TCONS_00022536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022536
Unique NameTCONS_00022536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022536 ID=TCONS_00022536|Name=TCONS_00022536|organism=Clytia hemisphaerica|type=transcript|length=1791bp
tatagaATTACATTGAATAAGATTATgcaatactaaaatcaattattAAA
AATAATGGCGTTATCATTTGTTAGGAGTCTGATTAGCAGAGAGGCTGCTG
TTCTTACACCAATCTTATCAAGGATGTTTTCAATGTCTTCAGTAACAGGT
ATAAAGGCTGCAGAACTAACCAAAGACAATATGCCACCAAGCCTTGGATG
TCCTGTCTGTAGTAGGGGTATCACTTTTACTAAAAACgatgttttgtttt
tatctcAATTCATGACTCCCGAAGGTTACATGATTAGTAGAAGGAAAACa
gGAGTTTGCAAAAAACAACAACGTAGAATCTTCAAATATATTCATATTGC
AAGAAGAGAAGgcttATTACCAAGGAAACCACCAGTTGATGGCGGCGATC
CACCAGAGTATGGTCAAAAGTCCAAATCTCTCACCAAGAAAACATACAAA
ACCAGATTCCTGTGACGAACGAActgatatttttttgcaatctatttttg
taaatattttttagtcAAATATGAtataatttcattgtcttttttttctt
cttattagAATCATTTTCATGCCTGCTACCGTTTCAAAGGCTTCAACATT
ATAAACCTCTAGTATTTCAGTAATGTAATGTTCGGTAATATCATTGTTTG
TTCAGGTTTGTTCAGATCTGGACTTATCTACTGAATTCCGCTCGTTGAGG
TAGCATAAACAATGAAGAAAAATTCCACTGATTATtataattttccattt
tttttacagatctttctaagtgaaaaaaataaagatggctTCTCGAAGAT
TCTTTGTTGGTGGTAACTGGAAAATGAATTGTGACGTCAACAAGGCGAAC
AGTATCCTTGAGTTCCTGAACTCAGGTGAAATGAGCAAAGACACTGAAGT
TGTTGTATCACCACCATCGCTGTACGTCTCATACATCAAACAGAATCTGA
AAGCCGACAATGTCACTGTTGCTGTCCAAAATTGTCATACAGCTACCTCA
GGTGCTTTCACTGGTGAGATCTCAGCCGAAATGGCTGCAGATGTTGGTTG
CCAATGGGTCATTTTGGGTCACTCGGAACGCCGACATAAGTTTGGTGAAA
GTGACGAGTTAGTTGGTCAGAAAGTCAAACATGTGTTGGAGGCCACTAAA
TTGGGAGTTATTGCGTGTATAGGAGAACTTTTGGAAGAACGTGAAAAGAA
TGAAACCATGAGTGTTTGTGCTCGACAGATGAAAGCTATTGCCGATAACG
TCAGTGATTGGTCTAAAGTTGTCATTGCATATGAGCCTGTATGGGCCATT
GGCACTGGTAAAGTGGCCACTCCCGACCAAGCACAAGAGGTCCATGATGA
AGTCCGTAAATGGTTGCAAGCTAATGTAAGCAAAGAGGTGGCTGACTCGA
CACGTATCTTGTATGGTGGATCAGTAAATGCAGCGAATTGCAAGGAATTA
TCCAAGAAACCTGATGTAGATGGATTCTTAGTTGGTGGAGCTTCATTGAA
ACCAGATTTCGTTCAAATTGTCAATGCCAAATTGTAAATTGTGGATACAT
TAGATCTGTAGACCCATAGATAATAAGACAACGAATTTTGCTATGTTGAC
AATGACTTCGATTTATGCATTTCTTTTGAGATAATATCTTCTTTCAAAAA
TCATACCAAGTTAAAtagaatttttacaaaaaaaaaattagaatagatat
ttattttttataatgaatGAAACTTTGTgcttttcttttattcttttgtt
ttcttaaaGATGGATAATATTAAGAACTTGCAACACCAAAT
Run BLAST on NCBI

transcript from alignment at sc0000424:18090..21485-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022536 ID=TCONS_00022536|Name=TCONS_00022536|organism=Clytia hemisphaerica|type=transcript|length=3396bp|location=Sequence derived from alignment at sc0000424:18090..21485- (Clytia hemisphaerica)
