TCONS_00022531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022531
Unique NameTCONS_00022531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022531 ID=TCONS_00022531|Name=TCONS_00022531|organism=Clytia hemisphaerica|type=transcript|length=1453bp
GAAAATTGAATCAATGGTATCGCTAACAGTCGAAAACATCCTTGGGTGCC
TACATGCTTTTAGTTTACATTAGACAGCGCTGGACTCGGGCTTTCCATAC
TTGAAGCGGAGAGATGGTTTATCTTAATATGCATTTTGATTTATAATGAC
CGTCTTACAATTTATCCTTagttgaatttttaaaaacaaacaaatattca
aaatgttcCTTGAAGTTGTGTCAACTAAATTAATAAATGAACAGCGTTTA
TACATATGTCTGATTCTAATACCATTGGTATACATCATCTGGAGAAAGAT
TACGTCATCACCACCAAGGAGACGTGTTATAGGTTACGTCAAAGAGATTC
GAACACATCCAGTGAAATCATGCAAACCATATCATGTCAAAGAAATAGAA
GTCAGTTCATTTGGTTTAGAATTTGACAGgcAATTTGCTTTGCTGAACGA
ATATGGAACATTTGTGACATTAAGGAAATATCCCAAATTCGTTTTAATTG
ATCAAGAGATTTTGGGCGATGAAATTCGTTTACGAGCAGAAGGGATGCCT
GATCTTCGGCTGCCGTTGAAAATGACCAAGAAAGATGGTGACCATGTTGC
TGATGTCACTGTTTGGTCTATAACAGCAGAAGGTGTTCACGTGTCTCAGG
AAGCCGATGATTGGTTCGCTGAAATCTTAAACTTGGAAGGATGTAGATTA
TATTGTTTCCCTTCTGATGGTGTACCACgtaaaacgaaagtgaaaaatgt
tGGTCAACAGTTTGATATGATGTTTCCAGACGGTTGTCCTCTACTCATCA
CCTCGGAAGCCTCACTTTCTGCATTAAACATGGAATATTCACATGAAGAC
ATAGTCATGGATCGATTCCGTCCAAATATCGTCTTAGGAGGATGCTCTTC
ATATCAAGAGGATGTCTTGCAACACATACAAATTGGGGATCATGCTGTAA
TGAAAGGCTTATGGGCATGTGAAAGatGTGTTGCAATCAATGTTGACACG
CTCAAAGGAGAGAAAAGTTCTTatgatcttttgaaatttcttactAGGAC
ACGACCTGGAACCGTATACAATCCAAAGGTCAAAGGTGGTATTTTTGGAT
ATAATTACGGCGTTCTCAAACCTGGTATCATCAAACTTGGAGACCCTGTT
TACCAGCTTAGTTCGTagtcaatatttttttaggtaTAGCTAGGTTATTT
AATAGTTGAcacattttgactttttagaaagatttttaaacccatgactt
ttttgaaaaaatttttaaccCCACGACTTTTtgagaagatttttttattg
cgTTTTAGTAACTTTGAGTctcaaattcatttttcttattatttttttta
caagggGGGCGGGACACTAAAAAGCCAAATTTTCGACGAACCACAACGCT
ACTACTTAAGCCTTAAAAAGCTTTTCAGATTACCTTGCAGGACGAAATTT
AGG
Run BLAST on NCBI

transcript from alignment at sc0000424:254442..260842+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022531 ID=TCONS_00022531|Name=TCONS_00022531|organism=Clytia hemisphaerica|type=transcript|length=6401bp|location=Sequence derived from alignment at sc0000424:254442..260842+ (Clytia hemisphaerica)
GAAAATTGAATCAATGGTATCGCTAACAGTCGAAAACATCCTTGGGTGCC
TACATGCTTTTAGTTTACATTAGACAGCGCTGGACTCGGGCTTTCCATAC
TTGAAGCGGAGAGATGGTTTATCTTAATATGCATTTTGATTTATAATGAC
CGTCTTACAATTTATCCTTagttgaatttttaaaaacaaacaaatattca
aaatgttcCTTGAAGTTGTGTCAACTAAATTAATAAATGAACAGCGTTTA
TACATATGTCTGATTCTAATACCATTGGTATACATCATCTGGAGAAAGAT
TACGTCATCACCACCAAGGAGACGTGTTATAGGTTACGTCAAAGAGATTC
GAACACATCCAGTGAAATCATGCAAACCATATCATGTCAAAGAAATAGAA
GTCAGTTCATTTGGTTTAGAATTTGACAGGTATATTTTGCTATTGTTTTA
TAAAGAATTTACAAATTAAACCCTTTCGCACTTCTTTTTTAATCGGAATC
ATTtagataaaagtttttttgtctaaaagtaccaaaaatacaaaaaagaa
cacatttttttctttataaggcTGGAGCCCTGAAATTAGCCAAATTATTT
TCACTATAATATATcttaaagtaaaagctttttagataatctaaccatgg
caaacgaTCGCCCTTGACCtgctaagcaaccccagccctgaccaaaaaat
tggagttgcttgtAAAAAGAAATGTGTAGTAAATATATTCTAGTTCTCCC
GAAATCGTTAGAATCATTCATTTTTcactcttctttttttttatttaggc
AATTTGCTTTGCTGAACGAATATGGAACATTTGTGACATTAAGGAAATAT
CCCAAATTCGTTTTAATTGATCAAGAGATTTTGGGCGATGAAATTCGTTT
ACGAGCAGAAGGGATGCCTGATCTTCGGCTGCCGTTGAAAATGACCAAGA
AAGATGGTGACCATGTTGCTGATGTCACGTGAGTTATTCTGgattcaaaa
