TCONS_00022545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022545
Unique NameTCONS_00022545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022545 ID=TCONS_00022545|Name=TCONS_00022545|organism=Clytia hemisphaerica|type=transcript|length=323bp
CTTTTGGCCTCGATTTATGAATTCTTTTAAACCTGGCTctgataaagaat
aaaaaattatgataGAAGGCTGCGAAAGGAGGATCAAGAAGATCATACTT
TCCGACATAACAACCCGAAACACTTTGCAAATTACTTCAATATAATTCAT
ACGGGAATACCGTAGTTAATTACACCTGAGTTGGTAATTAATTACAAATT
GAGTCGGTAACACCGTCATGACCTGTTAAAATTGTTGCACTAATTATATC
CCTGTTAAGATTGCCCCGAACtataagaaaaacatatttcagAAAAGTCT
ACATCATAAAATACGAAAGCAGA
Run BLAST on NCBI

transcript from alignment at sc0000424:110338..110660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022545 ID=TCONS_00022545|Name=TCONS_00022545|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0000424:110338..110660 (Clytia hemisphaerica)
TCTGCTTTCGTATTTTATGATGTAGACTTTTctgaaatatgtttttctta
taGTTCGGGGCAATCTTAACAGGGATATAATTAGTGCAACAATTTTAACA
GGTCATGACGGTGTTACCGACTCAATTTGTAATTAATTACCAACTCAGGT
GTAATTAACTACGGTATTCCCGTATGAATTATATTGAAGTAATTTGCAAA
GTGTTTCGGGTTGTTATGTCGGAAAGTATGATCTTCTTGATCCTCCTTTC
GCAGCCTTCtatcataattttttattctttatcagAGCCAGGTTTAAAAG
AATTCATAAATCGAGGCCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012641XLOC_012641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022545-exon-sc0000424-1491911889:110338..110660TCONS_00022545-exon-sc0000424-1491911889:110338..110660Clytia hemisphaericaexon
TCONS_00022545-exon-sc0000424-1510915933:110338..110660TCONS_00022545-exon-sc0000424-1510915933:110338..110660Clytia hemisphaericaexon
TCONS_00022545-exon-sc0000424-1575043694:110338..110660TCONS_00022545-exon-sc0000424-1575043694:110338..110660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:110338..110660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622366	0.606905	3.3681	4.8259	0.839295	1.32644	2.00037	2.62182	1.04891	0.649623	1.57635	1.45072	2.06958	1.17876	0.5301	0	0.233604	0.239436	0	1.03846	1.25515	0.44026	0.356796	0.648759	1.00231	7.06744	1.28008	1.36614	0.78135	0.351896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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