TCONS_00022569 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022569
Unique Name	TCONS_00022569
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3621

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000427:245027..251251+

transcript sequence

>TCONS_00022569 ID=TCONS_00022569|Name=TCONS_00022569|organism=Clytia hemisphaerica|type=transcript|length=3621bp
tagacACAAAACTACTAAAAAAATGATTCATTAGATTTTTAATAATATTA
TACAAAGGATGTTGGTGATGTGGAACTTTGTTGTTTATCATTTCAACCGA
TTGTATAGAAGATTTCCTGTCAAGAAGTTTGTTATTTTTGCTGTCTGTAT
ATTACTTGGGTATAAGATTGTGACTAAATCATATCATAGATACACACATA
ATGTATGGGTAGAAGAAAGAAAGACTCTTATTGAACGATATGAAGCAGAT
AAGAGCAATTTTGTGAATCAAAATGCAGCGTGTGCCATTCCAAGGTTGAA
TCCTTTCAGTAAAGAAGTTATTCATATGATGCACAAGACTTGGGAGAAAT
GTTCTCTCGTTGAATATGGTCAAATCGAGGACGGAGTATTTGTGGTAGAT
GGGAAAAAGAATCCCTTCATCCTTACCGTATACATCCAGTACATCAGACG
TGCTCCGAAGAGAGGGGAGATCAGTAACGATTTTGCTGTCTCTTActctg
aaaaaattttcttgaaaaaagaaaatgGGAAATTTTCACTGACATTGACA
GAGGATCACATCAGAGTAGGAATGGTCATCGATAAAACAAGAAATCAACT
TCATGTCGAGTTCCAATCCCACGTGACAAAAACACCAGGACGCTTAAATC
ATTTGAAGAAATTGAAAGAAATGGCATCTGGGCTGAAAATGAACGTAGCC
ATCCAGATGTTCGATTCTCAATCGAACGCCAACATTCGTCGACAAGCTGT
GCGAACGATCCAATACTTAGAACAAGACGAACATTCATTTATTTTCAACG
CGAATAGTATCGTTGGGGACGGAACGACCGCTCAAGTATCTGCTATGTTG
ACAGGAATCGCGGAAGAAGATCAGTACGAGACGCGGCGTGGATTTCCCAA
CACGCGAACTGTTGACGATTTCACGTGGATATTCGAAGATTTTTCGAACG
CCGGTTACGCGACTGTTTACACGGAAGAAGATACTCGATATGGGACGTTT
AATTATCGTTTAAACGGCTTTAAAGAACCTCCGACTCTTTGGTATCCAAA
GCCTACGTGGTTAAGTTGGGACGCGATTTATCTCAGACATTCCTTATGCT
CGGCTGAGAAGAATATGgcttatttgaaatatttcgatCAGATGTTTGAC
GGCGTTGGTAAGTTCGCTTTCGCTTTGACCGCTTATTTGACTCATGATAG
CTTAGATGCCATGCAGAGCATTGATCAATCGATTGTAGAGTTGATACAGT
ATTATAAGAATGAGGGAAATACTATGTTTGTACTGTTCGGAGATCACGGA
TCGAGAACAGGTGGTGTCCGTGATTCGCTTCAAGGGAAACTGGAAGAGAG
ACTACCCTTCTTGTCTATCACGATGCCAAAATGGTTTCGTAAAAAGCATC
CAgatttttacaaagctatgggtGAGAATACGAACGTTTTAACGTCTTAT
TTTGATGTTTACGCCACGTACCGCCATATTTTGTCGTACCCAGTTCTCCC
TACTGATGTTTTCGGACAgagtttgtttacaaaattaCCTCTCAATCGAA
CGTGTGGTGACGTTGGTGTTAAAGAACACTGGTGCGCATGCTTGGATTAC
AAAGACATTTCTGTCAATGACCCATCAGTGAAATTAGTGGCTGGCGAAGT
TGTGAAATATATGAACAGCTTGCTGGTTGGATTGAATAATGAGCGTAAAA
