TCONS_00022486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022486
Unique NameTCONS_00022486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022486 ID=TCONS_00022486|Name=TCONS_00022486|organism=Clytia hemisphaerica|type=transcript|length=829bp
AATTTACGACTCGACTGATTTTGGAGACGaacattttgttgaaaaagaga
ACTCAAAGATCTATGTTTCCTTTTCTGAACCATTAATTGTTGGAAACATT
GAAGACAACGTTGAACCTGATGGTCAAGCATCTCCATTAGAGAGTTGTGA
AATTGCCAAAgacaaagattttaaaagtggTGTTTATCTCATCAAACATA
GCAATGGAGAGTCGAGACATGAGTATTGTGATACCTCAGATACTGCGGAT
CAGTGGATTAACATTCAACATCGTTTATCGTCAAGTGGAGATGGAGCCTT
CAATAAATATATGTATTGGCATAAAGCAGGACATAACGATGGCGGGAAAT
GGCTTGGATTGACCAAACTCTTCACTCAAACAAACGGGAAATCAAACACT
CTGGTTCGATTGGAGGTTCGCTTAAACGACGATCGATTCTTGTATGTGAT
TTTCAAAGGGTTTTATGTTGAAAACGAAACGAATAAATTTCGGTTGCATA
CTGGGAATTATTTGGAGGGGGATGCATGGCTTGGTGAATTATGGAAGTAC
CATGATGGGATGAAGTACTCAGTGCGCGACCAAGACTTCGATACTAAATC
CGGTTCTTGTAGTCAAAGTTTTGGTAATTTTGGATGGTGGTATAAAGCGT
GTATAGGAATCGATTTCAAcagtttaaaattcaaaaacggTACCATGATT
CAGTCGTTCAATGAAGGTGTAATGTTTATGAAGATTACTGACATAGCAAC
TTTGGACTGATGCAAGTTTGGGTGTCATATTTTGACCACGTGATCGTAGT
TAAGAGACTTTGAACTGATTAAAGTACGG
Run BLAST on NCBI

protein sequence of TCONS_00022486-protein

>TCONS_00022486-protein ID=TCONS_00022486-protein|Name=TCONS_00022486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
IYDSTDFGDEHFVEKENSKIYVSFSEPLIVGNIEDNVEPDGQASPLESCE
IAKDKDFKSGVYLIKHSNGESRHEYCDTSDTADQWINIQHRLSSSGDGAF
NKYMYWHKAGHNDGGKWLGLTKLFTQTNGKSNTLVRLEVRLNDDRFLYVI
FKGFYVENETNKFRLHTGNYLEGDAWLGELWKYHDGMKYSVRDQDFDTKS
GSCSQSFGNFGWWYKACIGIDFNSLKFKNGTMIQSFNEGVMFMKITDIAT
LD
Run BLAST on NCBI

transcript from alignment at sc0000421:83221..84049

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022486 ID=TCONS_00022486|Name=TCONS_00022486|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at sc0000421:83221..84049 (Clytia hemisphaerica)
CCGTACTTTAATCAGTTCAAAGTCTCTTAACTACGATCACGTGGTCAAAA
TATGACACCCAAACTTGCATCAGTCCAAAGTTGCTATGTCAGTAATCTTC
ATAAACATTACACCTTCATTGAACGACTGAATCATGGTAccgtttttgaa
ttttaaactgTTGAAATCGATTCCTATACACGCTTTATACCACCATCCAA
AATTACCAAAACTTTGACTACAAGAACCGGATTTAGTATCGAAGTCTTGG
TCGCGCACTGAGTACTTCATCCCATCATGGTACTTCCATAATTCACCAAG
CCATGCATCCCCCTCCAAATAATTCCCAGTATGCAACCGAAATTTATTCG
TTTCGTTTTCAACATAAAACCCTTTGAAAATCACATACAAGAATCGATCG
TCGTTTAAGCGAACCTCCAATCGAACCAGAGTGTTTGATTTCCCGTTTGT
TTGAGTGAAGAGTTTGGTCAATCCAAGCCATTTCCCGCCATCGTTATGTC
CTGCTTTATGCCAATACATATATTTATTGAAGGCTCCATCTCCACTTGAC
GATAAACGATGTTGAATGTTAATCCACTGATCCGCAGTATCTGAGGTATC
ACAATACTCATGTCTCGACTCTCCATTGCTATGTTTGATGAGATAAACAc
cacttttaaaatctttgtcTTTGGCAATTTCACAACTCTCTAATGGAGAT
GCTTGACCATCAGGTTCAACGTTGTCTTCAATGTTTCCAACAATTAATGG
TTCAGAAAAGGAAACATAGATCTTTGAGTtctctttttcaacaaaatgtt
CGTCTCCAAAATCAGTCGAGTCGTAAATT

