TCONS_00022533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022533
Unique NameTCONS_00022533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022533 ID=TCONS_00022533|Name=TCONS_00022533|organism=Clytia hemisphaerica|type=transcript|length=1417bp
CGggtattctcataaaaaagccaattttcaCAAGCTGTATGAGTAATTCT
CCaacctttttgtttttagattcaagcaagtaaaatataaaatatttaaa
aaaatggctaAGGAGAACATCTTCCCATTTGAAGTGTACATTGCATTTTT
CCTTTCCGCTTTCATATGCTTTATATACCATAAATTTTCGACGTATAAAC
AGCATCTTGATGTGAAGGGAGAAATTGTTGCATACATTAAAGAGATTCGA
ACGCATCCAGTTAAATCATGTAAACCTGCACAACTACAAAAAATTGAAGT
CACAAATCTTGGGTTCAAACATGACAGGCAATTCGTCTTATTAAACCAAT
ACGGaacatttttgacgtcaagAAAGTATCCCAAATTCGTTTTAATTGAA
CAAGAGATTTTGGGCAATGAAATTAGTTTACGAGCAGAAGGAATGCCTGA
TCTTCGGCTGCCGTTGAAAATGACAAAGAAAGATGGTGACCATGTTGCTG
ATTTTGCAATCTGGACCATCAAAGGACAAGGTGTTCACGTGTCTCAGGAA
GCCGACGATTGGTTCGCTCAAGTCTTAAATTTGGAAGGATGTAAATTGTA
TTGTTTCCCTACTGATGGGCCACCGAGGCGAACGAGAGACAAAGGTCAAT
ATGAAGTCTTTGAGAATTATGATAATACCCCGAATACTATGATGTACACA
GATGGTAGTCCTGTTTTAATATTATCACAACCATCACTGGTTGATTTGAA
TGACAAATATACAGAAGAAGATCTTAGTATGGACCGATTTCGTCCAAACA
TTGTTCTAGAAGGCTGTAAACCTTACGAAGAGGACACTTGGGGACGAATA
CAGAtcggtgatgacgtcataatggaGGGTGTTTATCCAAGTGAAAGATG
TGTGGCTATCAACGTTGTTCCAGACAAGGGTGCGATGAGCGACAAAAGTA
TTCTGAAATATCTAAATGAGAATCGTTCAGGTCCAGATTTTACACCTCAT
GCTCATAAACTTAAGGGCGGATTATTTGGATTCAATTACGGCGTTCGAAA
GACtggttttatcaaaattggTGATCCTGTTTACAAGTTGAAAGAATTAC
AGACCAGATCTGaattcatgaaaaatgactaaaaagcGATTAGACTCACG
TTTATAATATTGCCATATTTTACGAAAAGGATTTGAGAAACGATTATTCT
GCCTGAATACTTTATTGGACATGAATTTTTACACAATTAGACCGTGCTAA
TATAATCTATCCAAAGATTTACAGGCCTTTTTGCGAAAGTTTCGGGAATT
GATGAATTTTTCAAGAGACTATCTACGTTGCATTCAATGCTCATAATATC
CATTACATATGGTATGAACTTTTCCAATGTGTGCGTGCAACAATTTATCG
ACAACACACGAatggac
Run BLAST on NCBI

transcript from alignment at sc0000424:261245..267519+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022533 ID=TCONS_00022533|Name=TCONS_00022533|organism=Clytia hemisphaerica|type=transcript|length=6275bp|location=Sequence derived from alignment at sc0000424:261245..267519+ (Clytia hemisphaerica)
CGggtattctcataaaaaagccaattttcaCAAGCTGTATGAGTAATTCT
CCaacctttttgtttttagattcaagcaagtaaaatataaaatatttaaa
aaaatggctaAGGAGAACATCTTCCCATTTGAAGTGTACATTGCATTTTT
CCTTTCCGCTTTCATATGCTTTATATACCATAAATTTTCGACGTATAAAC
AGCATCTTGATGTGAAGGGAGAAATTGTTGCATACATTAAAGAGATTCGA
ACGCATCCAGTTAAATCATGTAAACCTGCACAACTACAAAAAATTGAAGT
CACAAATCTTGGGTTCAAACATGACAGGTAAATTCTTTTTCCctaattta
tgtttttttaagcaagtTCATCAACACATCTTGAAAACAAAACCGGGAAT
AAATGACAAATTTTGCCCAAACGTAATTTTTTCCTGgttcatgacgtaat
attttatacggaaacacacgaaaaacaccgggcgtttaaattcaaaactg
gtgGTAAACGCCCGGTGTTTTTTCGGTGCTcacgtataaaagattacgtc