CGTGTGCTCAAATGTCTCTCGATAAGATCATACACGCTGGTGTGAGGAAA
CCAAAGGAGGTTGTACAGAAGTTTAAGAATACAAAACGCAATGAGAAATG
TGATTCTTGTGCTATTGATCTAGACCAAAGCATGGAGACTGATCAAGTTT
CTATTCGAAGTTTCGAAATTGTCTTGACTGTTCAGCCTAGTGGTGGGAAA
TTTGAAGTCAATGCGAAGCTGGGGCTAGATAATGTAGTGACTGTTGACCC
GCAGATAAGTAGAATTAATATGTATGGTGATCAACCAAAATGCATTGCGA
CAATTTATCCTCATTTAAGACCGTTTTGTTATTGTGTTTAGTATATACTT
ctgttgaaattaaacaaattaTATTAGAGAAATTATATTAAGGTTATAAT
AGATTATCATATAAATCGCTAGATATATATAACACTAGAGGGTTTAATAT
AAAATTGGATTATATAAATTGAGAttacattatatatttttactgATAGT
TTACTAGTGATCTCTAGACATTTCGCATTTAAAGGGGTATAGTGAATTCT
TTGATAGGCAATGAGAAAAGCATATTCTGTTGAAACCGTCATATTTCCCC
TTGGAAACATCTGAAAAAGCCGGAAACATGGGCCAAGATTCGTTGTTTTG
GGTGTTTCCGAGAGGAAAAATTAGATGACGTAACTTTAAAGTTTTTTCCT
GTGTTTCATATATCAAGAATGTCATTTACTCTCTGTTTGATCCGAAAAAA
TAACATTTCGGCGCCAATTTTCAGGCAAGACACTGTATCAATCCCTGAAC
TTTGaccaaatattgaaaatgaaataagctctttttctgaaaattctgCT
ACAATTACTATTTTCAAATTAGCTCTCAAAACATTATCATTTCGATAGAG
ATTTTTAGTACAAAGATACAACTTTATGCTTGTGTTGTTATTACTATAct
aaatgattttaaaaaggCAACCTGATTTTGTGTTATTAACTATTAACTAA
TCCTTTTCCAAGGTTTACTCTTTTTCCACTGACATGATGTTATATTGATA
CAGACTTGAGCCtcgttttcagtttttttttgctgtCAAGATATAATTAT
TCCTAGCCCTGACTGGCAATCACATTAAGTTAAATTCTACTTATTACTTC
ACACTATTAGATATCCAGGAGCAAAAGAACTTCATTTCATCAATATCAAA
TTAAATGGATAAATGGTTTTGATCTCGAATGTTACGGATCTTACTTATTT
TGACTTTGCTGTACATCTTTTACGAAGCTAATAGGTAGAATAGGAGCATG
AATTCGTTTGGGGGATATCAACAGCCTTATGGGTATTTTTACTATGCATT
CCATAGCATTAATATATTTTAGGtagaacatttttatttttttatttcca
ttatttttagttCCATATTTTATACAATTGGCATTTTATTTCTTGGCATA
CATTTATATGACCTATTTCAATAGAAGCAAAATAATAGGAGACCTTATGA
CAATTATTTtctgttaaaaaaaatcatagctgaggcgaaaataaaaaaat
gtagtgtttccagaAACCGGccggatgaaaaaaaaaatttctgacccggc
cgcagactcgTTAGTAGTTAtaatacatttttatttttttatttccatta
tttttagttCCATATTTTATACATTTGCATTTCTTGGCATACATTTATAT
GACCTATTTCAATAGAAGCAAAATAATAGGAGACCTTATGACAGTTATtt
tctgttaaaaaaaaatcatagctaaggcgaaaataaaaaaatgtagtgtt
tccagaAACCGGCcggatgaaaaagaaaatttttctgacccggccgcaga
ctcgTTAGTAGTTAtaatacattagtattcagggcttacttcatactgtt
tgtacataaaagttatcttta

Run BLAST on NCBI