Coding sequence (CDS) from alignment at sc0000421:83221..84049

>TCONS_00022486 ID=TCONS_00022486|Name=TCONS_00022486|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0000421:83221..84049 (Clytia hemisphaerica)
TCAGTCCAAAGTTGCTATGTCAGTAATCTTCATAAACATTACACCTTCAT
TGAACGACTGAATCATGGTAccgtttttgaattttaaactgTTGAAATCG
ATTCCTATACACGCTTTATACCACCATCCAAAATTACCAAAACTTTGACT
ACAAGAACCGGATTTAGTATCGAAGTCTTGGTCGCGCACTGAGTACTTCA
TCCCATCATGGTACTTCCATAATTCACCAAGCCATGCATCCCCCTCCAAA
TAATTCCCAGTATGCAACCGAAATTTATTCGTTTCGTTTTCAACATAAAA
CCCTTTGAAAATCACATACAAGAATCGATCGTCGTTTAAGCGAACCTCCA
ATCGAACCAGAGTGTTTGATTTCCCGTTTGTTTGAGTGAAGAGTTTGGTC
AATCCAAGCCATTTCCCGCCATCGTTATGTCCTGCTTTATGCCAATACAT
ATATTTATTGAAGGCTCCATCTCCACTTGACGATAAACGATGTTGAATGT
TAATCCACTGATCCGCAGTATCTGAGGTATCACAATACTCATGTCTCGAC
TCTCCATTGCTATGTTTGATGAGATAAACAccacttttaaaatctttgtc
TTTGGCAATTTCACAACTCTCTAATGGAGATGCTTGACCATCAGGTTCAA
CGTTGTCTTCAATGTTTCCAACAATTAATGGTTCAGAAAAGGAAACATAG
ATCTTTGAGTtctctttttcaacaaaatgttCGTCTCCAAAATCAGTCGA
GTCGTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012610XLOC_012610Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022486-proteinTCONS_00022486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022486-exon-sc0000421-1491911889:83221..84049TCONS_00022486-exon-sc0000421-1491911889:83221..84049Clytia hemisphaericaexon
TCONS_00022486-exon-sc0000421-1510915933:83221..84049TCONS_00022486-exon-sc0000421-1510915933:83221..84049Clytia hemisphaericaexon
TCONS_00022486-exon-sc0000421-1575043694:83221..84049TCONS_00022486-exon-sc0000421-1575043694:83221..84049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:83221..84049 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.12958	0	0	0.0609786	0.662113	0.619862	1.73592	1.37375	0.231895	1.60061	0.152227	0.158089	0.0324926	0	0.429565	0.660435	0.182485	0.127305	2.87693	2.18586	2.42756	3.39998	4.73064	6.03141	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00022486 vs. Swiss-Prot (Human)
Match: ANGL1 (Angiopoietin-related protein 1 OS=Homo sapiens GN=ANGPTL1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.121e-18
Identity = 59/202 (29.21%), Postives = 100/202 (49.50%), Query Frame = 2 
Query:  134 PLESCEIAKDKDFK-SGVYLIKHSNGESRHE-YCDTSDTADQWINIQHRLSSSGDGAFNKYMYWHKA----GHNDGGKWLGLTKLFTQTNGKSNTLVRLEVRLNDDRFLYVIFKGFYVENETNKFRLHTGNYLEGDAWLGELWKYHDGMKYSVRDQDFDTKSGSCSQSFGNFGWWYKACIGIDFNSLKFKNGTMIQSFNEGV 721
            P + C+ AK+     SG+Y+IK  N     + +C+ S     W  IQ R     DG+ N +  W       G+ DG  WLGL  ++  +N + N  + +E+    D+ +Y  +  F +E E+  +RL  G Y +G+A    +W  H+G +++  D+D D  +G+C+  F   GWWY AC   + N + ++ G       +G+
Sbjct:  276 PFKDCQQAKEAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRT----DGSVNFFRNWENYKKGFGNIDGEYWLGLENIYMLSN-QDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFYRLRLGTY-QGNAGDSMMW--HNGKQFTTLDRDKDMYAGNCAH-FHKGGWWYNACAHSNLNGVWYRGGHYRSKHQDGI 468
The following BLAST results are available for this feature:
BLAST of TCONS_00022486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL19.121e-1829.21Angiopoietin-related protein 1 OS=Homo sapiens GN=... [more]
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