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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022562 ID=TCONS_00022562|Name=TCONS_00022562|organism=Clytia hemisphaerica|type=transcript|length=1123bp
TTTTGGAAAGACAGTTCTCATACGCCcgcttttttttgttttgtgtgtGA
AAATTGAAGAATCAAAGGCTCTGGAGtacttcgatttgaaattaAAGAAG
CGAATTTCTTAGTCATCAAACAGTTCTAATTTGGAAGAGGTTTACTTTCC
AAATTTCGCTTGATCGATTTTCTTGGTGATAGTCAAAGTTTCAAGAACAA
AGATTTGTTCAATTTCTGTTATTGTTTCATTTAAAGGGTAATCAAACACT
CAGAACAACTCAAGATGTCATCCGTTGAGAAAACTCTCCATCTTCAGAAT
GTCAAAAGTCTTCGAATGCAATTGAATATGCCAAGAATGCCGGTTTCGAA
AGCAGCCAACGAattaAAGACTTACTGCTTGCAACATGGACCTAACGACC
CCCTGATCAACAACAGCGCTCGCAAAGCAAATCCATGGGCTGAAAAATCA
AAGTGTAGTGTACTCTGACTCTTATTTAAGTTTATTACCATAAAGTACCG
TACACATTACACTCGCCGAAAAAGACTTCGGATCGACTTTAGTATCGTTG
TTTTTCCTTTAGTACTGCTGTTAATATTGAATTTTATGTTTCGCTAAATC
GAATTATTCTTATTGTTTCCTCTTTTTGTTTATAATGTGTAAATAGGGTT
TTAACTAATTGAGATATTTCTCCACTCCATAAAggaattatgttaaaaat
gttCTTCGTTGTCTGTTTTCCCTTGTTAcacttatacagggtgtcccgaa
aaaaaaagTATCcatttaacaaaatgtaaggaAATATAATtataccaaca
caataattGAAAATCATTTCCTGGCTCGTTAAAGCACTTAGgtcattttt
ggcatttttttaaCCGGTTAAATCCATCGGGGTAGATCCGAATGGCTcgc
tgatacaggggtgttttaagacAATTCCATTCATGATATTCAGGACAACG
TAAACTGATTCAATTTTCCATTCCCGGGAAACCTTTTTCGTTACCACTTC
ACAGTGAAATTTGTGATATTATTGACATTTTTTCCGGGAATGAAAGTTTC
TACGGTTTCCATAAAAGAGGATAAaccaatttattttttatgatcaAGTT
TATATATTAAATCACTGCCGGCC Run BLAST on NCBI transcript from alignment at sc0000427:97005..101412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022562 ID=TCONS_00022562|Name=TCONS_00022562|organism=Clytia hemisphaerica|type=transcript|length=4408bp|location=Sequence derived from alignment at sc0000427:97005..101412+ (Clytia hemisphaerica)
TTTTGGAAAGACAGTTCTCATACGCCcgcttttttttgttttgtgtgtGA
AAATTGAAGAATCAAAGGCTCTGGAGtacttcgatttgaaattaAAGAAG
CGAATTTCTTAGTCATCAAACAGTTCTAATTTGGAAGAGGTTTACTTTCC
AAATTTCGCTTGATCGATTTTCTTGGTGATAGTCAAAGTTTCAAGAACAA
AGATTTGTTCAATTTCTGTTATTGTTTCATTTAAAGGGTAATCAAACACT
CAGAACAACTCAAGATGTCATCCGTTGAGAAAACTCTCCATCTTCAGAAT
GTCAAAAGTCTTCGAATGCAATTGAATATGCCAAGAATGCCGGTTTCGAA
AGCAGCCAACGAGTAAGTGATTATCATTATTGTATGTCACAAAACGTAAA
AATAACATCCATTTTTGTCGTTCCCCTGCTATGtacatgttttcttttca
ttggGTCTTAAAAATTAGTCCTCAAATTAATTTTAATCACCTTTTAATTG
AAGTTttgaattaaaagaattactGCAATTACGAATGTTCTTACGAGTTC
ACATAATTTTGAGCAAGTTTGGTTaatttattcaatttaattCTGGTCAT
GTTCTTacgatatttttattttccctAATTTTCCCtattcagcctaaatg
ttcttataatctGGGTTCTAATAAACAAAACACTTTAACGTCCAATGCAT