transcript from alignment at sc0000427:245027..251251+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022569 ID=TCONS_00022569|Name=TCONS_00022569|organism=Clytia hemisphaerica|type=transcript|length=6225bp|location=Sequence derived from alignment at sc0000427:245027..251251+ (Clytia hemisphaerica)
tagacACAAAACTACTAAAAAAATGATTCATTAGATTTTTAATAATATTA
TACAAAGGATGTTGGTGATGTGGAACTTTGTTGTTTATCATTTCAACCGA
TTGTATAGAAGATTTCCTGTCAAGAAGTTTGTTATTTTTGCTGTCTGTAT
ATTACTTGGGTATAAGATTGTGACTAAATCATATCATAGATACACACATA
ATGTATGGGTAGAAGAAAGAAAGACTCTTATTGAACGGTAAGTTTAAGAC
ACCTTTTCTTCCTTTTGGAATGTCCGGATCCACCATTCTCATTGGACTAT
gccaattttttacaattttgatataaattatataaataaaatGGTTCATA
CCATGGTATACCATCATGGCTTAGTCATTgtgtgattttggaaaaatcca
TACCGAAATTCCCAAATGTGAAATACTTATCCCGAGACTTCAAAGCTCTT
AAAAAAtcacaaactgaaaattttaaaaatcacacgCCGACAGAAAATTT
CTGTGCGGTTACAGTATGATGGTTTTTACACGCGTGTGCTTTTTTAATTG
GTTTATACATTTTATTCTTGGATTAAATTACCTCTAGTGGAGGGAAACTT
TAGAGAATTTTCTTTTACATTGTGAATTGACATTGCATTATGGATCTTGT
TCTACCCGCCACATTGAAtaattatttcttattttctgACTGCCCCGAAG
GGTGCAAAGTACAGCATAGTACTTGAAATTTTGTTCGGTatgaaaaaata
tgttccacgcagaaatttgttttaaatttaatcaatGCCGCTTTCGTAAA
GCATTGAAGTATTCAgtaatttgatcaattattttTAGATATGAAGCAGA
TAAGAGCAATTTTGTGAATCAAAATGCAGCGTGTGCCATTCCAAGGTTGA
ATCCTTTCAGTAAAGAAGTTATTCATATGATGCACAAGACTTGGGAGAAA
TGTTCTCTCGTTGAATATGGTGAGCATAAAATATCATCTACAGTGGAGGT
TCCAGAACtcaacacgcacggggaacacaaatttgtttttccatCATAGA
AATCGTATAATCATAAATGGCTTCCCCAAAATAAAATAGGGTTCTTCCGC
CCTGTTCCGCCTAAAAACAAAGTGTTAAAAACAGTTAAACAAATGAAAAG
TTCAAATAATAAGTTAATTTTTAGAATATAAAAGTTTGTTTCAGTTagtg
aaatttcaagttatagagtaaggtttataaggtattgttaactgaaggga
ccataaaacttgttcaagttgggatgagctggagtttttttaagatactt
caataattggtcatttgaagtgatagagatgacgcgttctttagaaaaag
aatgagattgtttttattacatcttaacgaccaaccaaatcacataagag
cttgtaaaaactccagcttgtcccttcAAGTTAAGGATACATTCGAGATT
TAGATTTTCGAGTTGTATTATATTTTGATAGAATAATGGAATCTTACGGC
AATTTAAATTCACGGAGATGATACCTTCATTATTTTGTGTCTCTTTATTA
ATGCCTAACTATGTGTGTTTGCCACTAAATTATCAGCTcgcttgaatatt
tttcaatatcaaaTTTTTCGTGTGAGAATGAGGTCGTTTAAAATTCATGC
GTTACAGTAATGATGGTGCTATGTAGTAACACAATAATCGTAAGGGGACA
ATATCAGtttatttccattattttttgcttgttttgccttgtctgaatta
gtcgtctatcTGTATATTCGCGCTGAATACCTAAACCCAATAAGACAGTT
ATATTTACCGGATATTATTGTGTGGATATTACACTAAATTAAATTCTTAT
GATAAAATTATTACCTTCTAGGTCAAATCGAGGACGGAGTATTTGTGGTA
