TCONS_00022505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022505
Unique NameTCONS_00022505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022505 ID=TCONS_00022505|Name=TCONS_00022505|organism=Clytia hemisphaerica|type=transcript|length=1359bp
tttccggtctgcactttgttgacctgtgacctgtgacctgttgacctgtg
acctgtgacctgcgtttcgaactagccgatgGATAAATCACATCTGTTCC
GAAGTTGGTTGTAAAGAACGATTTATTGTAATTGATGGAAATGAAAAGTT
GTACAGATTCATTTGTTCAGCCGAAAAGAAGAAAGTAGCGGGTAATAAAG
GAGAAGTTAATGGATATGATATGTGTATACGTAATCCGATTCGTGGTAAT
CAATTTAAGAAATCCGAAAGGCTTTGTGAAGAGCACTTGAATGGAGCGTC
TGGGTCTACGGTTGAACAGTTAGACATTGGCCCGGTAACACGATCTATGA
CAAAATCACTGCCAACAGTTATAACCATGGGGGAAGGATGTAAACAAGAG
GAAAACATTGATAAATTCTATGCACGAACTGCAGgacaattttatatttt
tcgttCTTGTGGCATCAAATTGTGTAATTATGAAATGTACACTGCAGAAT
CGCTATCAAGCATATTCACCTATCTTTTAGATTTGTTCGGTTCATGTcct
aagaaagaaaatttgaaaggaatTGTATATGACAGAGCATGTGAACTGCA
CCCTTTTATAAATCGTTTGAGTGACGAAGGTAATAAATCAGCAGATAATT
ATAGAGGATTAAGTTACATAGTAGACTCTTTCCACGTGGAAAAGCATACA
CAACCGAAGTGTATTTTGGACGACCCTCGTTGCGCGTATCATCCAGATTT
AGAAAAGTTTTCACATGTTAAAAAAATGAACACTGAAGTTGCTGAACAAT
CTTTCAGTAAACTTAATCCGTTTAAGTTTGCTACGAGAAAAATGAGTTAT
GGAAAACGGTTAATGTTTTTTAAACTGATCGACCACGCATTTAATAAAAG
ACTAACAAAACGTTTCGATGTTTGAATACAATTTTTGTACATGCAGCACG
AATGGTTATTTTTACGACCATGGTATAAGTTACATTATATATGTTGTAAC
actttactctcgggtacttaatagccgagatccccaattttttttttgaa
agctctCTCTTTTGCCCTAAATCTGTTGTATTATCCTCagtttcaaaaat
gttccaccCAGCCCCCCCAGTTTATTGAATTTTTGAGATTGTTTTCAATC
CCGCCCAACCCCTTCGATTATCAGGTACCCAGGTACCCAGAGTACCCTTT
TATATAGGCTCTTTTCATTTGACATAGTTAACAATTATTGTAAAAACTGT
TTATTCGTCTCGATATGTTTTTATTACCAATGAAAGCGTAATTAGTTATT
ATATTTTTTCGgcaattttgtttaaatttcaaaatattaaatcaatatca
ataatcgaa
Run BLAST on NCBI

protein sequence of TCONS_00022505-protein

>TCONS_00022505-protein ID=TCONS_00022505-protein|Name=TCONS_00022505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MCIRNPIRGNQFKKSERLCEEHLNGASGSTVEQLDIGPVTRSMTKSLPTV
ITMGEGCKQEENIDKFYARTAGQFYIFRSCGIKLCNYEMYTAESLSSIFT
YLLDLFGSCPKKENLKGIVYDRACELHPFINRLSDEGNKSADNYRGLSYI
VDSFHVEKHTQPKCILDDPRCAYHPDLEKFSHVKKMNTEVAEQSFSKLNP
FKFATRKMSYGKRLMFFKLIDHAFNKRLTKRFDV
Run BLAST on NCBI