acaaattttcctCATATCATAATACTAATAAATCGCTATTTAAACGTATG
TGTTGGACTAAACTAAGTACTAAAAGGTCGAGCAGTTTTAATAGACTTTA
ATAGACCGACCCGGCTTGTTTTGAACCTCTtggaaacaatagagagactg
TCTAAAAATCTTATATTACTGAGCTATCAAAGTAAAATATCGATTCTAAC
AAATTACTCGAAGAAAACCCTTGCAAAGTGGCACAGCCTACTACCTGACG
GACCCCGATTTTGGTGATTGATACAAAATCTTAATAAAACAAATTCCAAG
GAAAATGCTAAATCTCGTAAATTGAAAGTACTTTCCAGACCGTCAACAGG
TCTACAGATTTACCTGAGTTTGCGACCAACAATATTTTTTACTATTAAAT
TACGTTAGGTTTTATTGACTATGAATGAATAAATTTGCTTTTTAGTGTTT
GGTCTATAACAGCAGAAGGTGTTCACGTGTCTCAGGAAGCCGATGATTGG
TTCGCTGAAATCTTAAACTTGGAAGGATGTAGATTATATTGTTTCCCTTC
TGATGGTGTACCACgtaaaacgaaagtgaaaaatgttGGTCAACAGTTTG
ATGTAAGTTAGCATAACAGAATATCTTTTagtagatcttatcggagtttt
ttcattttctaaagaagcgatgcattgtgggattgtttcgggagtattac
aatagaatttcctcgaggaattcctaagagtaagagatttctattgtaat
actcccgaaacaatcgcacaatgcatcgcttttttagaaaaatcaaaaac
tccgataaggtctatttgtCCCGCATCAAAATCCAGGTTCTTTGGCGACA
TGACAAACCCTTAGAAGCTCTAAAAACTTTCGTGGAACCAACCGCATGTG
GTTAGTTCGAAAGTAACCACGTGCGTCAAATTGGATGTGAATTCTGAact
ttaacctttaccacgccgaggccgtaaatttacgttctaataTATAGCCG
AGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcaaaagttatgacggaaagcgtaaaactgtcatttttcccaaaaag
acaaggcgtgcacggggtgaagttcccagagagaaggcgtggtaaaggtt
aaatggccattttaaaaatatttcctaaACTAGAGCTAGGCCAGTTAGCT
TTAAGAACCAAAATTTATCTCTTTAAACGGGCATAATCATAACTTTGTAA
CAATATAGACGGGACCCCCCGCATTAGTATGCATGCATGAGGTATAAaga
tttttcatgatttgttAAGtaacgtaatttccgccattatagaaacaaac
gttcgatttgcgtaagggtTCGCCTCttcagattcgaacgtttgtttcca
taatggcggaagttacgtaacttaacaaatcatgaaaaatctctTAACAT
ACTACCTCGATCCTACTAACCTGTCGACAGTTACATGGAAAATAGTTGTA
ACACATTCATACTACCTCCATCCTACTGACCTGTCGACAGTTAAACGGAA
AATAGTTGTAACATATTCTCTCGGAATCATATTTTTTCAGATGATGTTTC
CAGACGGTTGTCCTCTACTCATCACCTCGGAAGCCTCACTTTCTGCATTA
AACATGGAATATTCACATGAAGACATAGTCATGGATCGATTCCGTCCAAA
TATCGTCTTAGGAGGATGCTCTTCATATCAAGAGGTAGTTTTTTATACTA
CAGCGGAGTATCCATGGAGTTGTGGCATAGGAAACAGAAATTAGAATTGT
CTAATAATTCTCTATCAGAAAACTTGTTCTTCAGGAGACATTCGTGTTAT
AGAGTTTAGAGTTTAGAGAAAAAGACTTCCGCTGCACTGCATTAGTGGAG
TCTCTATATCTCGAACCTTCATATTTCTCGAATGTCTCTtcctccttaac
tcgaacaagtttgatggacccttcagttaacaatgtccCATAAACCTGTC
TCCATTACTCgaaactttcttctttttttcaaaattggaaagTTTGTACC
TTTGTTCAAATTATTGAGTTTCGACTATATCGGTATcggatcttataaaa
aaacaaaaaaacattttggatAAAAATATTAGAATGGACAAAGAAAGTGA
TAACgattttttggtgtttcaaTAACTTAACATCGAAATTTCCTCTAGGA
TTATTATTTGGAACTTGAGAATTTCAAAGCTAGCCTTACTCTGTGCTACT
TATAATCATTTACAAACATTAAAGTCGAAGTTACATCGAAAATAGAGACA
GTCTAATTGATTGAACTGTCAGGAACTGTATGTATTAGGGCGTTTTGACC
CACTATAAAGACATAACGTCTCAAATGGGCACTGCATTGAGATTCTTCAA
TCCTTTGCTTGAGCAAAATTTTAGTTTGACTTATGATTTTTTCAAGGATG
TCTTGCAACACATACAAATTGGGGATCATGCTGTAATGAAAGGCTTATGG
GCATGTGAAAGGTAAAAATAGATATCATTTCACCCTCTCTCTATCAGTTT
TCAAAGTGCCTCTGTTTCAAATGACGAAGTATTAAGAGGctgttttgttt
caaaattccaCAACATTTCAAGAATTTGGGataattactttttataaatt
tcaatTATCGTTTGCTCTGACATTTGCTTGAAAtacattgaaaaatgaaa
acttgtAAGCCTCAGCAaagattgggctattccagaaagaGCCTGTATGA
CGCCCGGtatgacgtccagggtggtctttaaaataaaaaatccagggtgt
tcTGTTTTTTTGAACGTAAAAGTCCaaggtggtcagtaaaatgcgGTCAA
AAATCTAGAGTggtccaaaaatttaaaaaaaaatccaaggtggtcctgaa
aaattgaaaaaaaatccaggggggtcAACTTTCCTAAAAAAGACCTCCTC
AGCATAGggattacaatttttttctggaatagcccattcaccggttctta
taaaaagaagagTACAAGTGATTACAatgctatttttctttttctagatG