atgaaaatCAAGAATTTCATAGAGGTACTGACTATCATTTTCAAATTGAC
TCAGTTTTACCTTTAAGGTATTGCTAAACATCAATTCTGAATATCCTAAT
TCACCAAAAATCAAAGCACAACAATGTTCAATcccaaaaaatcgaaattc
gaataatttttctatttttggtaCCCTTATAGAGATCCTCCTCCAGTTTA
CTTTGAACGAATGATTTTGAGATCGTCTCTCTTTAGAGggtaaatttaca
aattttccaTGGACGGATTTGGTTTCTGTAACCTTTAGAGAGATTTGTTC
TATTTCATAGGCAATTCGTCTTATTAAACCAATACGGaacatttttgacg
tcaagAAAGTATCCCAAATTCGTTTTAATTGAACAAGAGATTTTGGGCAA
TGAAATTAGTTTACGAGCAGAAGGAATGCCTGATCTTCGGCTGCCGTTGA
AAATGACAAAGAAAGATGGTGACCATGTTGCTGATTTTGCGTAAGCCATC
TTTTTTTAAGGACAAAATTTGTTTATTACTGTTTTCaagtcaactttttt
ttttgtgttttcaattttattcatttatttatttttttcagaaaaggtTA
TTTAAATCAATACAAAGCAACCTTGAGTACCGCGCTTTGATAACGACTTT
CTATTGGTCTAACGCACTGATTTggaaagcccaaagggctaaatgtcgtg
cttttgctgaaaagtatGCCGTTGTTACAAAAGAATTTCAGCACTTGACC
AATCNgccggaacagcctattttcgccggaaaaacggtatttcttgaatt
tctcgagctgtactttatattttttcatgaaattttgcacactgatgcaa
aatgacaatactaaaatgtgacggagcccgattttcgaaaaatatttttt
cccggccgagaatgccagaaatatgccggaaaaccgttttttttacattt
tcttgaattttcatctttagctttttctgattttttgcagaaagatgcgt
atttgcaatgctcaaaacatggccgagttcgatttttgagaaaaaatttt
tccgtttgaatatgccggaaatcaccgtctttgcagattttcattacatg
ttttccttgtatttctatgttcttcacacaaaaacattattgataacaat
gctcaccatcaagcatgattcaattgtcaataaaactgatttttgcgacc
agNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAttaatttt
tccctacaacccttccctctccccccatcaacaatcaatgatgaatttat
tgcgttatgcattttcgctaaacgatatattttctgattgatttttttct
cctcgcattgctatctaactttcatcatcaggtaggtccattcagcatct
agcttgttttttgtgttttcaattttgttcatttatttatttttttcaga
aaaggtTATTTAAATCAATACAAAGCAACCTTGAGTACCGCGCTTTGATA
ACGACTTTCTATTGGTCTAACGCACTGATTTggaaagcccaaagggctaa
atgtcgtgcttttgctgaaaagtgtgccgttgttacaaaagaatttcagc
acttgaccaatcagaagcttagtggtatttcgaaaacaatagaaactaTA
TTTCTTGCGATATCCACTTATTTTACCTGCaatggcttaaagcacgacat
ctagccattcgggctttataaatctatagtCTAATGGTCTTTAAATTGGG
ATGCGGTCAGTCCGGATTACCAATGATTCATTCTTGAAATGGCCGATTTC
ACGCTAGTACAATAGTCAGTATTTTTACCTTTTTCGATAGAATCTGGACC
ATCAAAGGACAAGGTGTTCACGTGTCTCAGGAAGCCGACGATTGGTTCGC
TCAAGTCTTAAATTTGGAAGGATGTAAATTGTATTGTTTCCCTACTGATG
GGCCACCGAGGCGAACGAGAGACAAAGGTCAATATGAAGTCTTTGAGAAT
TATGATAATACCCCGAATACTGTAAGTTTGATGAGTTTTTCTAAACTATT
CTTGTTGATTTTTTAACCCTACGCGCTTGACAATTTATCGTGCGAAATAc
atgaaatcaaagtaaaaacttatttgaaacCCGTGTATTAACAAAAGAAc
ttctcaaaatttttgctcGCGTGGCGTCGATGGCGGTGTTTAAATATGCT
GTGAAAGCAAACGATAGTCCCTAAAACTGaagtgacaaaagaaaaaagaa
aaagaatttttggtAACGAAAACAACCTGAACCCCTATGAATCGAATGTT
CCATGGATCGAAATTTCCATAGCAAAAAATCGAATAAATCTGTTTtacct
tttattttatttaaccaATTGCACGTTTATTTCAGATGATGTACACAGAT
GGTAGTCCTGTTTTAATATTATCACAACCATCACTGGTTGATTTGAATGA
CAAATATACAGAAGAAGATCTTAGTATGGACCGATTTCGTCCAAACATTG
