TCONS_00022481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022481
Unique NameTCONS_00022481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022481 ID=TCONS_00022481|Name=TCONS_00022481|organism=Clytia hemisphaerica|type=transcript|length=1272bp
TTGGTATTACGAAGGAAATTAGATTATGAGAAGACACAACGAATTGAGTT
AACACTCACAAATAAAACAAACCCAGAATCCCTCATCTATAATTACATTA
TAGTGCTTGACATAACTGATGTGAACGATAATGCACCGAGCCTCAAAGTT
TCTCCAGTTTTCCCAAGAATCACAACAAATTTCCCTAAAGGATCTTTAGT
ATCACATGTCGGTGTGCAAGACTTGGATTCTGTGTCCCAGACATTCACCT
TCTCCATTAATAACGGTGATCCAAAGAAATTATTCACTATTGATGACCAA
GGTAGCATCTACACAACTCAATGCCTAGGGACTGACGCGGTTGGACAGTA
CAGACTTGGTATTAGAGTCAAAGATGGTGTTTTTATAGCCAATAAAACAC
TCATGGTTCAAGTCCACAAAGCTTCAGATAAGGATTTTGACAACAATTGT
GGATTGGAATGTAATCCAATCACCTTTAGTGTGACCAGTACTGCTAATGG
TGACGTCACTTTCACCAATGTCgaacaaaatggtcaaattctCAACCAAA
CACAGCTCCAGACAATTGTTGGTGATCCTCAAAGTACTGAATATTCAGAT
TTATCCAATGGTATACAAACGTCATTGGTCGAGTTTTTTGAACGTAAATA
TTCGTTGATTCGATTAAACGTTACCAATATGACCATTGTTGACCAACTTC
AGAAGCGGCAGAGAAGATCTGCAGATCCTGAAGCTTTTTTGAGTGCTCAA
TACATTTTTGAGGTCAAAACTACAGATGCAACTTTGCAAGAATTGAACCC
AATCAGTCAAAATGAAACCATCGAATTTACAAAGTCTTCCAAATACAGAT
TGCATACAAACGATCAGTTGAGTGTGGTTTCCGatgTTGACGAGTGTCAA
ACGAACTTGGATCAGTGTGACGTCAATGCATATTGTATGATTTACCCAAA
CGTTATTTCGTACACCTGTCAATGCAAAGATCAATACGAAGGGGATGGGT
TCGAATGTAACAAAATTGTTGATAAAGTTGATAAGAACTTGATGGTTGCG
ATCGGTGTATCAATCGGTGGAGGAGTGCTTCTCATTATTGTCGTCGTCCT
CGTGGTCGTCTACTGTAAAAGCAAATCAAGATATTTCAGGGATCTGAAAC
GACTCAACGCTAATACACAAGCAGGGTAAGACAGATTTCTTGTTCTTTGT
CAACCAACGCCCACCTCTCCAGGGGGAATTTTGGAAAGCTGGGTGATAGA
TATGTATTGATCGGTAAGGGCA
Run BLAST on NCBI

protein sequence of TCONS_00022481-protein

>TCONS_00022481-protein ID=TCONS_00022481-protein|Name=TCONS_00022481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
LVLRRKLDYEKTQRIELTLTNKTNPESLIYNYIIVLDITDVNDNAPSLKV
SPVFPRITTNFPKGSLVSHVGVQDLDSVSQTFTFSINNGDPKKLFTIDDQ
GSIYTTQCLGTDAVGQYRLGIRVKDGVFIANKTLMVQVHKASDKDFDNNC
GLECNPITFSVTSTANGDVTFTNVEQNGQILNQTQLQTIVGDPQSTEYSD
LSNGIQTSLVEFFERKYSLIRLNVTNMTIVDQLQKRQRRSADPEAFLSAQ
YIFEVKTTDATLQELNPISQNETIEFTKSSKYRLHTNDQLSVVSDVDECQ
TNLDQCDVNAYCMIYPNVISYTCQCKDQYEGDGFECNKIVDKVDKNLMVA
IGVSIGGGVLLIIVVVLVVVYCKSKSRYFRDLKRLNANTQAG
Run BLAST on NCBI

transcript from alignment at sc0000421:202115..204370-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022481 ID=TCONS_00022481|Name=TCONS_00022481|organism=Clytia hemisphaerica|type=transcript|length=2256bp|location=Sequence derived from alignment at sc0000421:202115..204370- (Clytia hemisphaerica)
TTGGTATTACGAAGGAAATTAGATTATGAGAAGACACAACGAATTGAGTT
AACACTCACAAATAAAACAAACCCAGAATCCCTCATCTATAATTACATTA
TAGTGCTTGACATAACTGATGTGAACGATAATGCACCGAGCCTCAAAGTT
TCTCCAGTTTTCCCAAGAATCACAACAAATTTCCCTAAAGGATCTTTAGT
