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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022502 ID=TCONS_00022502|Name=TCONS_00022502|organism=Clytia hemisphaerica|type=transcript|length=5197bpRun BLAST on NCBI protein sequence of TCONS_00022502-protein >TCONS_00022502-protein ID=TCONS_00022502-protein|Name=TCONS_00022502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1070bp MILDEFTFEWEQALIIDEXTSIRHVTAGEAGVWSIDDSGRIYFRMGTSAYRun BLAST on NCBI transcript from alignment at sc0000424:88022..103429+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022502 ID=TCONS_00022502|Name=TCONS_00022502|organism=Clytia hemisphaerica|type=transcript|length=15408bp|location=Sequence derived from alignment at sc0000424:88022..103429+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000424:88022..103429+ >TCONS_00022502 ID=TCONS_00022502|Name=TCONS_00022502|organism=Clytia hemisphaerica|type=CDS|length=41769bp|location=Sequence derived from alignment at sc0000424:88022..103429+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022502 vs. Swiss-Prot (Human)
Match: PI16 (Peptidase inhibitor 16 OS=Homo sapiens GN=PI16 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 8.650e-30 Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1
Query: 154 LSDTQKEALLQLHNAFRSMVQPPAANMYKMVWDDDLERISKDFAGKCIVAHNPERHKEAKRFDWVGENIAWGTGSCGDKDCGDVYEGVKRWFTESKSYNYDSGECS--GKCTLYTQMVWWESNKLGCGAKRC--------GDRTILVCNYAPGGNYVGQRPYTHGKPCSKCPDNLTCEDNLC 669
L+D +K +++LHN +R+ V P A++M M WD++L +K +A +C+ HN ER + GEN+ T + DV ++ W E + YN + CS C YTQ+VW ++ ++GCG+ C + +LVCNY P GN G+RPY G PCS+CP C+++LC
Sbjct: 28 LTDEEKRLMVELHNLYRAQVSPTASDMLHMRWDEELAAFAKAYARQCVWGHNKERGRR-------GENLFAIT-----DEGMDVPLAMEEWHHEREHYNLSAATCSPGQMCGHYTQVVWAKTERIGCGSHFCEKLQGVEETNIELLVCNYEPPGNVKGKRPYQEGTPCSQCPSGYHCKNSLC 197 The following BLAST results are available for this feature:
BLAST of TCONS_00022502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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