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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022557 ID=TCONS_00022557|Name=TCONS_00022557|organism=Clytia hemisphaerica|type=transcript|length=520bp
taaaatctttaaaaaattatttttaacaagATAACGGAACCGCTTTAAAA
TATTACGTTCAACACTACAgggtcaaaacaaagatcttaAGaTCATCATC
ATTTTCGTACTAAATTGAAAAGAAGCTATACAAAGATGGGCGCTAAAATC
ACGACCATAATTGCACTAGTTGTTGCATTTGTGACGTTTCTTTTGATGTC
TATCGCGACTGGTTCCACCCATTGGATGAAAGCAGGAACATCACACTCTG
GTTTATTTGCATCATGTTATGAGATGAACGACGAATCCATTTGTGCTGAT
ATTGATTTCGATCTCAACGACACATTGTCCTGGATGAAGACCGTCCAAGC
CTTCTGTATCTTGGCCATCTTGACTCTCATCGTTGGATTTATCTTGGCTA
TCTTGGATATCTTCATGGAATCGATTAAACCCAAATTCAGTGCTATTGTA
TTCTTCATCTCTGCCTTTTGGCAATTGATCGCAATGGCTGTTTATGCAGA
TGAAACAAACACAGACAATG Run BLAST on NCBI transcript from alignment at sc0000427:44789..47293+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022557 ID=TCONS_00022557|Name=TCONS_00022557|organism=Clytia hemisphaerica|type=transcript|length=2505bp|location=Sequence derived from alignment at sc0000427:44789..47293+ (Clytia hemisphaerica)
taaaatctttaaaaaattatttttaacaagATAACGGAACCGCTTTAAAA
TATTACGTTCAACACTACAgggtcaaaacaaagatcttaAGGTAAGAATA
TTTGACGATtctattatattattttgagaatttgcaaattttgcttTTTG
TAGGTGGCAGGAACAACTAGTTTTGGTAAAAATTCGACCTTTCTTCCCAG
GCagatttttatacaaaaacacATCAAAGTCGCGCCAAAATCAAGTTACA
GAATAAGccctggggggggggcactacCCTGAAGTTGTCGTCTACGTTTC
AATATTTCTATTTTCCTAAGTACACTTCGTGAGAAATTATGCtattgatt
ttatttatgttttagaTCATCATCATTTTCGTACTAAATTGAAAAGAAGC
TATACAAAGATGGGCGCTAAAATCACGACCATAATTGCACTAGTTGTTGC
ATTTGTGACGTTTCTTTTGATGTCTATCGCGACTGGTTCCACCCATTGGA
TGAAAGCAGGAACATCACACTCTGGTATGACAAAAATATATTATATCTTG
TCACTAAAATGGCTGACAAAAGTTTATGCTTTTAAATTAGCGCTTTCTCG
ACCTAACGAAACTTTGtgcttgcgaaagtttgtacgcctaaagtatagaa
aaagctaaaaataaaTCTCATACTTAGGATTTAAAGCAAACTTATCTTGG
AATGAATATCCGCTACTAGGCTGCCAGGCTATACTTTATTGCTCaccact
ttttaaaattttgcaaagttttcttttcttccGGCGGTGTGATCCAGTGG
TCTTTTGCGGGAGGGAAGGAGCATTAAGTGTTTGTAGTGTTTGTTTGTGT
CACCTGATTGTAGAAAACACATCACATTTTTTCCAGGTTTATTTGCATCA
TGTTATGAGATGAACGACGAATCCATTTGTGCTGATATTGATTTCGATCT
CAACGACACATTGTCCTGGATGAAGACCGTCCAAGCCTTCTGTATCTTGG
CCATCTTGACTCTCATCGTTGGATTTATCTTGGCTATCTTGGATATCTTC
ATGGAATCGATTAAACCCAAATTCAGTGCTATTGTATTCTTCATCTCTGC
CTTTTGGCAATTGATCGGTAAGTGTAAATCAAGCCTTAAATGAAATAAGT
TGTTCTGTGTAAAAAGGGTCTTAATTAGACATCAGCTTAGACCTGAAAAA
TTTAACTCCAATGCTTAGAAAAAGCTTTCTCCCTTATTGCTTTTATGGTA
TTTCGAAATTTGGTTcatgtatttttttctgatgaatTATACCTGGATTC
ACAATCGTACTGTATTTTTACACTGtcattacacattttttataagaaca
aaaaactgtataagaacataaaaggCTTTGATGACCAAAGATATTgtgaa
caagttaagaacattttaaggctttgcatacaccaaattgcacaaaaata
ctcacaaaatggtgaaaataagaacaggttaagaacattttaaggctaaa
agctcaaaaaaaaagttaagaacatcctaaccgtaacaaaccgaacttcg
cgttatcttttcagtcagcgaagaagagtCTGGTATAGGTTAGTTTGGAA
