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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022560 ID=TCONS_00022560|Name=TCONS_00022560|organism=Clytia hemisphaerica|type=transcript|length=935bp
ACTGAGGCAGATGGTTTTTGATTGGTGTTAACAATGATCTCCTCCGAGGG
TAATCAAACACTCAGAACAACTCAAGATGTCATCCGTTGAGAAAACTCTC
CATCTTCAGAATGTCAAAAGTCTTCGAATGCAATTGAATATGCCAAGAAT
GCCGGTTTCGAAAGCAGCCAACGAattaAAGACTTACTGCTTGCAACATG
GACCTAACGACCCCCTGATCAACAACAGCGCTCGCAAAGCAAATCCATGG
GCTGAAAAATCAAAGTGTAGTGTACTCTGACTCTTATTTAAGTTTATTAC
CATAAAGTACCGTACACATTACACTCGCCGAAAAAGACTTCGGATCGACT
TTAGTATCGTTGTTTTTCCTTTAGTACTGCTGTTAATATTGAATTTTATG
TTTCGCTAAATCGAATTATTCTTATTGTTTCCTCTTTTTGTTTATAATGT
GTAAATAGGGTTTTAACTAATTGAGATATTTCTCCACTCCATAAAggaat
tatgttaaaaatgttCTTCGTTGTCTGTTTTCCCTTGTTAcacttataca
gggtgtcccgaaaaaaaaagTATCcatttaacaaaatgtaaggaAATATA
ATtataccaacacaataattGAAAATCATTTCCTGGCTCGTTAAAGCACT
TAGgtcatttttggcatttttttaaCCGGTTAAATCCATCGGGGTAGATC
CGAATGGCTcgctgatacaggggtgttttaagacAATTCCATTCATGATA
TTCAGGACAACGTAAACTGATTCAATTTTCCATTCCCGGGAAACCTTTTT
CGTTACCACTTCACAGTGAAATTTGTGATATTATTGACATTTTTTCCGGG
AATGAAAGTTTCTACGGTTTCCATAAAAGAGGATAAaccaatttattttt
tatgatcaAGTTTATATATTAAATCACTGCCGGCC Run BLAST on NCBI transcript from alignment at sc0000427:96515..101412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022560 ID=TCONS_00022560|Name=TCONS_00022560|organism=Clytia hemisphaerica|type=transcript|length=4898bp|location=Sequence derived from alignment at sc0000427:96515..101412+ (Clytia hemisphaerica)
ACTGAGGCAGATGGTTTTTGATTGGTGTTAACAATGATCTCCTCCGAGGT
GTGTTTTTAATTATCTTCCTTCTTTTGTTCTTCTTCAATATTCTTGTTTT
TTGTTCTTTCATGAATTTTTGAGGGGCAGCTGGTTTTAATCATgttactt
tttataagaatataaatgagtttttttttaagaaacgaTAATTGAGCTAT
AGTCTCAGTACTGTCAGGACTTCAACACTCTCAGGGCAATATCTTTTGTA
CTTCGACCTGTCATTCTCTTCAGGTATAATAATgcaaatttatataaaaa
tgaacttttgatttgtgcttgcttataaaaagtttaaatttttatattta
tcataaaaatttcttctttttctttattttattcataCAAGCTCAAAAAG
CAAACAATAGAACTTCGTATAATGATAttgaacaaaatgaaaaaaaaata
ttcatcttcgtttttttttgttgtgttcTTTGAGGAGAACTTTTGGAAAG
ACAGTTCTCATACGCCcgcttttttttgttttgtgtgtGAAAATTGAAGA
ATCAAAGGCTCTGGAGtacttcgatttgaaattaAAGAAGCGAATTTCTT
AGTCATCAAACAGTTCTAATTTGGAAGAGGTTTACTTTCCAAATTTCGCT
TGATCGATTTTCTTGGTGATAGTCAAAGTTTCAAGAACAAAGATTTGTTC
AATTTCTGTTATTGTTTCATTTAAAGGGTAATCAAACACTCAGAACAACT
CAAGATGTCATCCGTTGAGAAAACTCTCCATCTTCAGAATGTCAAAAGTC
TTCGAATGCAATTGAATATGCCAAGAATGCCGGTTTCGAAAGCAGCCAAC
GAGTAAGTGATTATCATTATTGTATGTCACAAAACGTAAAAATAACATCC
ATTTTTGTCGTTCCCCTGCTATGtacatgttttcttttcattggGTCTTA
AAAATTAGTCCTCAAATTAATTTTAATCACCTTTTAATTGAAGTTttgaa
ttaaaagaattactGCAATTACGAATGTTCTTACGAGTTCACATAATTTT
GAGCAAGTTTGGTTaatttattcaatttaattCTGGTCATGTTCTTacga
tatttttattttccctAATTTTCCCtattcagcctaaatgttcttataat
