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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022566 ID=TCONS_00022566|Name=TCONS_00022566|organism=Clytia hemisphaerica|type=transcript|length=2957bpRun BLAST on NCBI protein sequence of TCONS_00022566-protein >TCONS_00022566-protein ID=TCONS_00022566-protein|Name=TCONS_00022566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp MSINTVIEYSLVVEPDKDLDRLHKECLGCISTDIQEYLWHKEEFCLNATLRun BLAST on NCBI transcript from alignment at sc0000427:193889..216781+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022566 ID=TCONS_00022566|Name=TCONS_00022566|organism=Clytia hemisphaerica|type=transcript|length=22893bp|location=Sequence derived from alignment at sc0000427:193889..216781+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000427:193889..216781+ >TCONS_00022566 ID=TCONS_00022566|Name=TCONS_00022566|organism=Clytia hemisphaerica|type=CDS|length=29232bp|location=Sequence derived from alignment at sc0000427:193889..216781+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022566 vs. Swiss-Prot (Human)
Match: ECD (Protein ecdysoneless homolog OS=Homo sapiens GN=ECD PE=1 SV=1) HSP 1 Score: 375.17 bits (962), Expect = 1.969e-116 Identity = 233/652 (35.74%), Postives = 355/652 (54.45%), Query Frame = 2
Query: 185 KSARIMSINTVIEYSLVVEPD--KDLDRLHKECL--------GCISTDIQEYLWHKEEFCLNATLDFDNSGLAA-LYGSTDVGENINDEWFIVHLLFKLSKKFPRCIIQVTDTDDNFLLIEAAEYLPRWLKPETSDNRVFIYNGNLHLIPFPSNPSEVTIYPTGKPTLQQAFKILTNDDEAKTCACPKIQECLNARIKDYPSKIQKDFHHAHCYLPLELIYMLHKQPALVAAAVEAFYNRDHIDIKTCKSLPSFTPNKQALSRVKFTKHLYCQLAQARFVPERRSPWQLPTTNDTTYKSKELGYKLACGFEILLSR----YQMSQKDGQPHGKQWQSFLENLKKNDFFQGEMEGSKKYKEFMSRAKEHFKEHIKINIDSF----GKDLLKLYEEVGHNEPMVKNLASKLLPEDDDSWMTVTPEELDQMMLGAWGRESTN--QKHGKNDVENLSHLVDNMKLFVDKVSSYEGVETPQEVDVNQDSGRAGAPSIDDEIQFDPKAFMENISNLLSPPSQYASEKVKEGFQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGFYDVIGSMDDELKGTSIPRSF---------------QSQEGEEG--------LNYDVNLIRNFLESFQSQDGLAGPVSNILQSMGMSLPPNED 2008
++ ++ ++ +EY L + PD +D D+ HKE L + + Y+W + F N G+ A ++G T G+NI DEWFIV+++ +++K+FP + ++ D D FLLIEAA++LP+WL PE S NRVF +G L +IP P + PT PT+ QA I+T E K A I+ +N RI+ YP KIQ H AHC+LP ++ +L ++P LVAAAV+AFY RD ID++ C+ +F P + ++ V FTK LY QL Q RFVP+RRS ++LP +D Y++ ELG KLA GFEIL S+ + +K W SFLE+LKKND+F+G +EGS +Y+E + A+ +F+ + S G+++L L + + + +K A+ L PEDDD W+ ++P++LDQ++ A G++ + K K +L+ + ++MK F+ KVS+++G E P+E PS + I FD +F+ +L P + + F D D D ++ K + + + + MD EL T I +SF S E + G ++ D+NL+ N LES+ SQ GLAGP SN+LQSMG+ LP N D
Sbjct: 3 ETMKLATMEDTVEYCLFLIPDESRDSDK-HKEILQKYIERIITRFAPMLVPYIWQNQPF--NLKYKPGKGGVPAHMFGVTKFGDNIEDEWFIVYVIKQITKEFPELVARIEDNDGEFLLIEAADFLPKWLDPENSTNRVFFCHGELCIIPAPRKSGAESWLPTTPPTIPQALNIITAHSE-KILASESIRAAVNRRIRGYPEKIQASLHRAHCFLPAGIVAVLKQRPRLVAAAVQAFYLRDPIDLRACRVFKTFLPETRIMTSVTFTKCLYAQLVQQRFVPDRRSGYRLPPPSDPQYRAHELGMKLAHGFEILCSKCSPHFSDCKKSLVTASPLWASFLESLKKNDYFKGLIEGSAQYRERLEMAENYFQLSVDWPESSLAMSPGEEILTLLQTIPFDIEDLKKEAANLPPEDDDQWLDLSPDQLDQLLQEAVGKKESESVSKEEKEQNYDLTEVSESMKAFISKVSTHKGAELPRE------------PS-EAPITFDADSFLNYFDKILGPRPNESDSDDLDDEDFECLDSDDDLDFETHEPGEEASLKGTLDNLKSY---MAQMDQELAHTCISKSFTTRNQVEPVSQTTDNNSDEEDSGTGESVMAPVDVDLNLVSNILESYSSQAGLAGPASNLLQSMGVQLPDNTD 634 The following BLAST results are available for this feature:
BLAST of TCONS_00022566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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