|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022488 ID=TCONS_00022488|Name=TCONS_00022488|organism=Clytia hemisphaerica|type=transcript|length=1659bp
ttcctcttcgtcggtaaaatcgctatgaaattgcttaaatttcctcattc
gccgtaccagatataaaaagcttccgtcgtgcctgagTTTGACAAgtttg
acggtgtgacggtattaGCCTTTTCTGCCGTCGGTGTTTCagtctttgaa
ggaaaaagtgACAATATTTTTATGTCAAACTTGCCATGTGTCACAAAATA
TGGATTGAGCAAATTTTGTCGGTGCtccgtcggtatttcggtgttctCTG
ATCAAGATAAAGAATTGAATCATTATCATTAGAGTCATTATTATTTCACA
GATTTTCAGCGAGCTAGATTATTAAGTAAAACATCAGTGGAAACCATGCC
AGTCTTCCAAGCGCCCACACCGTGGTTACCCAAGAAATTGAAAGAGCCTT
TCAAGTGGTTCTGCACTGCGTAAGGTGTCGGTATAAACGAGCTGCAGTGT
TCAAGTGGTAAGCGAAAATATCTTTTCCATTCGGGGGCGGAAGAATGGTT
CTCTGATGGATTTATAGGTACCAATTGCTGTGTAGTAAAGAACCTATGGT
TTGTGGTTGTCAAAGAACGAATGGTTGCTTCGATTGATTCTTCGTCAGTA
CTTTCTGGTTGCAAATGTGTGTCTTCTGCGACCTCAACCTTTGCGCTGGA
AGAAGCGATCAAAGGATTTGTATTGCTCGCGAGTGGTATATCTTCTTTCA
ATATTTCACCTTTAAGAGCATTGGATTTAGTTGCTTCGAAGTCTTCTTCT
GAAGCGCCTGGTGATTCCTTTTCATTGGAATTTGTAGTGCGTGGTGATTC
CTTTTCTGATGATTGGTTTTCATTAGATTCTCCATTTTTCCCTCTTTCGG
ATTCATCTTTGGGTGATTCCTtctcaaagtaggatttctctGGAGGTTCT
TCTACACCATCTGGGGATTCCCTGATCATTTCAACGTCAGTAAAATTCTC
TTTCCGTTCATCAGTTTCACTTAAACCTTTAATAAAGTTCNTCAGTAAAG
TTCTCTTTCCGTTCATCAGTTTCACTTAAATCTTGAATAAAGTTTTCTGC
TTCCTCAGTGACATCAGTTATCTCATCCATTACGTTTCCCGATCGGTTAC
CGTTATTGAAAATATCCGATTCCACACTTCCATTATATTCTGATCGGGTT
GTATTAGTGTCAATAACAGATTCCCGCTCACTGATGTTACTCTCAACACA
GATATCCGATCGGGTCTGCTTCATCCCGATTCCAGAATCTTCTTCACTGT
GGAGATTTTCATCCATTCCGTACACAAATCGACTTCCTTCAcataaagtt
tcaaaatttccttcAGTAGGACTACAAATTAAATCCTTGTCGTTGATCAA
ACGACTTAGATGATCTAACCGATACGACGAGATGAGATTCGATAGAAGAC
CAAGTGTTAATTCTTCaggtttttcctcaatttcttcaatttcttgaagT
TTCTCGAAATTCGCCATCCATCCAAACTGTCAGTTAGCGTATAAATATCG
ATTCAGTTTAAAAAACTTAAACGTAAATTATTTACCATTTAATCCCAAGT
GCTTTTCCgccctttcttttataagaaaatttccaAGATTCCTATTTGAA
GACGCTAAATTAAACCATTGATtggcttcaaaaattgtattGTGCAATAT
GAGTTCAAT Run BLAST on NCBI protein sequence of TCONS_00022488-protein >TCONS_00022488-protein ID=TCONS_00022488-protein|Name=TCONS_00022488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MNGKRTLLXNFIKGLSETDERKENFTDVEMIRESPDGVEEPPEKSYFEKE
SPKDESERGKNGESNENQSSEKESPRTTNSNEKESPGASEEDFEATKSNA
LKGEILKEDIPLASNTNPLIASSSAKVEVAEDTHLQPESTDEESIEATIR
SLTTTNHRFFTTQQLVPINPSENHSSAPEWKRYFRLPLEHCSSFIPTPYA
VQNHLKGSFNFLGNHGVGAWKTGMVSTDVLLNNLAR Run BLAST on NCBI transcript from alignment at sc0000421:111083..112741 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022488 ID=TCONS_00022488|Name=TCONS_00022488|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at sc0000421:111083..112741 (Clytia hemisphaerica)
ATTGAACTCATATTGCACaatacaatttttgaagccaATCAATGGTTTAA
TTTAGCGTCTTCAAATAGGAATCTtggaaattttcttataaaagaaaggg
cGGAAAAGCACTTGGGATTAAATGGTAAATAATTTACGTTTAAGTTTTTT
AAACTGAATCGATATTTATACGCTAACTGACAGTTTGGATGGATGGCGAA
TTTCGAGAAActtcaagaaattgaagaaattgaggaaaaacctGAAGAAT
TAACACTTGGTCTTCTATCGAATCTCATCTCGTCGTATCGGTTAGATCAT
CTAAGTCGTTTGATCAACGACAAGGATTTAATTTGTAGTCCTACTgaagg