ctGGGTTCTAATAAACAAAACACTTTAACGTCCAATGCATAATCATCATA
GAATGTCATCAACTGACATACATAACGTCATTTTAACGTTTgattaacgt
tcatctaacgtccaTGACCACAATATCCATTTGACGTTGAAACAATATTG
AATTCACTTACCACAGATTCCCTCAGATCACATTTTGTtagaattttatt
gattttataaaatttcGAAATACTACGTATACGATAGCTTCATTTAtaat
agtctgaatcgcagacctctatgactctatagatatacttcctataagaa
actattttcgctagaggatgagcagaagcctacatTTATAACACACTCCC
TTcttacagacccactggaaaaattggccaaaatatcgtcccctgtggaa
aattatcctcaaatttttgtccactgaaaataatcaaataagccaatcct
cactacaaaatataatgtttttttttcctatcctcactgaattttctgac
ttgaaaacaaaagaattgaaatccccagcctttaaaatatgggaatatta
atccccatcgagtttcaggccgttatttttatcccaacttgctgaaagaa
tcctaccgggtctgtgagaagggggtgtattaagGTCTGGCTCAGTTTGG
CTGTAATAACTTAACTGTAAAGTGGTCCAACTTTCGGTACAAAATCACCG
CTTTAGCTTCAACCTTACAACACACCCACTTTTAAAAACACGATTTCGAA
TAATATTTCGAATGATATTAGCCTTTTTTTCGGGAAAATCACCTCTAATT
TCTCATGTAATAACAACCcaaaagaattgaagcaaagacagtcaaagtct
tcaaagaaagactcaacactgcatggagtaaacacccgaaaagattcaac
acaagacaattgtaaaatacgttgtataatcacgatcagttccagaggcc
ctcgtgcgcctagaactttgttacattataataataataacccTTCCCAA
TTTTATATCTGAAGTTACACACAAAACCTGAACTTTCATGAAGCACAGGT
CTGTTGCCATGTTTTGCTTTTGAGCTACAAGCATGGACATTAAGGtctgt
agacttttcaaaaattcctcaAAGGTACCAAGAAAAGCCTTTTTGACACT
TGGGAAATTCCCCAAATTAACCACAAGTATTTGGTATGCTAGCAGTCCAT
TTGATCTTTTGACTTCCAAAGACTGAAGAAAATGACTGAacgtgactgaa
aatgactgaaaatgggtGAACTTCAGCTACACAGGTGGTGGGTGCACCAG
AGCTCTGAAAAGTTGTTTATAATTGATTAAACCATCTCGAATATAGTCTA
ATTAGATGTCTtctcgaaaaagttgaagagcAAAACTCATTGAACCTTTA
ATCTTCAATCTCAGACCAAAAAAAGGCCtggtaaaaatgggttttcagag
cttaattagaaatttttcatgcatttttgaaaagtctacaacctTTAGTC
CGTAATTGTATTTATTATTAGAATGATGAGCCAATCAGATGTCCTAAAAT
GAAATCAAATGCAAAGGCCACAAAACATGCCAGTTAATACTTCTACTTTA
AGAGTCACTTGTCGTAGTTGTGAGATCTCAGACATACCTCAAATAAGGCC
CTAACAGTACTACTTGACTATGAAAACAGCCTTGAATCATAGCCAGGAAC
CTTGaatcatggcgttctaaatatACTAGATTTAAAACGCCATGCCTTGA
ATACaagaatttcttttgtaagACAGATGAAAATATCTACTAGAGTGATC
CCACACCCTAACGAGACAGGGATGTCATTTCTAACATAACTTTTTCATTG
AATCGAGTGAGTTTCTTCTTgaattaaattttatcaaatgaacTTTTTGC
TCTAGAACTGGCCATAGTCCTCTTCAAAAACAGGCTATATATTTTCTACG
TTTACGAGTTTTTTTTTACTCGAATTTTCTCAAATGAGCTTTTGGCTGTA
AAACTGGTCAGAGCCTTCTTCAAAAACAGGTTATATATTTTCTACGTTGA
CCATAACATAAACCTTGTtacatttttggaagttttATCTTATCCGTTAT
CTTGATGGCAAAGCTCTCATACAATATATACCTGGTATGATTTCTAAAAT
ACCGAACGTTAAAGTATtcttacataagtgttcccgtttgaTATcaaaca
catatttcatatcagggcagTATCTGCCTTTTGTTCTGATATTATAAGcg
aaaaaatgatattttcctctttctgcccaatcttgttccacatacaacgt
gtcaatccaatgtgaaaaagcttgtgaattaaaattgatgagtaaggagt
aagcaaacgatattactctttttaaaaacaacACCTTTAAGAGGTGCCTC
TAAATTGAATAAttcttgaatttcaaaaataccgTCCTTTCTGGTCCGGT
AACAGGGCTAAATTTGCTCATTTTAGGTTTTTTTAAAGATCTTCAGGCTG
AATATTATGGACGTTAGCTGGACTCTGACATTTAGCTACTGTCAAAGCAA
