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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022564 ID=TCONS_00022564|Name=TCONS_00022564|organism=Clytia hemisphaerica|type=transcript|length=4634bpRun BLAST on NCBI protein sequence of TCONS_00022564-protein >TCONS_00022564-protein ID=TCONS_00022564-protein|Name=TCONS_00022564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp MSYRDIRNFTEMMRALGYPRLISMENFRNPNFSLVAEILKWLVLRYDPNTRun BLAST on NCBI transcript from alignment at sc0000427:146029..160961+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022564 ID=TCONS_00022564|Name=TCONS_00022564|organism=Clytia hemisphaerica|type=transcript|length=14933bp|location=Sequence derived from alignment at sc0000427:146029..160961+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000427:146029..160961+ >TCONS_00022564 ID=TCONS_00022564|Name=TCONS_00022564|organism=Clytia hemisphaerica|type=CDS|length=14400bp|location=Sequence derived from alignment at sc0000427:146029..160961+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022564 vs. Swiss-Prot (Human)
Match: CLUA1 (Clusterin-associated protein 1 OS=Homo sapiens GN=CLUAP1 PE=1 SV=4) HSP 1 Score: 364.77 bits (935), Expect = 1.269e-112 Identity = 183/292 (62.67%), Postives = 232/292 (79.45%), Query Frame = 3
Query: 2658 MSYRDIRNFTEMMRALGYPRLISMENFRNPNFSLVAEILKWLVLRYDPNTDIPMDVDTENDRVLFIKSVAQFMMTKAHIKLNTKKLYGADGLAVKELLKVTTVLYDATQKSKKSDEDEMAASYLPR-KVDFNSKISELKMARQLASEITVKGSTLHQLLGREVDLREIRTASVARPLDLNEIEKNIENAVNEAQSDLDKTRNQLDNIASDEANLGAKIEKRTAELERNQKRLKNLESVRPAFMDEYEGLEKDLETLYKTYIEKYRNLTYLEQQHEIMNKTELDKFNDSDNPL 3530
MS+RD+RNFTEMMRALGYPR ISMENFR PNF LV+E+L WLV RY+P TDIP DVDTE DRV FIK++AQFM TKAHIKLNTKKLY ADG AVKELLK+T+VLY+A K+K + E+ + + K D SKI++LK ARQLASEIT KG++L+ LLG EV+LRE+RT ++ARPL++NE EK + A+ E + + KT++ L+N+ASDEANL AKIEKR ELERN+KRL+ L+SVRP FMDEYE E++L+ Y TY+EK++NLTYLEQQ E ++ E ++F ++ N L
Sbjct: 1 MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRYEPQTDIPPDVDTEQDRVFFIKAIAQFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAM-KTKGMEGSEIVEEDVNKFKFDLGSKIADLKAARQLASEITSKGASLYDLLGMEVELREMRTEAIARPLEINETEKVMRIAIKEILTQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTL 291 The following BLAST results are available for this feature:
BLAST of TCONS_00022564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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