ATCACATGTCGGTGTGCAAGACTTGGATTCTGTGTCCCAGACATTCACCT
TCTCCATTAATAACGGTGATCCAAAGAAATTATTCACTATTGATGACCAA
GGTAGCATCTACACAACTCAATGCCTAGGGACTGACGCGGTTGGACAGTA
CAGACTTGGTATTAGAGTCAAAGATGGTGTTTTTATAGCCAATAAAACAC
TCATGGTTCAAGTCCACAAAGCTTCAGATAAGGATTTTGACAACAATTGT
GGATTGGAATGTAATCCAATCACCTTTAGTGTGACCAGTACTGCTAATGG
TGACGTCACTTTCACCAATGTCGAACAAAATGGTCAAATTCTCAACCAAA
CACAGCTCCAGACAATTGTTGGTGATCCTCAAAGTACTGAATATTCAGAT
TTATCCAATGGTATACAAACGTCATTGGTCGAGTTTTTTGAACGTAAATA
TTCGTTGATTCGATTAAACGTTACCAATATGACCATTGTTGACCAACTTC
AGAAGCGGCAGAGAAGATCTGCAGATCCTGAAGCTTTTTTGAGTGCTCAA
TACATTTTTGAGGTCAAAACTACAGATGCAACTTTGCAAGAATTGAACCC
AATCAGTCAAAATGAAACCATCGAATTTACAAAGTCTTCCAAATACAGAT
TGCATACAAACGATCAGTTGAGTGTGGTTTCCGGTAAGTTTTGACTTACT
CGTTTTTTTATAAGAACATAATGTTCAATGGCAAAATCTTTATCAAAGGT
TAAGAACATTTTAAGGCTTTGGGGACTCTAAAAATACCCGATTTCTTAAG
AAATTGCACAAAAATACTCACTTAATTGTGAAAATAAGAACATGTTAAGA
ACAATTTTATGCTTCTAACTCCCAAAAAAAGTTAATAACATATCCAAAGG
GTTCAAAAGTTTTGAATATTCTTATACGCGTATCTTGTAAATCTCATTTA
ATTCGCAAAGGAAGCAATTTCCGGTATGTAGACAAGGCATTTAAAAACAA
AAGATCATCTTCGGGTGCCTAGCTAGTTAATATTTTTTTACATTTGACGC
ACTATGCAACAATTTTATTCACCATTCAAGTTTGAGATTTCCCTCTTTAC
ACCCCTGTTTGGAAGCAGACCAGCTGGCACCCCAGCCCCACTGGAAAATT
TGACCAAAATTTCGTCCCCGGTGGACAAAATACCCTACAATTTCAGCCCC
ACTGGGAAAATGACTTTGATTTCATCCCCACTCAAAATTCAATGTTTAAA
AATTGCACTCCAAAACCATCCCACTGGATTTTTTAACCTTGAAACAATAG
AATTTCCGTTGGGATTTTAATAGGAATTTTTATCCCCATCGAGGAAAAGA
GTTTGGCCAGGACTCTGAGACAGGGGTGTCTCTTTGATGGATTGTAATTC
AAGATCTTTCCGTTATTCTTTTTTTTTCTAGATGTTGACGAGTGTCAAAC
GAACTTGGATCAGTGTGACGTCAATGCATATTGTATGATTTACCCAAACG
TTATTTCGTACACCTGTCAATGCAAAGATCAATACGAAGGGGATGGGTTC
GAATGTAACAAAATTGTTGATAAAGGTAATCCTCACTTTTTTCATTTTGA
GAGAGAGTTTTCTTCAAAAGAACGAATAAAGAACGAATAAAGAACAACAA
ATTTTGAGGATGACGAACAGTAGTCACTGTTGCCTTGATTCAACTGTGTA
AATGTATGACTATCAAAAATGGGGGAAAGTCAGAAATAAATGCCTGGTTA
AAGTCAACTACACCTGCATAAAATAAATAATTGTTCTACCTTTATTTTTT
TTACCAAACAGTTGATAAGAACTTGATGGTTGCGATCGGTGTATCAATCG
GTGGAGGAGTGCTTCTCATTATTGTCGTCGTCCTCGTGGTCGTCTACTGT
AAAAGCAAATCAAGATATTTCAGGGATCTGAAACGACTCAACGCTAATAC
ACAAGCAGGGTAAGACAGATTTCTTGTTCTTTGTCAACCAACGCCCACCT
CTCCAGGGGGAATTTTGGAAAGCTGGGTGATAGATATGTATTGATCGGTA
AGGGCA

Coding sequence (CDS) from alignment at sc0000421:202115..204370-

>TCONS_00022481 ID=TCONS_00022481|Name=TCONS_00022481|organism=Clytia hemisphaerica|type=CDS|length=3537bp|location=Sequence derived from alignment at sc0000421:202115..204370- (Clytia hemisphaerica)
TTGATAAGAACTTGATGGTTGCGATCGGTGTATCAATCGGTGGAGGAGTG
CTTCTCATTATTGTCGTCGTCCTCGTGGTCGTCTACTGTAAAAGCAAATC
AAGATATTTCAGGGATCTGAAACGACTCAACGCTAATACACAAGCAGGGT
AAATGTTGACGAGTGTCAAACGAACTTGGATCAGTGTGACGTCAATGCAT
ATTGTATGATTTACCCAAACGTTATTTCGTACACCTGTCAATGCAAAGAT