AATCATCATAGAATGTCATCAACTGACATACATAACGTCATTTTAACGTT
TgattaacgttcatctaacgtccaTGACCACAATATCCATTTGACGTTGA
AACAATATTGAATTCACTTACCACAGATTCCCTCAGATCACATTTTGTta
gaattttattgattttataaaatttcGAAATACTACGTATACGATAGCTT
CATTTAtaatagtctgaatcgcagacctctatgactctatagatatactt
cctataagaaactattttcgctagaggatgagcagaagcctacatTTATA
ACACACTCCCTTcttacagacccactggaaaaattggccaaaatatcgtc
ccctgtggaaaattatcctcaaatttttgtccactgaaaataatcaaata
agccaatcctcactacaaaatataatgtttttttttcctatcctcactga
attttctgacttgaaaacaaaagaattgaaatccccagcctttaaaatat
gggaatattaatccccatcgagtttcaggccgttatttttatcccaactt
gctgaaagaatcctaccgggtctgtgagaagggggtgtattaagGTCTGG
CTCAGTTTGGCTGTAATAACTTAACTGTAAAGTGGTCCAACTTTCGGTAC
AAAATCACCGCTTTAGCTTCAACCTTACAACACACCCACTTTTAAAAACA
CGATTTCGAATAATATTTCGAATGATATTAGCCTTTTTTTCGGGAAAATC
ACCTCTAATTTCTCATGTAATAACAACCcaaaagaattgaagcaaagaca
gtcaaagtcttcaaagaaagactcaacactgcatggagtaaacacccgaa
aagattcaacacaagacaattgtaaaatacgttgtataatcacgatcagt
tccagaggccctcgtgcgcctagaactttgttacattataataataataa
cccTTCCCAATTTTATATCTGAAGTTACACACAAAACCTGAACTTTCATG
AAGCACAGGTCTGTTGCCATGTTTTGCTTTTGAGCTACAAGCATGGACAT
TAAGGtctgtagacttttcaaaaattcctcaAAGGTACCAAGAAAAGCCT
TTTTGACACTTGGGAAATTCCCCAAATTAACCACAAGTATTTGGTATGCT
AGCAGTCCATTTGATCTTTTGACTTCCAAAGACTGAAGAAAATGACTGAa
cgtgactgaaaatgactgaaaatgggtGAACTTCAGCTACACAGGTGGTG
GGTGCACCAGAGCTCTGAAAAGTTGTTTATAATTGATTAAACCATCTCGA
ATATAGTCTAATTAGATGTCTtctcgaaaaagttgaagagcAAAACTCAT
TGAACCTTTAATCTTCAATCTCAGACCAAAAAAAGGCCtggtaaaaatgg
gttttcagagcttaattagaaatttttcatgcatttttgaaaagtctaca
acctTTAGTCCGTAATTGTATTTATTATTAGAATGATGAGCCAATCAGAT
GTCCTAAAATGAAATCAAATGCAAAGGCCACAAAACATGCCAGTTAATAC
TTCTACTTTAAGAGTCACTTGTCGTAGTTGTGAGATCTCAGACATACCTC
AAATAAGGCCCTAACAGTACTACTTGACTATGAAAACAGCCTTGAATCAT
AGCCAGGAACCTTGaatcatggcgttctaaatatACTAGATTTAAAACGC
CATGCCTTGAATACaagaatttcttttgtaagACAGATGAAAATATCTAC
TAGAGTGATCCCACACCCTAACGAGACAGGGATGTCATTTCTAACATAAC
TTTTTCATTGAATCGAGTGAGTTTCTTCTTgaattaaattttatcaaatg
aacTTTTTGCTCTAGAACTGGCCATAGTCCTCTTCAAAAACAGGCTATAT
ATTTTCTACGTTTACGAGTTTTTTTTTACTCGAATTTTCTCAAATGAGCT
TTTGGCTGTAAAACTGGTCAGAGCCTTCTTCAAAAACAGGTTATATATTT
TCTACGTTGACCATAACATAAACCTTGTtacatttttggaagttttATCT
TATCCGTTATCTTGATGGCAAAGCTCTCATACAATATATACCTGGTATGA
TTTCTAAAATACCGAACGTTAAAGTATtcttacataagtgttcccgtttg
aTATcaaacacatatttcatatcagggcagTATCTGCCTTTTGTTCTGAT
ATTATAAGcgaaaaaatgatattttcctctttctgcccaatcttgttcca
catacaacgtgtcaatccaatgtgaaaaagcttgtgaattaaaattgatg
agtaaggagtaagcaaacgatattactctttttaaaaacaacACCTTTAA
GAGGTGCCTCTAAATTGAATAAttcttgaatttcaaaaataccgTCCTTT