TTCTAGAAGGCTGTAAACCTTACGAAGAGGTAGTTCATTCAATGACTTTT
TTTTGCCACCAAATGAACcacttctttcaatcttttttcagGCCAAAATA
CTTGGAAAAGCTTCCTGCAAGCGTCCGAAAGTGCAATATCCTATTTTCTA
GGTCTTCCGTTGAAAAAAtaggcgtagtggtatagtggttatcgtgCTTC
ACTTCTGCCCAGGAGACACGAGCTCAATACTCACCGTGGCCCTGCAATTC
ACTTGACAAGTGAATACTctttcgcccgggtcaacccatgccattcGAGG
AGAATTGGGTAGCATaataactctgatacaagacTATGGGTAGATATTCC
AGACATTGTTGTGTCGTGGGACACTtaggaggttctacacctgtgcggac
atccgttctcccgtgtagttcgagtgtcatgaTATACGCtggcagctcgc
atctgcagggttaTAATATCTGATTGCGCTGTAATCCCTACtccatcgtg
ggtaggacccattccgatacatcggagggcatatctatctatatctatcg
ttgaaaaaataatattttcttaatttcattTATAATACTTGGGTACAACG
CCCGTTAAAGGCAAATCTTTTCAAGTTAATTTAAACCTGTATTTTTAAGG
ACACTTGGGGACGAATACAGAtcggtgatgacgtcataatggaGGGTGTT
TATCCAAGTGAAAGGTATATACAgtgtgtgtgtttttttttcggCTTAGA
ACATAAGTCATTAGACGTccttcttattattcaaattccCAAGTAACATA
GTGAAAAAGATCTATACTGGGACCCCATCTCAACTTTTGCGAAAATttgg
tccccggtgggaaaataccctggaatttcagccccactgggaaattgact
ttgatttcaaccCCACTCGTAAATCAATGTctgaaaattgcactccaaga
CCATCCCCATTGGATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
ttttcgctaaacgatatattttctgactgatttttttctcctcgcattgc
tatctaactttcatcatcaggtaggtccattcagcatctagcttgtttaa
ccttggaacaataaaatttctatccccattgggatttcgataggaatttt
tatctccactgaagaaaaaagttccaccggggctgtgagacaggggtgtg
tcaTTAGACGTCCTTCTTATGATTCAAATTACCAAGTAACATAgtgaaaa
agaaagttttgaaaatttgcgaaaataatGGTTGCATTTTTTGCCACTTT
AGAATAAATTCTTATGACTTTCaatcgataacccaaatttatgacgattg
attttatttccattggtattaaaatttatttaccattttcaGATGTGTGG
CTATCAACGTTGTTCCAGACAAGGGTGCGATGAGCGACAAAAGTATTCTG
AAATATCTAAATGAGTAAGTCGTTATTCTTAGGAATAGTTTGAAATAATT
TCTCATCATTGTTatagtctgtacacagacccgatatctacggctaattt
caaaattcattgccgtagagggtttGCTAGTCATTGTCTTtgctgatttt
aaatttttcaaacctactgctgcgatggagtgcgggtgagacgacgagag
aagtgttgctatttaaaaattatactttatcGCAGAGGTTTccggacggg
aatttttttatcaaacagacaatgcggaCAGAGTGTTCTACGAAACGATG
AATTTACAGAGTACCTTTGTCATTGCGTCGTCAAAACTGTTCAAGCTGAT
AATCAGCttgtttgaaaattaaaacctcTTAATCGTCTTCTGTCATTGAA
AAAGCCTTTTTAGTTTAGTTTACTATATTGAGCTTTTCCTCTTCGAATGA
AAAATTGTCTGATCAAAAAGGCTCGAAGATAAAGCAGGCaaaaattgaag
aagttgaaaattgaacctTCAGTCACTAAAGTGAACATAAATGTCCGGGT
TAATCTGTATCGGACTCATTACTCATAATTATTGACAGCCAATAAATCGA
TAATGAacacaaaaatcagaaagtgaCTTTAACTTATTCGACACTTATTT
GTCAAAGTGCTATCCTGATTGAATGCGTTCTATATTGAATTAAATAGACC
TTCTCNACCTTATTTGTCAAAGTGCAACCCTGATTGAATGCGTTCTATAT
TGaattaaatagaccttttcatgaattacgtcacgaacatcacttacctc
gtattcaaaaaattaccatggtgattgtgtcccttgagacattaaatgat
ttttttatgaacgggaagtagttttgataaaatctgctgcggggagttaa
tcaccatggcaataatttcaaaacgaggcaaacgatgttcgtgacgtaat
ttatgaaaaggtctattgaatttTAACTTACCCATTTCATATCAACGAGA
GTCAaccgtttttattttgtttcttaGGAATCGTTCAGGTCCAGATTTTA
CACCTCATGCTCATAAACTTAAGGGCGGATTATTTGGATTCAATTACGGC