TATAGAATTACATTGAATAAGATTATGCAATACTAAAATCAATTATTAAA
AATAATGGCGTTATCATTTGTTAGGAGTCTGATTAGCAGAGAGGCTGCTG
TTCTTACACCAATCTTATCAAGGATGTTTTCAATGTCTTCAGTAACAGGT
TAGTTTTATTGGTTTTCGATCATCCTTGACACTCTAATGGTCTCATATAA
TAATTTGCAACTCAGGGCATCTTTCAACTCTTGGTTGAGAAAATATTGAC
GAGGTCGTTAAGTAAATGATGATCTTACATGACTAAACAGTCTTTCAATG
TAACTATAGTTTTTGGTGTTCACTTTTTTAAGATTTGCAAGTTTCAGGCT
CGTTGTTTCAGGCTTTCACTCAAACTAAAACTTAAAAACAAGTTATTATT
GTAAGTTTGTGATTTTCCATTCAGGTAAAAAAATATCACTGAAAAATCGT
AATCTATCAAATTAATTGATTTTTTCTTAGGTATAAAGGCTGCAGAACTA
ACCAAAGACAATATGCCACCAAGCCTTGGATGTCCTGTCTGTAGTAGGGG
TATCACTTTTACTAAAAACGTATGGATGCTTTATTTTGATGTATTATTAT
CATTAAAATATCTGGTTAATTAAAAATGTCCTTGTGTTTGATAACAGTTC
AAAAACTATCAGTTTATAATTTTGATAAGTATAACTTCTCAACTTTTTTT
CATTTTTGGAAATATTTTTTCAGCTTTTTATAAATTTTACCAAATTTTTA
CTTCGCAAGATTGTATAATAAACTTCCTTCTACTCACTCTTAAAAATCAT
TATCATCCATTCAGGAAGTAAAAGCATCCTATCTGTGGTCATACAAACTG
TAACATAATATCAATGCTTGATCATATTTTTTTGTTTTTCCAGGATGTTT
TGTTTTTATCTCAATTCATGACTCCCGAAGGTTACATGATTAGTAGAAGG
AAAACAGGTTTGTATTTTTGAAATTTGACTGATTTTTTGACTACATCAAT
TTAACTCAAAGGTATTGTAACATGTGCAGGTTTTGTAATTTGAAAAATAC
AAACGTTTGCTCAATCACACTCCTAAAATCTTGAGTTTTGCTATTTTAGA
TTGTGTGATAAGGCCTGCTATCCACTTTTAAATGATTTAGTTTAGATTTA
TGGTGTGTGTGGTTGATCGCACTCCTCAGAGAGTATAGGTGTGTTTGGAG
GCGTGTGGGGTCATTACTCCCTCTAGGGAAGGAAGACTTCCTCTTAGTTA
CTAACCTTAGAACTCTCTATGCAAACACGTCAAGGAATCAGGTTATAATA
AAATGGCGATAAATTTAGTTGCAACTGACAAGCGATCTCATTAAAAGTTG
TTTACTTTTTTCCAGGAGTTTGCAAAAAACAACAACGTAGAATCTTCAAA
TATATTCATATTGCAAGAAGAGAAGGTTTGCTTTCCCTTTTTATATGTAA
CAATTAGTTAGTTTCTCATCATACAGCCTCATTACTGAGTTATAAATCTA
GCTAATTTTTGTTTGACTCGTTTATTCAAACTAGAATCCTTTACTAACAA
CGGCTCTAAATACATGTCCCTTTTTATACTCCGGGTATTTTTCAAGCACT
TTTCCACCACCGTTTTATTCAGTGGCAAAAACTTAATTTTAAATTGAGTT
TTCAAACTCAATTTTGGGGAGAAAGAAATGTTAAAGTTAATAATGGAAAG
TAGCGAAATGACAGTACAAAAACTTGAAAGAAAATCAACTCAATGTATTG
TAATGAGTCTAACAAAATTTTCATAATCAAGTAAGAATTTGTAGGCTAAG
ATACATGAAAACACTAATTTAGGACCAACCATGGTGGCCAACTTTTAAAT
ATCTGCTGCATTGAACCTCAACTTTCAGACTAAAACGGTTGTAAAGAAAA
GTGCTTGGAAAATACCTTGAAGGAGGCATTGGTATTTTTGAAGAGGGTAA
ACAATTTTTTTTTCAGGCTTATTACCAAGGAAACCACCAGTTGATGGCGG
CGATCCACCAGAGTATGGTCAAAAGTCCAAATCTCTCACCAAGAAAACAT
ACAAAACCAGATTCCTGTGACGAACGAACTGATATTTTTTTGCAATCTAT
TTTTGTAAATATTTTTTAGTCAAATATGATATAATTTCATTGTCTTTTTT
TTCTTCTTATTAGAATCATTTTCATGCCTGCTACCGTTTCAAAGGCTTCA
ACATTATAAACCTCTAGTATTTCAGTAATGTAATGTTCGGTAATATCATT
GTTTGTTCAGGTTTGTTCAGATCTGGACTTATCTACTGAATTCCGCTCGT
