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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022558 ID=TCONS_00022558|Name=TCONS_00022558|organism=Clytia hemisphaerica|type=transcript|length=2023bp
ataccAAACATTCTCCTTTTCTTATTCCAATAATAAGAAAGATAACAATG
AATAATTATCTACATAAAAAGTCTCAAGgataaaaaaatgaacaaaaaaa
taccTCTAGAAatatgaatataaaaaaaactttcattaaaTAGTAACTTT
ATCTTAAGTAGATATatatgatatgagccctccgaatgcattcagaatgg
gtcctacccacgaaggagtaggaatcacagcgctgacagacactcgaacg
acactgggagagcgatgTTCACGCAAGACCGAACCCTATGAGTGCCACAg
cacgtcacaatgtctgtctTTATCTTAAGTGCATAATAATGTCGTTTTTT
AACAAGAAAATGTAGCCAAAGGCTCTTAATAACGATGAACTAATCACTTT
AAGTGGAGTCGTTTTATAATCACAAATTATTGTTTCAAATCAGATCAGCA
AAGCAGATTCATTAAGAGCCTTATTAGCACATTATTatataataattaaa
aaacaattACTTACACGTAATGAGGCTAATAAGAGGAGAGCGGGAAGTGC
TTGGTATGAGAGGTACCTACAATAAAAATTTGTAATTTCATGTAAGAGCA
CAGGGCCTTGATTGCCAATATATCAAGAACATGCTCTAAGacatccaatt
tcttagaaaattgcacaaaagtgaaaaataaaaactgtttatgaacattt
taagcttatcaaaaagttgagaatataAGGCTTTAAAAAATTTGTGGTAT
ACATGAAAGATAGAGTTATGATAACATAATTTCAATACAACAGAGACAAA
TCATAGAAAAAAAGCTCTGATTTGCCTAAAATTTTACTGTGGAGTGGAGT
GGAGTTGATTTTGACAGGACAGGGATGATAAAGTTTGAACGAGagccaaa
caaaacaaaaatgtcagAAAACTCCTTCAGAGACTAAAGTAATCCAGAGG
AGCTCAATTTTTGTTAACAAGTACATCAAACCCTCTCCAAAAAAgcttga
aattattttataaaatataatttgaaatatcaaCTTTCAACTGATATCAA
CTTTTGGTCTATAGTCCAACTTCAGAACACCCTCTTTATAGCGCCACCTG
GTCATATAAATGAATTCCAAAGTGTGATGTCGTCCCATCAACTCTCCATT
ACATAAAATATCAACATCACATTTCGAAGAATGCTCCAGCTTCTTTTGTA
AGAATTTCTTTAAATGGGCAATAGTGATATGCGAAGAAGTCCTCAAATAA
GGTTTATCTAATGGTCTGAATGatgtttgttttggttgttgAGGTGGTTC
CTCTGGTTCAAGAAAATTCAAATGTAAACCAATTTGTGATGAATCTAATT
TTTTGGGTTTAGGTGCATTCACAGGTGGCTTTTCAtcctctttttcattt
ttcttttcgtcaTCTTCTTCCTTTTTAGAACTAGAATCCATTATGGCTAA
AGTTAAATTTGAATCTGTGTTATTCTCGTCAGGGTCCACCATGCCACGTC
GCGAATAAAATAATTTACGCCTTTTCTTCTCATTTTGCGCCAGACCTGGT
ACAAGTTGATAAATTATATATTCAAGTTTTTTGTCTTCACGTAACAGCTC
CCACGGATTAGTTTCATGTATCAATGTCTCACAGTATGGGCATTTGTATT
CTGAAGTTGTTTCCAAATACTTGACAATACAGCTCCGGcaaaaataatgt
aaacactcaGTAATAGCCACAGGTCTTATCAAGTAACCATTGCATATTAT
ACAAGTGAAATTATCATTCAATTCTTTGACTTTAATACTTTCTTCAACCA
TTTTAGATTTGTTATGTTTTTCctgaagaatttgaaaaacttaTTATAGC
AAGAATTTACCAATTATTGTATAAAATAATACCATTTAAATATCCGCATC
TAGAATAAAGAATAATTATATCTTGACCTGACGTGATTCAGGTTTAGCtt
gtttgaattttgattgtttaGATGTTTTATAGGAATATTCCTTGatctaa
