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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022561 ID=TCONS_00022561|Name=TCONS_00022561|organism=Clytia hemisphaerica|type=transcript|length=915bp
TTGTACTTCGACCTGTCATTCTCTTCAGGGTAATCAAACACTCAGAACAA
CTCAAGATGTCATCCGTTGAGAAAACTCTCCATCTTCAGAATGTCAAAAG
TCTTCGAATGCAATTGAATATGCCAAGAATGCCGGTTTCGAAAGCAGCCA
ACGAattaAAGACTTACTGCTTGCAACATGGACCTAACGACCCCCTGATC
AACAACAGCGCTCGCAAAGCAAATCCATGGGCTGAAAAATCAAAGTGTAG
TGTACTCTGACTCTTATTTAAGTTTATTACCATAAAGTACCGTACACATT
ACACTCGCCGAAAAAGACTTCGGATCGACTTTAGTATCGTTGTTTTTCCT
TTAGTACTGCTGTTAATATTGAATTTTATGTTTCGCTAAATCGAATTATT
CTTATTGTTTCCTCTTTTTGTTTATAATGTGTAAATAGGGTTTTAACTAA
TTGAGATATTTCTCCACTCCATAAAggaattatgttaaaaatgttCTTCG
TTGTCTGTTTTCCCTTGTTAcacttatacagggtgtcccgaaaaaaaaag
TATCcatttaacaaaatgtaaggaAATATAATtataccaacacaataatt
GAAAATCATTTCCTGGCTCGTTAAAGCACTTAGgtcatttttggcatttt
tttaaCCGGTTAAATCCATCGGGGTAGATCCGAATGGCTcgctgatacag
gggtgttttaagacAATTCCATTCATGATATTCAGGACAACGTAAACTGA
TTCAATTTTCCATTCCCGGGAAACCTTTTTCGTTACCACTTCACAGTGAA
ATTTGTGATATTATTGACATTTTTTCCGGGAATGAAAGTTTCTACGGTTT
CCATAAAAGAGGATAAaccaatttattttttatgatcaAGTTTATATATT
AAATCACTGCCGGCC Run BLAST on NCBI transcript from alignment at sc0000427:96760..101412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022561 ID=TCONS_00022561|Name=TCONS_00022561|organism=Clytia hemisphaerica|type=transcript|length=4653bp|location=Sequence derived from alignment at sc0000427:96760..101412+ (Clytia hemisphaerica)
TTGTACTTCGACCTGTCATTCTCTTCAGGTATAATAATgcaaatttatat
aaaaatgaacttttgatttgtgcttgcttataaaaagtttaaatttttat
atttatcataaaaatttcttctttttctttattttattcataCAAGCTCA
AAAAGCAAACAATAGAACTTCGTATAATGATAttgaacaaaatgaaaaaa
aaatattcatcttcgtttttttttgttgtgttcTTTGAGGAGAACTTTTG
GAAAGACAGTTCTCATACGCCcgcttttttttgttttgtgtgtGAAAATT
GAAGAATCAAAGGCTCTGGAGtacttcgatttgaaattaAAGAAGCGAAT
TTCTTAGTCATCAAACAGTTCTAATTTGGAAGAGGTTTACTTTCCAAATT
TCGCTTGATCGATTTTCTTGGTGATAGTCAAAGTTTCAAGAACAAAGATT
TGTTCAATTTCTGTTATTGTTTCATTTAAAGGGTAATCAAACACTCAGAA
CAACTCAAGATGTCATCCGTTGAGAAAACTCTCCATCTTCAGAATGTCAA
AAGTCTTCGAATGCAATTGAATATGCCAAGAATGCCGGTTTCGAAAGCAG
CCAACGAGTAAGTGATTATCATTATTGTATGTCACAAAACGTAAAAATAA
CATCCATTTTTGTCGTTCCCCTGCTATGtacatgttttcttttcattggG
TCTTAAAAATTAGTCCTCAAATTAATTTTAATCACCTTTTAATTGAAGTT
ttgaattaaaagaattactGCAATTACGAATGTTCTTACGAGTTCACATA
ATTTTGAGCAAGTTTGGTTaatttattcaatttaattCTGGTCATGTTCT
TacgatatttttattttccctAATTTTCCCtattcagcctaaatgttctt
ataatctGGGTTCTAATAAACAAAACACTTTAACGTCCAATGCATAATCA
TCATAGAATGTCATCAACTGACATACATAACGTCATTTTAACGTTTgatt
aacgttcatctaacgtccaTGACCACAATATCCATTTGACGTTGAAACAA