TGAGGTAGCATAAACAATGAAGAAAAATTCCACTGATTATTATAATTTTC
CATTTTTTTTACAGATCTTTCTAAGTGAAAAAAATAAAGATGGCTTCTCG
AAGATTCTTTGTTGGTGGTAACTGGAAAATGAATTGTGACGTCAACAAGG
CGAACAGTATCCTTGAGTTCCTGAACTCAGGTGAAATGAGCAAAGACACT
GAAGTTGTTGTATCACCACCATCGCTGTACGTCTCATACATCAAACAGAA
TCTGAAAGCCGACAATGTCACTGTTGCTGTCCAAAATTGTCATACAGCTA
CCTCAGGTGCTTTCACTGGTGAGATCTCAGCCGAAATGGCTGCAGATGTT
GGTTGCCAATGGGTCATTTTGGGTCACTCGGAACGCCGACATAAGTTTGG
TGAAAGTGACGAGTTAGTTGGTCAGAAAGTCAAACATGTGTTGGAGGCCA
CTAAATTGGGAGTTATTGCGTGTATAGGAGAACTTTTGGAAGAACGTGAA
AAGAATGAAACCATGAGTGTTTGTGCTCGACAGATGAAAGCTATTGCCGA
TAACGTCAGTGATTGGTCTAAAGTTGTCATTGCATATGAGCCTGTATGGG
CCATTGGCACTGGTAAAGTGGCCACTCCCGACCAAGCACAAGAGGTCCAT
GATGAAGTCCGTAAATGGTTGCAAGCTAATGTAAGCAAAGAGGTGGCTGA
CTCGACACGTATCTTGTATGGTGGATCAGTAAATGCAGCGAATTGCAAGG
AATTATCCAAGAAACCTGATGTAGATGGATTCTTAGTTGGTGGAGCTTCA
TTGAAACCAGATTTCGTTCAAATTGTCAATGCCAAATTGTAAATTGTGGA
TACATTAGATCTGTAGACCCATAGATAATAAGACAACGAATTTTGCTATG
TTGACAATGACTTCGATTTATGCATTTCTTTTGAGATAATATCTTCTTTC
AAAAATCATACCAAGTTAAATAGAATTTTTACAAAAAAAAAATTAGAATA
GATATTTATTTTTTATAATGAATGAAACTTTGTGCTTTTCTTTTATTCTT
TTGTTTTCTTAAAGATGGATAATATTAAGAACTTGCAACACCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012633XLOC_012633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022536-exon-sc0000424-1575043694:21338..21485TCONS_00022536-exon-sc0000424-1575043694:21338..21485Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1575043694:20917..21005TCONS_00022536-exon-sc0000424-1575043694:20917..21005Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1575043694:20529..20592TCONS_00022536-exon-sc0000424-1575043694:20529..20592Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1575043694:20061..20120TCONS_00022536-exon-sc0000424-1575043694:20061..20120Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1575043694:18090..19519TCONS_00022536-exon-sc0000424-1575043694:18090..19519Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1510915933:21338..21485TCONS_00022536-exon-sc0000424-1510915933:21338..21485Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1510915933:20917..21005TCONS_00022536-exon-sc0000424-1510915933:20917..21005Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1510915933:20529..20592TCONS_00022536-exon-sc0000424-1510915933:20529..20592Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1510915933:20061..20120TCONS_00022536-exon-sc0000424-1510915933:20061..20120Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