ATAACTAAACTAAGCGAACATAGAAGGCGTAAGGCGAGAGCCAGTTTCAC
CGTCATAGACGACTATTCTAATAGTCATTTTCATAGCAGTCAGTCATAGC
ATTTTCCGTAACTTTTTTGCTTTGGGTACATTCAATTTAAAGCAAAATGT
GATTATCAAATTGGTAATCACTCCACCATCCGCACTCCGCACCAAATCTT
CAAATATATTTTGTTGGTTAAAAATGCATGTATCGCCCGAACAGAGTTTT
TGTTTTTCCGGGATCAAAAGGGCGGTATATGTGGCGGCTCTCCTCCCGGT
ACAGGTCCGTAAAAATGGGCCATGGAATAAATACATACCGTACTTACATA
TAACAATCCAAACACTCCCTTAACAATCAAATGCGCCTAAATCGTAAAAA
GTGCCTATACCGCAGCAAATATCCGAATCTTTTTGGTTTTGGCGCTTTAG
ATTGTTATAGGTAAGTACGGTAATTATATAACTTAAGGcgaaaaaataaa
gtctttttttcgtcaacagatgaaagataattttttccTTTTGTAACGTT
TAGCCGCCTACATTGCATCTTTGACACCtaaaaaggaaatttattttcgT
TGTTATTTTGAAACCTGGGATTTTGAAATATCAGAGGAAATGGCGAATAC
GGATGGTAAAGGAAAAAACAGTCTATTTTTCATGATGAAATTAACGgcca
tttcatttttcattgtaaaaaaaaaggctATTCAAAACTAATTTGATTTC
GCCCAtgtcactttaaggtatgaagaagaattttttccaagggtaatTTG
CATATTTTGTACAACTTTAACTTAGTTAGACTAAATTCAGACTAATTTCA
ATTATCTTAATTCTAGCAATGGCTGTTTATGCAGATGAAACAAACACAGA
CAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022557-exon-sc0000427-1491911889:44789..44879 | TCONS_00022557-exon-sc0000427-1491911889:44789..44879 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1510915933:44789..44879 | TCONS_00022557-exon-sc0000427-1510915933:44789..44879 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1575043694:44789..44879 | TCONS_00022557-exon-sc0000427-1575043694:44789..44879 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1491911889:45154..45312 | TCONS_00022557-exon-sc0000427-1491911889:45154..45312 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1510915933:45154..45312 | TCONS_00022557-exon-sc0000427-1510915933:45154..45312 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1575043694:45154..45312 | TCONS_00022557-exon-sc0000427-1575043694:45154..45312 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1491911889:45675..45905 | TCONS_00022557-exon-sc0000427-1491911889:45675..45905 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1510915933:45675..45905 | TCONS_00022557-exon-sc0000427-1510915933:45675..45905 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1575043694:45675..45905 | TCONS_00022557-exon-sc0000427-1575043694:45675..45905 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1491911889:47255..47293 | TCONS_00022557-exon-sc0000427-1491911889:47255..47293 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1510915933:47255..47293 | TCONS_00022557-exon-sc0000427-1510915933:47255..47293 | Clytia hemisphaerica | exon |
| TCONS_00022557-exon-sc0000427-1575043694:47255..47293 | TCONS_00022557-exon-sc0000427-1575043694:47255..47293 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:44789..47293 + |
Blast
The following BLAST results are available for this feature:
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