GTTCGAAAGACtggttttatcaaaattggTGATCCTGTTTACAAGTTGAA
AGAATTACAGACCAGATCTGaattcatgaaaaatgactaaaaagcGATTA
GACTCACGTTTATAATATTGCCATATTTTACGAAAAGGATTTGAGAAACG
ATTATTCTGCCTGAATACTTTATTGGACATGAATTTTTACACAATTAGAC
CGTGCTAATATAATCTATCCAAAGATTTACAGGCCTTTTTGCGAAAGTTT
CGGGAATTGATGAATTTTTCAAGAGACTATCTACGTTGCATTCAATGCTC
ATAATATCCATTACATATGGTATGAACTTTTCCAATGTGTGCGTGCAACA
ATTTATCGACAACACACGAatggac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012631XLOC_012631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022533-exon-sc0000424-1491911889:261245..261571TCONS_00022533-exon-sc0000424-1491911889:261245..261571Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1510915933:261245..261571TCONS_00022533-exon-sc0000424-1510915933:261245..261571Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1575043694:261245..261571TCONS_00022533-exon-sc0000424-1575043694:261245..261571Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1491911889:262105..262284TCONS_00022533-exon-sc0000424-1491911889:262105..262284Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1510915933:262105..262284TCONS_00022533-exon-sc0000424-1510915933:262105..262284Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1575043694:262105..262284TCONS_00022533-exon-sc0000424-1575043694:262105..262284Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1491911889:263735..263915TCONS_00022533-exon-sc0000424-1491911889:263735..263915Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1510915933:263735..263915TCONS_00022533-exon-sc0000424-1510915933:263735..263915Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1575043694:263735..263915TCONS_00022533-exon-sc0000424-1575043694:263735..263915Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1491911889:264280..264423TCONS_00022533-exon-sc0000424-1491911889:264280..264423Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1510915933:264280..264423TCONS_00022533-exon-sc0000424-1510915933:264280..264423Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1575043694:264280..264423TCONS_00022533-exon-sc0000424-1575043694:264280..264423Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1491911889:265044..265108TCONS_00022533-exon-sc0000424-1491911889:265044..265108Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1510915933:265044..265108TCONS_00022533-exon-sc0000424-1510915933:265044..265108Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1575043694:265044..265108TCONS_00022533-exon-sc0000424-1575043694:265044..265108Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1491911889:265987..266058TCONS_00022533-exon