CAATACGAAGGGGATGGGTTCGAATGTAACAAAATTGTTGATAAAGTTGG
TATTACGAAGGAAATTAGATTATGAGAAGACACAACGAATTGAGTTAACA
CTCACAAATAAAACAAACCCAGAATCCCTCATCTATAATTACATTATAGT
GCTTGACATAACTGATGTGAACGATAATGCACCGAGCCTCAAAGTTTCTC
CAGTTTTCCCAAGAATCACAACAAATTTCCCTAAAGGATCTTTAGTATCA
CATGTCGGTGTGCAAGACTTGGATTCTGTGTCCCAGACATTCACCTTCTC
CATTAATAACGGTGATCCAAAGAAATTATTCACTATTGATGACCAAGGTA
GCATCTACACAACTCAATGCCTAGGGACTGACGCGGTTGGACAGTACAGA
CTTGGTATTAGAGTCAAAGATGGTGTTTTTATAGCCAATAAAACACTCAT
GGTTCAAGTCCACAAAGCTTCAGATAAGGATTTTGACAACAATTGTGGAT
TGGAATGTAATCCAATCACCTTTAGTGTGACCAGTACTGCTAATGGTGAC
GTCACTTTCACCAATGTCGAACAAAATGGTCAAATTCTCAACCAAACACA
GCTCCAGACAATTGTTGGTGATCCTCAAAGTACTGAATATTCAGATTTAT
CCAATGGTATACAAACGTCATTGGTCGAGTTTTTTGAACGTAAATATTCG
TTGATTCGATTAAACGTTACCAATATGACCATTGTTGACCAACTTCAGAA
GCGGCAGAGAAGATCTGCAGATCCTGAAGCTTTTTTGAGTGCTCAATACA
TTTTTGAGGTCAAAACTACAGATGCAACTTTGCAAGAATTGAACCCAATC
AGTCAAAATGAAACCATCGAATTTACAAAGTCTTCCAAATACAGATTGCA
TACAAACGATCAGTTGAGTGTGGTTTCCGTTGATAAGAACTTGATGGTTG
CGATCGGTGTATCAATCGGTGGAGGAGTGCTTCTCATTATTGTCGTCGTC
CTCGTGGTCGTCTACTGTAAAAGCAAATCAAGATATTTCAGGGATCTGAA
ACGACTCAACGCTAATACACAAGCAGGGTAAATGTTGACGAGTGTCAAAC
GAACTTGGATCAGTGTGACGTCAATGCATATTGTATGATTTACCCAAACG
TTATTTCGTACACCTGTCAATGCAAAGATCAATACGAAGGGGATGGGTTC
GAATGTAACAAAATTGTTGATAAAGTTGGTATTACGAAGGAAATTAGATT
ATGAGAAGACACAACGAATTGAGTTAACACTCACAAATAAAACAAACCCA
GAATCCCTCATCTATAATTACATTATAGTGCTTGACATAACTGATGTGAA
CGATAATGCACCGAGCCTCAAAGTTTCTCCAGTTTTCCCAAGAATCACAA
CAAATTTCCCTAAAGGATCTTTAGTATCACATGTCGGTGTGCAAGACTTG
GATTCTGTGTCCCAGACATTCACCTTCTCCATTAATAACGGTGATCCAAA
GAAATTATTCACTATTGATGACCAAGGTAGCATCTACACAACTCAATGCC
TAGGGACTGACGCGGTTGGACAGTACAGACTTGGTATTAGAGTCAAAGAT
GGTGTTTTTATAGCCAATAAAACACTCATGGTTCAAGTCCACAAAGCTTC
AGATAAGGATTTTGACAACAATTGTGGATTGGAATGTAATCCAATCACCT
TTAGTGTGACCAGTACTGCTAATGGTGACGTCACTTTCACCAATGTCGAA
CAAAATGGTCAAATTCTCAACCAAACACAGCTCCAGACAATTGTTGGTGA
TCCTCAAAGTACTGAATATTCAGATTTATCCAATGGTATACAAACGTCAT
TGGTCGAGTTTTTTGAACGTAAATATTCGTTGATTCGATTAAACGTTACC
AATATGACCATTGTTGACCAACTTCAGAAGCGGCAGAGAAGATCTGCAGA
TCCTGAAGCTTTTTTGAGTGCTCAATACATTTTTGAGGTCAAAACTACAG
ATGCAACTTTGCAAGAATTGAACCCAATCAGTCAAAATGAAACCATCGAA
TTTACAAAGTCTTCCAAATACAGATTGCATACAAACGATCAGTTGAGTGT
GGTTTCCGTTGATAAGAACTTGATGGTTGCGATCGGTGTATCAATCGGTG
GAGGAGTGCTTCTCATTATTGTCGTCGTCCTCGTGGTCGTCTACTGTAAA
AGCAAATCAAGATATTTCAGGGATCTGAAACGACTCAACGCTAATACACA
AGCAGGGTAAATGTTGACGAGTGTCAAACGAACTTGGATCAGTGTGACGT
CAATGCATATTGTATGATTTACCCAAACGTTATTTCGTACACCTGTCAAT
GCAAAGATCAATACGAAGGGGATGGGTTCGAATGTAACAAAATTGTTGAT
AAAGTTGGTATTACGAAGGAAATTAGATTATGAGAAGACACAACGAATTG
AGTTAACACTCACAAATAAAACAAACCCAGAATCCCTCATCTATAATTAC
ATTATAGTGCTTGACATAACTGATGTGAACGATAATGCACCGAGCCTCAA
AGTTTCTCCAGTTTTCCCAAGAATCACAACAAATTTCCCTAAAGGATCTT