CTGGTCCGGTAACAGGGCTAAATTTGCTCATTTTAGGTTTTTTTAAAGAT
CTTCAGGCTGAATATTATGGACGTTAGCTGGACTCTGACATTTAGCTACT
GTCAAAGCAAAAGGTCAAATCTCAAAAATAGATTCTGATAAATCTAAAAA
TGGTTATGCTAGACTAACCTTGAATTCTGAGATTGAACCGTTTTTCATGT
AGAAAAGAGGCTCTTCACTTTATGGAAAAAGGGTCATCTCAAAATTTAAG
GTAAGCCAAAATTCTTGTTTTACTTAAACACTAAtttgagattggacctt
ttgcCTCGTTGGTTGTACCAGGcaggaattcatgatattcatgacgtaaa
gttttctacggaaagaccccggtttttgccagtagtggcaaattttatcc
aatttttgtctagtttaaatttgccactagtggctaaaaccggggtattt
ctctagaaaacattacgtcatgaatatcatgaataagggTAATAACTTAT
AGAGGtcttttcaaatatttgtttgaaattgattttttttatttcagatt
aAAGACTTACTGCTTGCAACATGGACCTAACGACCCCCTGATCAACAACA
GCGCTCGCAAAGCAAATCCATGGGCTGAAAAATCAAAGTGTAGTGTACTC
TGACTCTTATTTAAGTTTATTACCATAAAGTACCGTACACATTACACTCG
CCGAAAAAGACTTCGGATCGACTTTAGTATCGTTGTTTTTCCTTTAGTAC
TGCTGTTAATATTGAATTTTATGTTTCGCTAAATCGAATTATTCTTATTG
TTTCCTCTTTTTGTTTATAATGTGTAAATAGGGTTTTAACTAATTGAGAT
ATTTCTCCACTCCATAAAggaattatgttaaaaatgttCTTCGTTGTCTG
TTTTCCCTTGTTAcacttatacagggtgtcccgaaaaaaaaagTATCcat
ttaacaaaatgtaaggaAATATAATtataccaacacaataattGAAAATC
ATTTCCTGGCTCGTTAAAGCACTTAGgtcatttttggcatttttttaaCC
GGTTAAATCCATCGGGGTAGATCCGAATGGCTcgctgatacaggggtgtt
ttaagacAATTCCATTCATGATATTCAGGACAACGTAAACTGATTCAATT
TTCCATTCCCGGGAAACCTTTTTCGTTACCACTTCACAGTGAAATTTGTG
ATATTATTGACATTTTTTCCGGGAATGAAAGTTTCTACGGTTTCCATAAA
AGAGGATAAaccaatttattttttatgatcaAGTTTATATATTAAATCAC
TGCCGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022562-exon-sc0000427-1491911889:97005..97366 | TCONS_00022562-exon-sc0000427-1491911889:97005..97366 | Clytia hemisphaerica | exon |
| TCONS_00022562-exon-sc0000427-1510915933:97005..97366 | TCONS_00022562-exon-sc0000427-1510915933:97005..97366 | Clytia hemisphaerica | exon |
| TCONS_00022562-exon-sc0000427-1575043694:97005..97366 | TCONS_00022562-exon-sc0000427-1575043694:97005..97366 | Clytia hemisphaerica | exon |
| TCONS_00022562-exon-sc0000427-1491911889:100652..101412 | TCONS_00022562-exon-sc0000427-1491911889:100652..101412 | Clytia hemisphaerica | exon |
| TCONS_00022562-exon-sc0000427-1510915933:100652..101412 | TCONS_00022562-exon-sc0000427-1510915933:100652..101412 | Clytia hemisphaerica | exon |
| TCONS_00022562-exon-sc0000427-1575043694:100652..101412 | TCONS_00022562-exon-sc0000427-1575043694:100652..101412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:97005..101412 + |
Blast
The following BLAST results are available for this feature:
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