TGTTGCAATCAATGTTGACACGCTCAAAGGAGAGAAAAGTTCTTatgatc
ttttgaaatttcttactAGGTATTGTGCTTTACTTTTCATCataaaaatg
tatttaaaatACTATTGGCAAAAATAGTTTTGGCCAAAACCAAAGAACGA
ATTCAGAATTATCTATAGTCTGATATTTAAAGATTGGCTAAGAAAATGCT
TCGGTTACAACATCTTTCTCTACAACATTTTAGTAAACATATTGAGAAAA
GTTTAGAAGAACATTTATGTCCCAATGTTAGCCTTGTGAGTTAACAAAGT
GTTGTTCTGGGGATGCGATAAATCTTAAAACTTGTGTGTACGGTTTTCTT
ATGTCTTTGCTCTATATCCTATACTATATCCCTTGATTCAATTTCTTTAA
GTTTAAAGAGCTTATAGCTTTATCAACAACCTTGTGTATAATGATGCCCa
atcatagtttgcacccctccctttttaataggggggggatgccaactttc
tggagggcctttgtagggggggggggNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgccgaaaaaactaggggggatgggaat
gtaggggggatcaaataaaaaaggggggtttggaaattttggtcaatttt
ctaatCAAATACAAATTGTCACAGTTTGTGTTTTAAATTGTTGGCTCGTG
ACTATAATACTTCATACTCTTTCTTGTTGATAATTTTGCtggtaggtggg
aaagcgagtttccttcgaaacggattttctgtaaaaaaaaaggggggata
agatttcattacaaaagggggggggatgggtatataggggggatgaaata
aacctaggggggttcatacccctctgcaaactatgccAATGCAATGTGTG
TTGATATCCGCTAGCATAGCTAACACCCAATAAAATAAGTCCAGCTAAAA
GGAACAGCCAAAATACTAAAACAGTGCGTTTTCAATATCTTTCAGGACAC
GACCTGGAACCGTATACAATCCAAAGGTCAAAGGTGGTATTTTTGGATAT
AATTACGGCGTTCTCAAACCTGGTATCATCAAACTTGGAGACCCTGTTTA
CCAGCTTAGTTCGTagtcaatatttttttaggtaTAGCTAGGTTATTTAA
TAGTTGAcacattttgactttttagaaagatttttaaacccatgactttt
ttgaaaaaatttttaaccCCACGACTTTTtgagaagatttttttattgcg
TTTTAGTAACTTTGAGTctcaaattcatttttcttattattttttttaca
agggGGGCGGGACACTAAAAAGCCAAATTTTCGACGAACCACAACGCTAC
TACTTAAGCCTTAAAAAGCTTTTCAGATTACCTTGCAGGACGAAATTTAG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012631XLOC_012631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022531-exon-sc0000424-1491911889:254442..254870TCONS_00022531-exon-sc0000424-1491911889:254442..254870Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1510915933:254442..254870TCONS_00022531-exon-sc0000424-1510915933:254442..254870Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1575043694:254442..254870TCONS_00022531-exon-sc0000424-1575043694:254442..254870Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1491911889:255240..255419TCONS_00022531-exon-sc0000424-1491911889:255240..255419Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1510915933:255240..255419TCONS_00022531-exon-sc0000424-1510915933:255240..255419Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1575043694:255240..255419TCONS_00022531-exon-sc0000424-1575043694:255240..255419Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1491911889:255887..256043TCONS_00022531-exon-sc0000424-1491911889:255887..256043Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1510915933:255887..256043TCONS_00022531-exon-sc0000424-1510915933:255887..256043Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1575043694:255887..256043TCONS_00022531-exon-sc0000424-1575043694:255887..256043Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1491911889:257882..258025TCONS_00022531-exon-sc0000424-1491911889:257882..258025Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1510915933:257882..258025TCONS_00022531-exon-sc0000424-1510915933:257882..258025Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1575043694:257882..258025TCONS_00022531-exon-