GATGGGAAAAAGAATCCCTTCATCCTTACCGTATACATCCAGTACATCAG
ACGTGCTCCGAAGAGAGGGGAGATCAGTAACGATTTTGCTGTCTCTTAct
ctgaaaaaattttcttgaaaaaagaaaatggtaGGTTCGAAGATTTTCTT
TATAGTAGGGCCTCTCTCTTCTGTTCTGGTGCTTTCATATAGAAATTCAT
TTTAATTAGGGTCAGATTTCTCGTATTTTGACCAACATAATTACTATATT
AACACAAAGCCCATATTGTTTGAATCTTTTCAGCATTTCCCTCTGTTTCA
GGCGTCTCTTACTCTACAGTAGCTTTGATTACAATTGATAGGGATTTTCG
CGCCTGTTCCGTGAAAGCTACTTTTTTTGATATACTGTATATTAATAGTT
GTTTATATGCCagtgtaaattttttattttctgtcaTTCCTTTAAACAGG
GAAATTTTCACTGACATTGACAGAGGATCACATCAGAGTAGGAATGGTCA
TCGATAAAACAAGAAATCAACTTCATGTCGAGTTCCAATCCCACGTGACA
AAAACACCAGGACGCTTAAATCATTTGAAGAAATTGAAAGGTAAAGGGTG
TTCGTTTTTACCGAGTTGTTGCTAAAATTTAACACTCCAATTTATGgcac
aattttttaaatcactttttttataaggactttCATGTCTGGTATTTTTA
AGCAGAGATTCAGACCTCGCTAAGACACCGTTGAACAGGCTTCAACGTAG
TTTTCTTCTGATCAGATTTTTCTCCAGTCCACAAGCTACAAATCAACGCT
AGGTTTCCGATCCATTTTGTGCCGAAATTTGATTGAACGTATTGTCTTCA
AAGACTTTCTTTTCGCTACCAGGCCTTTTTTTTAAAAGGAGCTTTGAATT
AAGATTCATTCTGAGAAAACTACAAACGTTACGAATCAAAACTTTCAGGG
CTGAAAGAGGGAAGacaaacttgaattttgagccaTCATATAATAAATTT
AATGTGCTTAAACTTtgtgaaaaaagggaaaaagaaaATGTCTCTTTGAG
GATCTTTTCGCATCATTGTAAACCTTCAATTCAGAATACAAGACTTCCCC
TCTCATAGAAATGGCATCTGGGCTGAAAATGAACGTAGCCATCCAGATGT
TCGATTCTCAATCGAACGCCAACATTCGTCGACAAGCTGTGCGAACGATC
CAATACTTAGAACAAGACGAACATTCATTTATTTTCAACGCGAATAGTAT
CGTTGGGGACGGAACGACCGCTCAAGTATCTGCTATGTTGACAGGTATAC
TTTTgatcaaaatattgtttttgaaCCATATGAAATTTTACCATTCATAA
GAAAAAGAGTCTTGCCGAATAAATTTAATTAATAAGATTAATTCACCACG
TTAATAGTTTGacaaaaaaaggtctatagaaaGCATCATTTTTATACATA
TCAATGTTCGTTTTGATACAATTACTAAATTCTAAAACGAGATCCGCGAT
GGCAGTTGGCATCTTTTCAAGAAGAATGTGTTCCTAGTATTACTGTTCTT
TCGCTCAGGAATCGCGGAAGAAGATCAGTACGAGACGCGGCGTGGATTTC
CCAACACGCGAACTGTTGACGATTTCACGTGGATATTCGAAGATTTTTCG
AACGCCGGTTACGCGACTGTTTACACGGAAGAAGATACTCGATATGGGAC
GTTTAATTATCGTTTAAACGGCTTTAAAGAACCTCCGACTCTTTGGTATC
CAAAGCCTACGTGGTTAAGTTGGGACGCGATTTATCTCAGACATTCCTTA
TGCTCGGCTGAGAAGAATATGgcttatttgaaatatttcgatCAGATGTT
TGACGGCGTTGGTAAGTTCGCTTTCGCTTTGACCGCTTATTTGACTCATG
ATAGCTTAGATGCCATGCAGAGCATTGATCAATCGATTGTAGAGTTGATA
CAGTATTATAAGAATGAGGGAAATACTATGTTTGTACTGTTCGGAGATCA
CGGATCGAGAACAGGTGGTGTCCGTGATTCGCTTCAAGGGAAACTGGAAG
AGAGACTACCCTTCTTGTCTATCACGATGCCAAAATGGTTTCGTAAAAAG