aaattttgaaactttatgTGAAGGAAGTCGATTTGTGTACGGAATGGATG
AAAATCTCCACAGTGAAGAAGATTCTGGAATCGGGATGAAGCAGACCCGA
TCGGATATCTGTGTTGAGAGTAACATCAGTGAGCGGGAATCTGTTATTGA
CACTAATACAACCCGATCAGAATATAATGGAAGTGTGGAATCGGATATTT
TCAATAACGGTAACCGATCGGGAAACGTAATGGATGAGATAACTGATGTC
ACTGAGGAAGCAGAAAACTTTATTCAAGATTTAAGTGAAACTGATGAACG
GAAAGAGAACTTTACTGANGAACTTTATTAAAGGTTTAAGTGAAACTGAT
GAACGGAAAGAGAATTTTACTGACGTTGAAATGATCAGGGAATCCCCAGA
TGGTGTAGAAGAACCTCCagagaaatcctactttgagaAGGAATCACCCA
AAGATGAATCCGAAAGAGGGAAAAATGGAGAATCTAATGAAAACCAATCA
TCAGAAAAGGAATCACCACGCACTACAAATTCCAATGAAAAGGAATCACC
AGGCGCTTCAGAAGAAGACTTCGAAGCAACTAAATCCAATGCTCTTAAAG
GTGAAATATTGAAAGAAGATATACCACTCGCGAGCAATACAAATCCTTTG
ATCGCTTCTTCCAGCGCAAAGGTTGAGGTCGCAGAAGACACACATTTGCA
ACCAGAAAGTACTGACGAAGAATCAATCGAAGCAACCATTCGTTCTTTGA
CAACCACAAACCATAGGTTCTTTACTACACAGCAATTGGTACCTATAAAT
CCATCAGAGAACCATTCTTCCGCCCCCGAATGGAAAAGATATTTTCGCTT
ACCACTTGAACACTGCAGCTCGTTTATACCGACACCTTACGCAGTGCAGA
ACCACTTGAAAGGCTCTTTCAATTTCTTGGGTAACCACGGTGTGGGCGCT
TGGAAGACTGGCATGGTTTCCACTGATGTTTTACTTAATAATCTAGCTCG
CTGAAAATCTGTGAAATAATAATGACTCTAATGATAATGATTCAATTCTT
TATCTTGATCAGagaacaccgaaataccgacggaGCACCGACAAAATTTG
CTCAATCCATATTTTGTGACACATGGCAAGTTTGACATAAAAATATTGTc
actttttccttcaaagactGAAACACCGACGGCAGAAAAGGCtaataccg
tcacaccgtcaaacTTGTCAAActcaggcacgacggaagctttttatatc
tggtacggcgaatgaggaaatttaagcaatttcatagcgattttaccgac
gaagaggaa Coding sequence (CDS) from alignment at sc0000421:111083..112741 >TCONS_00022488 ID=TCONS_00022488|Name=TCONS_00022488|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0000421:111083..112741 (Clytia hemisphaerica)
ATGAACGGAAAGAGAACTTTACTGANGAACTTTATTAAAGGTTTAAGTGA
AACTGATGAACGGAAAGAGAATTTTACTGACGTTGAAATGATCAGGGAAT
CCCCAGATGGTGTAGAAGAACCTCCagagaaatcctactttgagaAGGAA
TCACCCAAAGATGAATCCGAAAGAGGGAAAAATGGAGAATCTAATGAAAA
CCAATCATCAGAAAAGGAATCACCACGCACTACAAATTCCAATGAAAAGG
AATCACCAGGCGCTTCAGAAGAAGACTTCGAAGCAACTAAATCCAATGCT
CTTAAAGGTGAAATATTGAAAGAAGATATACCACTCGCGAGCAATACAAA
TCCTTTGATCGCTTCTTCCAGCGCAAAGGTTGAGGTCGCAGAAGACACAC
ATTTGCAACCAGAAAGTACTGACGAAGAATCAATCGAAGCAACCATTCGT
TCTTTGACAACCACAAACCATAGGTTCTTTACTACACAGCAATTGGTACC
TATAAATCCATCAGAGAACCATTCTTCCGCCCCCGAATGGAAAAGATATT
TTCGCTTACCACTTGAACACTGCAGCTCGTTTATACCGACACCTTACGCA
GTGCAGAACCACTTGAAAGGCTCTTTCAATTTCTTGGGTAACCACGGTGT
GGGCGCTTGGAAGACTGGCATGGTTTCCACTGATGTTTTACTTAATAATC
TAGCTCGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022488-exon-sc0000421-1491911889:111083..112741 | TCONS_00022488-exon-sc0000421-1491911889:111083..112741 | Clytia hemisphaerica | exon |
| TCONS_00022488-exon-sc0000421-1510915933:111083..112741 | TCONS_00022488-exon-sc0000421-1510915933:111083..112741 | Clytia hemisphaerica | exon |
| TCONS_00022488-exon-sc0000421-1575043694:111083..112741 | TCONS_00022488-exon-sc0000421-1575043694:111083..112741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000421 | supercontig | sc0000421:111083..112741 . |
Blast
The following BLAST results are available for this feature:
|