transcript from alignment at sc0000424:118915..120356+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022505 ID=TCONS_00022505|Name=TCONS_00022505|organism=Clytia hemisphaerica|type=transcript|length=1442bp|location=Sequence derived from alignment at sc0000424:118915..120356+ (Clytia hemisphaerica)
tttccggtctgcactttgttgacctgtgacctgtgacctgttgacctgtg
acctgtgacctgcgtttcgaactagccgatgGATAAATCACATCTGTTCC
GAAGTTGGTTGTAAAGAACGATTTATTGTAATTGATGGAAATGAAAAGTT
GTACAGATTCATTTGTTCAGCCGAAAAGAAGAAAGTAGCGGGTAATAAAG
GAGAAGTTAATGGATATGATATGTGTATACGTAATCCGATTCGTGGTAAT
CAATTTAAGAAATCCGAAAGGCTTTGTGAAGAGCACTTGAATGGAGCGTC
TGGGTCTACGGTTGAACAGTTAGACATTGGCCCGGTAACACGATCTATGA
CAAAATCACTGCCAACAGTTATAACCATGGGGGAAGGATGTAAACAAGAG
GAAAACATTGATAAATTCTATGCACGAACTGCAGgacaattttatatttt
tcgttCTTGTGGCATCAAATTGTGTAATTATGAAATGTACACTGCAGAAT
CGCTATCAAGCATATTCACCTATCTTTTAGATTTGTTCGGTTCATGTcct
aagaaagaaaatttgaaaggaatTGTATATGACAGAGCATGTGAACTGCA
CCCTTTTATAAATCGTTTGAGTGACGAAGGTAATAAATCAGCAGATAATT
ATAGAGGATTAAGTTACATAGTAGACTCTTTCCACGTGGAAAAGCATACA
CAACCGAAGTGTATTTTGGACGACCCTCGTTGCGCGTATCATCCAGATTT
AGAAAAGTTTTCACATGTTAAAAAAATGAACACTGAAGTTGCTGAACAAT
CTTTCAGTAAACTTAATCCGTTTAAGTTTGCTACGAGAAAAATGAGTTAT
GGAAAACGGTTAATGTTTTTTAAACTGATCGACCACGCATTTAATAAAAG
ACTAACAAAACGTTTCGATGTTTGAATACAATTTTTGTACATGCAGCACG
AATGGTTATTTTTACGACCATGGTATAAGTTACATTATATATGTTGTAAC
actttactctcgggtacttaatagccgagatccccaattttttttttgaa
agctctCTCTTTTGCCCTAAATCTGTTGTATTATCCTCagtttcaaaaat
gttccaccCAGCCCCCCCAGTTTATTGAATTTTTGAGATTGTTTTCAATC
CCGCCCAACCCCTTCGATTATCAGGTACCCAGAGTACCCTTTTATAGGCT
CTTTTCATTTGACATAGTTAACAATTATTGTGAAAACTGTTTATTNCAGC
CCCTTCGATTATCAGGTACCCAGAGTACCCTTTTATATAGGCTCTTTTCA
TTTGACATAGTTAACAATTATTGTAAAAACTGTTTATTCGTCTCGATATG
TTTTTATTACCAATGAAAGCGTAATTAGTTATTATATTTTTTCGgcaatt
ttgtttaaatttcaaaatattaaatcaatatcaataatcgaa

Coding sequence (CDS) from alignment at sc0000424:118915..120356+

>TCONS_00022505 ID=TCONS_00022505|Name=TCONS_00022505|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000424:118915..120356+ (Clytia hemisphaerica)
ATGTGTATACGTAATCCGATTCGTGGTAATCAATTTAAGAAATCCGAAAG
GCTTTGTGAAGAGCACTTGAATGGAGCGTCTGGGTCTACGGTTGAACAGT
TAGACATTGGCCCGGTAACACGATCTATGACAAAATCACTGCCAACAGTT
ATAACCATGGGGGAAGGATGTAAACAAGAGGAAAACATTGATAAATTCTA
TGCACGAACTGCAGgacaattttatatttttcgttCTTGTGGCATCAAAT
TGTGTAATTATGAAATGTACACTGCAGAATCGCTATCAAGCATATTCACC
TATCTTTTAGATTTGTTCGGTTCATGTcctaagaaagaaaatttgaaagg
aatTGTATATGACAGAGCATGTGAACTGCACCCTTTTATAAATCGTTTGA
GTGACGAAGGTAATAAATCAGCAGATAATTATAGAGGATTAAGTTACATA
GTAGACTCTTTCCACGTGGAAAAGCATACACAACCGAAGTGTATTTTGGA
CGACCCTCGTTGCGCGTATCATCCAGATTTAGAAAAGTTTTCACATGTTA
AAAAAATGAACACTGAAGTTGCTGAACAATCTTTCAGTAAACTTAATCCG
TTTAAGTTTGCTACGAGAAAAATGAGTTATGGAAAACGGTTAATGTTTTT
TAAACTGATCGACCACGCATTTAATAAAAGACTAACAAAACGTTTCGATG
TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012626XLOC_012626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022505-proteinTCONS_00022505-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022505-exon-sc0000424-1491911889:118915..120096TCONS_00022505-exon-sc0000424-1491911889:118915..120096Clytia hemisphaericaexon
TCONS_00022505-exon-sc0000424-1510915933:118915..120096TCONS_00022505-exon-sc0000424-1510915933:118915..120096Clytia hemisphaericaexon
TCONS_00022505-exon-sc0000424-1575043694:118915..120096TCONS_00022505-exon-sc0000424-1575043694:118915..120096Clytia hemisphaericaexon
TCONS_00022505-exon-sc0000424-1491911889:120180..120356TCONS_00022505-exon-sc0000424-1491911889:120180..120356Clytia hemisphaericaexon
TCONS_00022505-exon-sc0000424-1510915933:120180..120356TCONS_00022505-exon-sc0000424-1510915933:120180..120356Clytia hemisphaericaexon
TCONS_00022505-exon-sc0000424-1575043694:120180..120356TCONS_00022505-exon-sc0000424-1575043694:120180..120356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:118915..120356 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03651	1.51187	1.15876	0.898035	5.59345	3.84356	6.33076	7.78334	6.801	4.92411	3.09972	4.33905	2.48468	1.70633	3.96574	4.84282	4.99436	4.20979	3.35549	3.35207	5.07217	4.92927	2.37329	2.79006	3.59641	4.55723	2.05708	2.25393	1.80478	1.42697
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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