AAGGTCAAATCTCAAAAATAGATTCTGATAAATCTAAAAATGGTTATGCT
AGACTAACCTTGAATTCTGAGATTGAACCGTTTTTCATGTAGAAAAGAGG
CTCTTCACTTTATGGAAAAAGGGTCATCTCAAAATTTAAGGTAAGCCAAA
ATTCTTGTTTTACTTAAACACTAAtttgagattggaccttttgcCTCGTT
GGTTGTACCAGGcaggaattcatgatattcatgacgtaaagttttctacg
gaaagaccccggtttttgccagtagtggcaaattttatccaatttttgtc
tagtttaaatttgccactagtggctaaaaccggggtatttctctagaaaa
cattacgtcatgaatatcatgaataagggTAATAACTTATAGAGGtcttt
tcaaatatttgtttgaaattgattttttttatttcagattaAAGACTTAC
TGCTTGCAACATGGACCTAACGACCCCCTGATCAACAACAGCGCTCGCAA
AGCAAATCCATGGGCTGAAAAATCAAAGTGTAGTGTACTCTGACTCTTAT
TTAAGTTTATTACCATAAAGTACCGTACACATTACACTCGCCGAAAAAGA
CTTCGGATCGACTTTAGTATCGTTGTTTTTCCTTTAGTACTGCTGTTAAT
ATTGAATTTTATGTTTCGCTAAATCGAATTATTCTTATTGTTTCCTCTTT
TTGTTTATAATGTGTAAATAGGGTTTTAACTAATTGAGATATTTCTCCAC
TCCATAAAggaattatgttaaaaatgttCTTCGTTGTCTGTTTTCCCTTG
TTAcacttatacagggtgtcccgaaaaaaaaagTATCcatttaacaaaat
gtaaggaAATATAATtataccaacacaataattGAAAATCATTTCCTGGC
TCGTTAAAGCACTTAGgtcatttttggcatttttttaaCCGGTTAAATCC
ATCGGGGTAGATCCGAATGGCTcgctgatacaggggtgttttaagacAAT
TCCATTCATGATATTCAGGACAACGTAAACTGATTCAATTTTCCATTCCC
GGGAAACCTTTTTCGTTACCACTTCACAGTGAAATTTGTGATATTATTGA
CATTTTTTCCGGGAATGAAAGTTTCTACGGTTTCCATAAAAGAGGATAAa
ccaatttattttttatgatcaAGTTTATATATTAAATCACTGCCGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022560-exon-sc0000427-1491911889:96515..96562 | TCONS_00022560-exon-sc0000427-1491911889:96515..96562 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1510915933:96515..96562 | TCONS_00022560-exon-sc0000427-1510915933:96515..96562 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1575043694:96515..96562 | TCONS_00022560-exon-sc0000427-1575043694:96515..96562 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1491911889:97241..97366 | TCONS_00022560-exon-sc0000427-1491911889:97241..97366 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1510915933:97241..97366 | TCONS_00022560-exon-sc0000427-1510915933:97241..97366 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1575043694:97241..97366 | TCONS_00022560-exon-sc0000427-1575043694:97241..97366 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1491911889:100652..101412 | TCONS_00022560-exon-sc0000427-1491911889:100652..101412 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1510915933:100652..101412 | TCONS_00022560-exon-sc0000427-1510915933:100652..101412 | Clytia hemisphaerica | exon |
| TCONS_00022560-exon-sc0000427-1575043694:100652..101412 | TCONS_00022560-exon-sc0000427-1575043694:100652..101412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:96515..101412 + |
Blast
The following BLAST results are available for this feature:
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