TATTGAATTCACTTACCACAGATTCCCTCAGATCACATTTTGTtagaatt
ttattgattttataaaatttcGAAATACTACGTATACGATAGCTTCATTT
Ataatagtctgaatcgcagacctctatgactctatagatatacttcctat
aagaaactattttcgctagaggatgagcagaagcctacatTTATAACACA
CTCCCTTcttacagacccactggaaaaattggccaaaatatcgtcccctg
tggaaaattatcctcaaatttttgtccactgaaaataatcaaataagcca
atcctcactacaaaatataatgtttttttttcctatcctcactgaatttt
ctgacttgaaaacaaaagaattgaaatccccagcctttaaaatatgggaa
tattaatccccatcgagtttcaggccgttatttttatcccaacttgctga
aagaatcctaccgggtctgtgagaagggggtgtattaagGTCTGGCTCAG
TTTGGCTGTAATAACTTAACTGTAAAGTGGTCCAACTTTCGGTACAAAAT
CACCGCTTTAGCTTCAACCTTACAACACACCCACTTTTAAAAACACGATT
TCGAATAATATTTCGAATGATATTAGCCTTTTTTTCGGGAAAATCACCTC
TAATTTCTCATGTAATAACAACCcaaaagaattgaagcaaagacagtcaa
agtcttcaaagaaagactcaacactgcatggagtaaacacccgaaaagat
tcaacacaagacaattgtaaaatacgttgtataatcacgatcagttccag
aggccctcgtgcgcctagaactttgttacattataataataataacccTT
CCCAATTTTATATCTGAAGTTACACACAAAACCTGAACTTTCATGAAGCA
CAGGTCTGTTGCCATGTTTTGCTTTTGAGCTACAAGCATGGACATTAAGG
tctgtagacttttcaaaaattcctcaAAGGTACCAAGAAAAGCCTTTTTG
ACACTTGGGAAATTCCCCAAATTAACCACAAGTATTTGGTATGCTAGCAG
TCCATTTGATCTTTTGACTTCCAAAGACTGAAGAAAATGACTGAacgtga
ctgaaaatgactgaaaatgggtGAACTTCAGCTACACAGGTGGTGGGTGC
ACCAGAGCTCTGAAAAGTTGTTTATAATTGATTAAACCATCTCGAATATA
GTCTAATTAGATGTCTtctcgaaaaagttgaagagcAAAACTCATTGAAC
CTTTAATCTTCAATCTCAGACCAAAAAAAGGCCtggtaaaaatgggtttt
cagagcttaattagaaatttttcatgcatttttgaaaagtctacaacctT
TAGTCCGTAATTGTATTTATTATTAGAATGATGAGCCAATCAGATGTCCT
AAAATGAAATCAAATGCAAAGGCCACAAAACATGCCAGTTAATACTTCTA
CTTTAAGAGTCACTTGTCGTAGTTGTGAGATCTCAGACATACCTCAAATA
AGGCCCTAACAGTACTACTTGACTATGAAAACAGCCTTGAATCATAGCCA
GGAACCTTGaatcatggcgttctaaatatACTAGATTTAAAACGCCATGC
CTTGAATACaagaatttcttttgtaagACAGATGAAAATATCTACTAGAG
TGATCCCACACCCTAACGAGACAGGGATGTCATTTCTAACATAACTTTTT
CATTGAATCGAGTGAGTTTCTTCTTgaattaaattttatcaaatgaacTT
TTTGCTCTAGAACTGGCCATAGTCCTCTTCAAAAACAGGCTATATATTTT
CTACGTTTACGAGTTTTTTTTTACTCGAATTTTCTCAAATGAGCTTTTGG
CTGTAAAACTGGTCAGAGCCTTCTTCAAAAACAGGTTATATATTTTCTAC
GTTGACCATAACATAAACCTTGTtacatttttggaagttttATCTTATCC
GTTATCTTGATGGCAAAGCTCTCATACAATATATACCTGGTATGATTTCT
AAAATACCGAACGTTAAAGTATtcttacataagtgttcccgtttgaTATc
aaacacatatttcatatcagggcagTATCTGCCTTTTGTTCTGATATTAT
AAGcgaaaaaatgatattttcctctttctgcccaatcttgttccacatac
aacgtgtcaatccaatgtgaaaaagcttgtgaattaaaattgatgagtaa
ggagtaagcaaacgatattactctttttaaaaacaacACCTTTAAGAGGT
GCCTCTAAATTGAATAAttcttgaatttcaaaaataccgTCCTTTCTGGT
CCGGTAACAGGGCTAAATTTGCTCATTTTAGGTTTTTTTAAAGATCTTCA
GGCTGAATATTATGGACGTTAGCTGGACTCTGACATTTAGCTACTGTCAA
AGCAAAAGGTCAAATCTCAAAAATAGATTCTGATAAATCTAAAAATGGTT
ATGCTAGACTAACCTTGAATTCTGAGATTGAACCGTTTTTCATGTAGAAA