TAGTATCACATGTCGGTGTGCAAGACTTGGATTCTGTGTCCCAGACATTC
ACCTTCTCCATTAATAACGGTGATCCAAAGAAATTATTCACTATTGATGA
CCAAGGTAGCATCTACACAACTCAATGCCTAGGGACTGACGCGGTTGGAC
AGTACAGACTTGGTATTAGAGTCAAAGATGGTGTTTTTATAGCCAATAAA
ACACTCATGGTTCAAGTCCACAAAGCTTCAGATAAGGATTTTGACAACAA
TTGTGGATTGGAATGTAATCCAATCACCTTTAGTGTGACCAGTACTGCTA
ATGGTGACGTCACTTTCACCAATGTCGAACAAAATGGTCAAATTCTCAAC
CAAACACAGCTCCAGACAATTGTTGGTGATCCTCAAAGTACTGAATATTC
AGATTTATCCAATGGTATACAAACGTCATTGGTCGAGTTTTTTGAACGTA
AATATTCGTTGATTCGATTAAACGTTACCAATATGACCATTGTTGACCAA
CTTCAGAAGCGGCAGAGAAGATCTGCAGATCCTGAAGCTTTTTTGAGTGC
TCAATACATTTTTGAGGTCAAAACTACAGATGCAACTTTGCAAGAATTGA
ACCCAATCAGTCAAAATGAAACCATCGAATTTACAAAGTCTTCCAAATAC
AGATTGCATACAAACGATCAGTTGAGTGTGGTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012605XLOC_012605Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022481-proteinTCONS_00022481-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022481-exon-sc0000421-1575043694:203488..204370TCONS_00022481-exon-sc0000421-1575043694:203488..204370Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1575043694:202596..202739TCONS_00022481-exon-sc0000421-1575043694:202596..202739Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1575043694:202115..202359TCONS_00022481-exon-sc0000421-1575043694:202115..202359Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1510915933:203488..204370TCONS_00022481-exon-sc0000421-1510915933:203488..204370Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1510915933:202596..202739TCONS_00022481-exon-sc0000421-1510915933:202596..202739Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1510915933:202115..202359TCONS_00022481-exon-sc0000421-1510915933:202115..202359Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1491911889:203488..204370TCONS_00022481-exon-sc0000421-1491911889:203488..204370Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1491911889:202596..202739TCONS_00022481-exon-sc0000421-1491911889:202596..202739Clytia hemisphaericaexon
TCONS_00022481-exon-sc0000421-1491911889:202115..202359TCONS_00022481-exon-sc0000421-1491911889:202115..202359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:202115..204370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112026	0.108979	0.162867	0.0784614	0.163834	0.0711322	0.144101	0.134466	0.0881441	0.122125	0	0.0444553	1.01977	1.37081	0	0.0265376	0.0652794	0.375719	1.30124	2.81023	0.309716	0.574035	1.01386	1.74973	2.39956	3.2532	3.3045	2.75456	0.222317	0.270831
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024731EGF_dom
IPR020894Cadherin_CS
IPR000742EGF-like_dom
IPR015919Cadherin-like
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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