sc0000424-1575043694:257882..258025Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1491911889:258738..258802TCONS_00022531-exon-sc0000424-1491911889:258738..258802Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1510915933:258738..258802TCONS_00022531-exon-sc0000424-1510915933:258738..258802Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1575043694:258738..258802TCONS_00022531-exon-sc0000424-1575043694:258738..258802Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1491911889:259339..259410TCONS_00022531-exon-sc0000424-1491911889:259339..259410Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1510915933:259339..259410TCONS_00022531-exon-sc0000424-1510915933:259339..259410Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1575043694:259339..259410TCONS_00022531-exon-sc0000424-1575043694:259339..259410Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1491911889:260437..260842TCONS_00022531-exon-sc0000424-1491911889:260437..260842Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1510915933:260437..260842TCONS_00022531-exon-sc0000424-1510915933:260437..260842Clytia hemisphaericaexon
TCONS_00022531-exon-sc0000424-1575043694:260437..260842TCONS_00022531-exon-sc0000424-1575043694:260437..260842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:254442..260842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.2183	7.34545	6.20765	6.1888	6.80114	4.91556	7.8373	7.72135	6.86099	5.98993	9.16252	6.24688	3.57355	4.4181	4.80439	6.82113	5.58915	7.08692	1.52663	1.06033	2.06804	2.4879	9.13304	8.28347	3.25807	3.77037	4.65299	2.96305	3.65922	4.50344
Blast
[Close]
BLAST of TCONS_00022531 vs. Swiss-Prot (Human)
Match: MARC2 (Mitochondrial amidoxime reducing component 2 OS=Homo sapiens GN=MARC2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.079e-36
Identity = 96/286 (33.57%), Postives = 142/286 (49.65%), Query Frame = 2 
Query:  329 IGYVKEIRTHPVKSCKPYHVKEIEVSSFGLEF----DRQFALLNEYGTFVTLRKYPKFVLIDQEILGDEIRLRAEGMPDLRLPLKMTKKDGDHVADVTVWSITAEGVHVSQEADDWFAEILNLEGCRLYCFPSDGVPRKTK--VKNVGQQFDMMFPDGCPLLITSEASLSALNMEYSHEDIVMDRFRPNIVLGGCSSYQEDVLQHIQIGDHAVMKGLWACERCVAINVDTLKG---EKSSYDLLKFLTRTRPGTVYNPKVKGGIFGYNYGVLKPGIIKLGDPVYQL 1159
            +G V ++  +PVKSCK   V E E ++ GL      DR + ++ E G  VT R+ P+ VLI      + +  RA  M  L LP K    +  H  +  ++ +  +G     EA  WF   L  E  RL  F ++   R ++  +  + Q F + +PD CPLLI ++ASL  LN     + + M+ FRPNIV+ GC +++ED    + IG   V K + AC RC+   VD   G    K   D LK      P      K+   +FG  Y V K G +++GDPVY++
Sbjct:   54 VGTVAKLWIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYENNCLIFRAPDMDQLVLPSKQPSSNKLH--NCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLVQFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRM-EKKMKMENFRPNIVVTGCDAFEEDTWDELLIGSVEV-KKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCDPSERELYKL-SPLFGIYYSVEKIGSLRVGDPVYRM 334
The following BLAST results are available for this feature:
BLAST of TCONS_00022531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARC21.079e-3633.57Mitochondrial amidoxime reducing component 2 OS=Ho... [more]
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