atttcaagaaatcaaaaatatgc Run BLAST on NCBI transcript from alignment at sc0000427:67938..70005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022558 ID=TCONS_00022558|Name=TCONS_00022558|organism=Clytia hemisphaerica|type=transcript|length=2068bp|location=Sequence derived from alignment at sc0000427:67938..70005+ (Clytia hemisphaerica)
ataccAAACATTCTCCTTTTCTTATTCCAATAATAAGAAAGATAACAATG
AATAATTATCTACATAAAAAGTCTCAAGgataaaaaaatgaacaaaaaaa
taccTCTAGAAatatgaatataaaaaaaactttcattaaaTAGTAACTTT
ATCTTAAGTAGATATatatgatatgagccctccgaatgcattcagaatgg
gtcctacccacgaaggagtaggaatcacagcgctgacagacactcgaacg
acactgggagagcgatgTTCACGCAAGACCGAACCCTATGAGTGCCACAg
cacgtcacaatgtctgtctTTATCTTAAGTGCATAATAATGTCGTTTTTT
AACAAGAAAATGTAGCCAAAGGCTCTTAATAACGATGAACTAATCACTTT
AAGTGGAGTCGTTTTATAATCACAAATTATTGTTTCAAATCAGATCAGCA
AAGCAGATTCATTAAGAGCCTTATTAGCACATTATTatataataattaaa
aaacaattACTTACACGTAATGAGGCTAATAAGAGGAGAGCGGGAAGTGC
TTGGTATGAGAGGTACCTACAATAAAAATTTGTAATTTCATGTAAGAGCA
CAGGGCCTTGATTGCCAATATATCAAGAACATGCTCTAAGacatccaatt
tcttagaaaattgcacaaaagtgaaaaataaaaactgtttatgaacattt
taagcttatcaaaaagttgagaatataAGGCTTTAAAAAATTTGTGGTAT
ACATGAAAGATAGAGTTATGATAACATAATTTCAATACAACAGAGACAAA
TCATAGAAAAAAAGCTCTGATTTGCCTAAAATTTTACTGTGGAGTGGAGT
GGAGTTGATTTTGACAGGACAGGGATGATAAAGTTTGAACGAGagccaaa
caaaacaaaaatgtcagAAAACTCCTTCAGAGAGTATGTGATTGCAGCAA
CAAAGTCTTTAATTTGAGCAATGTAGAGCTAAAGTAATCCAGAGGAGCTC
AATTTTTGTTAACAAGTACATCAAACCCTCTCCAAAAAAgcttgaaatta
ttttataaaatataatttgaaatatcaaCTTTCAACTGATATCAACTTTT
GGTCTATAGTCCAACTTCAGAACACCCTCTTTATAGCGCCACCTGGTCAT
ATAAATGAATTCCAAAGTGTGATGTCGTCCCATCAACTCTCCATTACATA
AAATATCAACATCACATTTCGAAGAATGCTCCAGCTTCTTTTGTAAGAAT
TTCTTTAAATGGGCAATAGTGATATGCGAAGAAGTCCTCAAATAAGGTTT
ATCTAATGGTCTGAATGatgtttgttttggttgttgAGGTGGTTCCTCTG
GTTCAAGAAAATTCAAATGTAAACCAATTTGTGATGAATCTAATTTTTTG
GGTTTAGGTGCATTCACAGGTGGCTTTTCAtcctctttttcatttttctt
ttcgtcaTCTTCTTCCTTTTTAGAACTAGAATCCATTATGGCTAAAGTTA
AATTTGAATCTGTGTTATTCTCGTCAGGGTCCACCATGCCACGTCGCGAA
TAAAATAATTTACGCCTTTTCTTCTCATTTTGCGCCAGACCTGGTACAAG
TTGATAAATTATATATTCAAGTTTTTTGTCTTCACGTAACAGCTCCCACG
GATTAGTTTCATGTATCAATGTCTCACAGTATGGGCATTTGTATTCTGAA
GTTGTTTCCAAATACTTGACAATACAGCTCCGGcaaaaataatgtaaaca
ctcaGTAATAGCCACAGGTCTTATCAAGTAACCATTGCATATTATACAAG
TGAAATTATCATTCAATTCTTTGACTTTAATACTTTCTTCAACCATTTTA
