCTTCGGCTAAAGCTGCTAAGAACTTAGACA
AGAAGTTTCTAGGACCCAAGCCATTTCAACTGGACCGTCTAATGGCCATC
TTTTACAGTATCGTTGAAGGTGGAGCCAGTTCCTCCGCCAACATTTTATC
CCAACTTTCCAGCCTGGTAACATTGCAACTATTGGCAAAGACTTCCAATG
ATGACCAAGTGGACACGCCTAAATATAAATGCTTGGTATCCTTCGATTTT
GCATTGTCCATTGCTAAGCAACTAGACCTCGATATGGGAGAATATTTATA
TGAGTATACTTGAATGAAAGATAAATGGAAGTATTTAAGATCTTATGACA
TATTCGTTTCTCAATTTCTAGTAACACCTGCAGACGAGACtaaaatcaag
aatcaagtTGAACTACCGTACTATTCAAAATATATGTTACTGGCTGCATA
CTTTGCATCTTACAATCCTGCAAACACCGATCGTAGGTTTTTCACCAAGA
AAACTGCTGGCAGAATGTCAAAAAGAGCAAAAGCTTCGGCTAAAGCTGCT
AAGAACTTAGACAAGAAGTTTCTAGGACCCAAGCCATTTCAACTGGACCG
TCTAATGGCCATCTTTTACAGTATCGTTGAAGGTGGAGCCAGTTCCTCCG
CCAACATTTTATCCCAACTTTCCAGCCTGGTAACATTGCAACTATTGGCA
AAGACTTCCAATGATGACCAAGTGGACACGCCTAAATATAAATGCTTGGT
ATCCTTCGATTTTGCATTGTCCATTGCTAAGCAACTAGACCTCGATATGG
GAGAATATTTATATGAGTATACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012595XLOC_012595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022448-proteinTCONS_00022448-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022448-exon-sc0000421-1491911889:48707..49356TCONS_00022448-exon-sc0000421-1491911889:48707..49356Clytia hemisphaericaexon
TCONS_00022448-exon-sc0000421-1510915933:48707..49356TCONS_00022448-exon-sc0000421-1510915933:48707..49356Clytia hemisphaericaexon
TCONS_00022448-exon-sc0000421-1575043694:48707..49356TCONS_00022448-exon-sc0000421-1575043694:48707..49356Clytia hemisphaericaexon
TCONS_00022448-exon-sc0000421-1491911889:50487..51007TCONS_00022448-exon-sc0000421-1491911889:50487..51007Clytia hemisphaericaexon
TCONS_00022448-exon-sc0000421-1510915933:50487..51007TCONS_00022448-exon-sc0000421-1510915933:50487..51007Clytia hemisphaericaexon
TCONS_00022448-exon-sc0000421-1575043694:50487..51007TCONS_00022448-exon-sc0000421-1575043694:50487..51007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:48707..51007 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.7387	41.753	16.8279	14.7068	8.40498	7.27053	9.43538	8.92206	7.14779	7.31392	7.65952	6.16489	6.84308	4.96698	5.42377	5.86548	8.36088	7.20757	5.21405	5.12794	6.27561	5.322	24.9904	17.5301	8.67142	10.1067	4.90516	5.50476	16.1685	17.6409
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020796ORC5
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000808origin recognition complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
cellular_component GO:0000808 origin recognition complex
Blast
[Close]
BLAST of TCONS_00022448 vs. Swiss-Prot (Human)
Match: ORC5 (Origin recognition complex subunit 5 OS=Homo sapiens GN=ORC5 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.620e-28
Identity = 74/139 (53.24%), Postives = 97/139 (69.78%), Query Frame = 2 
Query:  479 QVELPYYSKYMLLAAYFASYNPANTDRRFFTKKTAGRMSXXXXXXXXXXXXXXXXFLGPKPFQLDRLMAIFYSIVEGGAXXXXXXXXXXXXXXXXXXXAKTSNDDQVDTPKYKCLVSFDFALSIAKQLDLDMGEYLYEY 895
             VELPYYSK++L+AAY ASYNPA TD+RFF K   G++        K  +      LGPKPF LDRL+AI YSIV+   + +ANI SQ++SLVTLQLL    +DDQ+D PKYKC VS DF  +IA+ ++ D+ +YLY++
Sbjct:  299 HVELPYYSKFILIAAYLASYNPARTDKRFFLKH-HGKIK--KTNFLKKHEKTSNHLLGPKPFPLDRLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAIARTVNFDIIKYLYDF 434
The following BLAST results are available for this feature:
BLAST of TCONS_00022448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ORC53.620e-2853.24Origin recognition complex subunit 5 OS=Homo sapie... [more]
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