AGAGGCTCTTCACTTTATGGAAAAAGGGTCATCTCAAAATTTAAGGTAAG
CCAAAATTCTTGTTTTACTTAAACACTAAtttgagattggaccttttgcC
TCGTTGGTTGTACCAGGcaggaattcatgatattcatgacgtaaagtttt
ctacggaaagaccccggtttttgccagtagtggcaaattttatccaattt
ttgtctagtttaaatttgccactagtggctaaaaccggggtatttctcta
gaaaacattacgtcatgaatatcatgaataagggTAATAACTTATAGAGG
tcttttcaaatatttgtttgaaattgattttttttatttcagattaAAGA
CTTACTGCTTGCAACATGGACCTAACGACCCCCTGATCAACAACAGCGCT
CGCAAAGCAAATCCATGGGCTGAAAAATCAAAGTGTAGTGTACTCTGACT
CTTATTTAAGTTTATTACCATAAAGTACCGTACACATTACACTCGCCGAA
AAAGACTTCGGATCGACTTTAGTATCGTTGTTTTTCCTTTAGTACTGCTG
TTAATATTGAATTTTATGTTTCGCTAAATCGAATTATTCTTATTGTTTCC
TCTTTTTGTTTATAATGTGTAAATAGGGTTTTAACTAATTGAGATATTTC
TCCACTCCATAAAggaattatgttaaaaatgttCTTCGTTGTCTGTTTTC
CCTTGTTAcacttatacagggtgtcccgaaaaaaaaagTATCcatttaac
aaaatgtaaggaAATATAATtataccaacacaataattGAAAATCATTTC
CTGGCTCGTTAAAGCACTTAGgtcatttttggcatttttttaaCCGGTTA
AATCCATCGGGGTAGATCCGAATGGCTcgctgatacaggggtgttttaag
acAATTCCATTCATGATATTCAGGACAACGTAAACTGATTCAATTTTCCA
TTCCCGGGAAACCTTTTTCGTTACCACTTCACAGTGAAATTTGTGATATT
ATTGACATTTTTTCCGGGAATGAAAGTTTCTACGGTTTCCATAAAAGAGG
ATAAaccaatttattttttatgatcaAGTTTATATATTAAATCACTGCCG
GCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022561-exon-sc0000427-1491911889:96760..96787 | TCONS_00022561-exon-sc0000427-1491911889:96760..96787 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1510915933:96760..96787 | TCONS_00022561-exon-sc0000427-1510915933:96760..96787 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1575043694:96760..96787 | TCONS_00022561-exon-sc0000427-1575043694:96760..96787 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1491911889:97241..97366 | TCONS_00022561-exon-sc0000427-1491911889:97241..97366 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1510915933:97241..97366 | TCONS_00022561-exon-sc0000427-1510915933:97241..97366 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1575043694:97241..97366 | TCONS_00022561-exon-sc0000427-1575043694:97241..97366 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1491911889:100652..101412 | TCONS_00022561-exon-sc0000427-1491911889:100652..101412 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1510915933:100652..101412 | TCONS_00022561-exon-sc0000427-1510915933:100652..101412 | Clytia hemisphaerica | exon |
| TCONS_00022561-exon-sc0000427-1575043694:100652..101412 | TCONS_00022561-exon-sc0000427-1575043694:100652..101412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:96760..101412 + |
Blast
The following BLAST results are available for this feature:
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