GATTTGTTATGTTTTTCctgaagaatttgaaaaacttaTTATAGCAAGAA
TTTACCAATTATTGTATAAAATAATACCATTTAAATATCCGCATCTAGAA
TAAAGAATAATTATATCTTGACCTGACGTGATTCAGGTTTAGCttgtttg
aattttgattgtttaGATGTTTTATAGGAATATTCCTTGatctaaatttc
aagaaatcaaaaatatgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022558-exon-sc0000427-1491911889:67938..68870 | TCONS_00022558-exon-sc0000427-1491911889:67938..68870 | Clytia hemisphaerica | exon |
| TCONS_00022558-exon-sc0000427-1510915933:67938..68870 | TCONS_00022558-exon-sc0000427-1510915933:67938..68870 | Clytia hemisphaerica | exon |
| TCONS_00022558-exon-sc0000427-1575043694:67938..68870 | TCONS_00022558-exon-sc0000427-1575043694:67938..68870 | Clytia hemisphaerica | exon |
| TCONS_00022558-exon-sc0000427-1491911889:68916..70005 | TCONS_00022558-exon-sc0000427-1491911889:68916..70005 | Clytia hemisphaerica | exon |
| TCONS_00022558-exon-sc0000427-1510915933:68916..70005 | TCONS_00022558-exon-sc0000427-1510915933:68916..70005 | Clytia hemisphaerica | exon |
| TCONS_00022558-exon-sc0000427-1575043694:68916..70005 | TCONS_00022558-exon-sc0000427-1575043694:68916..70005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:67938..70005 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
BLAST of TCONS_00022558 vs. Swiss-Prot (Human)
Match: PCGF3 (Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.163e-45 Identity = 91/253 (35.97%), Postives = 146/253 (57.71%), Query Frame = -1
Query: 1043 MVEESIKVKELNDNFTCIICNGYLIRPVAITECLHYFCRSCIVKYLETTSEYKCPYCETLIHETNPWELLREDKKLEYIIYQLVPGLAQNEKKRRKLFYSRRGMVDPDENNTDSNLTLAIMXXXXXXXXXXXXXXXXXXXKPPVNAPKPKKLDSSQIGLHLNFLXXXXXXXXXXQTSFRPLDKPYLRTSSHITIAHLKKFLQKKLEHSSKCDVDILCNGELMGRHHTLEFIYMTRWRYKEGVLKLDYRPKVDI 1801
M+ IK+ ++N + TC +C+GYLI +TECLH FCRSC+VKYLE + CP C +IH+++P + + D+ ++ I+Y+LVPGL + E ++++ FY + GM P + ++ +DS E + + KE + Q+ + L + R L + ++R S+ T+ HLKKF+ KKL SS ++DILCN E++G+ HTL+F+ +TRWR+K+ L L YRPK+D+
Sbjct: 1 MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNT--CPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRNGETKADDSSNKEAAEEKPEEDNDYHRSDEQVSICLE----------CNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDL 241
The following BLAST results are available for this feature:
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