1510915933:18090..19519TCONS_00022536-exon-sc0000424-1510915933:18090..19519Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1491911889:21338..21485TCONS_00022536-exon-sc0000424-1491911889:21338..21485Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1491911889:20917..21005TCONS_00022536-exon-sc0000424-1491911889:20917..21005Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1491911889:20529..20592TCONS_00022536-exon-sc0000424-1491911889:20529..20592Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1491911889:20061..20120TCONS_00022536-exon-sc0000424-1491911889:20061..20120Clytia hemisphaericaexon
TCONS_00022536-exon-sc0000424-1491911889:18090..19519TCONS_00022536-exon-sc0000424-1491911889:18090..19519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:18090..21485 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.46008	9.7136	7.41595	6.04612	3.48119	1.88638	1.75078	3.28474	5.85708	6.69416	5.21262	5.36173	3.0742	2.54462	2.32447	1.57986	2.45843	1.99485	0.725262	0.910721	3.0344	3.2819	5.63235	5.68958	2.63706	2.87186	2.24525	3.3946	3.93775	3.70334
Blast
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BLAST of TCONS_00022536 vs. Swiss-Prot (Human)
Match: TPIS (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=3)

HSP 1 Score: 305.064 bits (780), Expect = 2.086e-98
Identity = 157/247 (63.56%), Postives = 185/247 (74.90%), Query Frame = 2 
Query:  791 SRRFFVGGNWKMNCDVNKANSILEFLNSGEMSKDTEXXXXXXXXXXXXIKQNLKADNVTVAVQNCHTATSGAFTGEISAEMAADVGCQWVILGHSERRHKFGESDELVGQKVKHVLEATKLGVIACIGELLEEREKNETMSVCARQMKAIADNVSDWSKVVIAYEPVWAIGTGKVATPDQAQEVHDEVRKWLQANVSKEVADSTRILYGGSVNAANCKELSKKPDVDGFLVGGASLKPDFVQIVNAK 1531
            SR+FFVGGNWKMN        ++  LN+ ++  DTEVV +PP+ Y+ + +Q L    + VA QNC+  T+GAFTGEIS  M  D G  WV+LGHSERRH FGESDEL+GQKV H L A  LGVIACIGE L+ERE   T  V   Q K IADNV DWSKVV+AYEPVWAIGTGK ATP QAQEVH+++R WL++NVS  VA STRI+YGGSV  A CKEL+ +PDVDGFLVGGASLKP+FV I+NAK
Sbjct:   41 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDP-KIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHAL-AEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 285
The following BLAST results are available for this feature:
BLAST of TCONS_00022536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPIS2.086e-9863.56Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
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