-sc0000424-1491911889:265987..266058Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1510915933:265987..266058TCONS_00022533-exon-sc0000424-1510915933:265987..266058Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1575043694:265987..266058TCONS_00022533-exon-sc0000424-1575043694:265987..266058Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1491911889:267072..267519TCONS_00022533-exon-sc0000424-1491911889:267072..267519Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1510915933:267072..267519TCONS_00022533-exon-sc0000424-1510915933:267072..267519Clytia hemisphaericaexon
TCONS_00022533-exon-sc0000424-1575043694:267072..267519TCONS_00022533-exon-sc0000424-1575043694:267072..267519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:261245..267519 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.3823	22.2929	9.6861	6.3303	11.9113	9.07277	12.9546	13.4403	8.91358	9.0745	7.52055	7.17444	6.37062	6.52287	8.26062	9.85033	12.4075	12.8827	3.18222	5.86201	13.1902	10.7135	21.4115	18.1925	5.4048	6.71208	7.74142	5.50012	11.4589	11.6806
Blast
[Close]
BLAST of TCONS_00022533 vs. Swiss-Prot (Human)
Match: MARC1 (Mitochondrial amidoxime-reducing component 1 OS=Homo sapiens GN=MARC1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.045e-39
Identity = 100/296 (33.78%), Postives = 145/296 (48.99%), Query Frame = 2 
Query:  227 VAYIKEIRTHPVKSCKPAQLQKIEVTNLGFK----HDRQFVLLNQYGTFLTSRKYPKFVLIEQEILGNEISLRAEGMPDLRLPLKMTKKDGDHVADFAIWTIKGQGVHVSQEADDWFAQVLNLEGCKLYCFPTDGPPRRTRDKGQYEVFENYDNTPNTMMYTDGSPVLILSQPSLVDLNDKYTEEDLSMDRFRPNIVLEGCKPYEEDTWGRIQIGDDVIMEGVYPSERCVAINVVPDKGAMSDKSILKYLNENRSGPDFTPHAHKL--KGGLFGFNYGVRKTGFIKIGDPVYKLKE 1096
            V  + ++  +PVKSCK   + + E T +G +     DR ++++NQ G  +T+R+ P+ VLI     G+ ++L A    DL LP+K    +  H        I+G+     +    W    L  +  +L  F     PRR       ++F   D     + Y+D SP LILS+ SL DLN +  E+ +    FRPNIV+ GC  Y ED+W  + IG DV ++ V    RC+   V PD G MS K  L+ L   R      P   KL  K  LFG  + +   G IK+GDPVY L +
Sbjct:   55 VGTVAQLWIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVINQEGNMVTARQEPRLVLISLTCDGDTLTLSAAYTKDLLLPIKTPTTNAVHKCRVHGLEIEGR--DCGEATAQWITSFLKSQPYRLVHFEPHMRPRRPHQIA--DLFRPKDQ----IAYSDTSPFLILSEASLADLNSRL-EKKVKATNFRPNIVISGCDVYAEDSWDELLIG-DVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYR---QCDPSERKLYGKSPLFGQYFVLENPGTIKVGDPVYLLGQ 337
The following BLAST results are available for this feature:
BLAST of TCONS_00022533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARC11.045e-3933.78Mitochondrial amidoxime-reducing component 1 OS=Ho... [more]
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