CATCCAgatttttacaaagctatgggtGAGAATACGAACGTTTTAACGTC
TTATTTTGATGTTTACGCCACGTACCGCCATATTTTGTCGTACCCAGTTC
TCCCTACTGATGTTTTCGGACAgagtttgtttacaaaattaCCTCTCAAT
CGAACGTGTGGTGACGTTGGTGTTAAAGAACACTGGTGCGCATGCTTGGA
TTACAAAGACATTTCTGTCAATGACCCATCAGTGAAATTAGTGGCTGGCG
AAGTTGTGAAATATATGAACAGCTTGCTGGTTGGATTGAATAATGAGCGT
AAAACGTGTGCTCAAATGTCTCTCGATAAGATCATACACGCTGGTGTGAG
GAAACCAAAGGAGGTTGTACAGAAGTTTAAGAATACAAAACGCAATGAGA
AATGTGATTCTTGTGCTATTGATCTAGACCAAAGCATGGAGACTGATCAA
GTTTCTATTCGAAGTTTCGAAATTGTCTTGACTGTTCAGCCTAGTGGTGG
GAAATTTGAAGTCAATGCGAAGCTGGGGCTAGATAATGTAGTGACTGTTG
ACCCGCAGATAAGTAGAATTAATATGTATGGTGATCAACCAAAATGCATT
GCGACAATTTATCCTCATTTAAGACCGTTTTGTTATTGTGTTTAGTATAT
ACTTctgttgaaattaaacaaattaTATTAGAGAAATTATATTAAGGTTA
TAATAGATTATCATATAAATCGCTAGATATATATAACACTAGAGGGTTTA
ATATAAAATTGGATTATATAAATTGAGAttacattatatatttttactgA
TAGTTTACTAGTGATCTCTAGACATTTCGCATTTAAAGGGGTATAGTGAA
TTCTTTGATAGGCAATGAGAAAAGCATATTCTGTTGAAACCGTCATATTT
CCCCTTGGAAACATCTGAAAAAGCCGGAAACATGGGCCAAGATTCGTTGT
TTTGGGTGTTTCCGAGAGGAAAAATTAGATGACGTAACTTTAAAGTTTTT
TCCTGTGTTTCATATATCAAGAATGTCATTTACTCTCTGTTTGATCCGAA
AAAATAACATTTCGGCGCCAATTTTCAGGCAAGACACTGTATCAATCCCT
GAACTTTGaccaaatattgaaaatgaaataagctctttttctgaaaattc
tgCTACAATTACTATTTTCAAATTAGCTCTCAAAACATTATCATTTCGAT
AGAGATTTTTAGTACAAAGATACAACTTTATGCTTGTGTTGTTATTACTA
TActaaatgattttaaaaaggCAACCTGATTTTGTGTTATTAACTATTAA
CTAATCCTTTTCCAAGGTTTACTCTTTTTCCACTGACATGATGTTATATT
GATACAGACTTGAGCCtcgttttcagtttttttttgctgtCAAGATATAA
TTATTCCTAGCCCTGACTGGCAATCACATTAAGTTAAATTCTACTTATTA
CTTCACACTATTAGATATCCAGGAGCAAAAGAACTTCATTTCATCAATAT
CAAATTAAATGGATAAATGGTTTTGATCTCGAATGTTACGGATCTTACTT
ATTTTGACTTTGCTGTACATCTTTTACGAAGCTAATAGGTAGAATAGGAG
CATGAATTCGTTTGGGGGATATCAACAGCCTTATGGGTATTTTTACTATG
CATTCCATAGCATTAATATATTTTAGGtagaacatttttatttttttatt
tccattatttttagttCCATATTTTATACAATTGGCATTTTATTTCTTGG
CATACATTTATATGACCTATTTCAATAGAAGCAAAATAATAGGAGACCTT
ATGACAATTATTTtctgttaaaaaaaatcatagctgaggcgaaaataaaa
aaatgtagtgtttccagaAACCGGccggatgaaaaaaaaaatttctgacc
cggccgcagactcgTTAGTAGTTAtaatacatttttatttttttatttcc
attatttttagttCCATATTTTATACATTTGCATTTCTTGGCATACATTT
ATATGACCTATTTCAATAGAAGCAAAATAATAGGAGACCTTATGACAGTT
ATtttctgttaaaaaaaaatcatagctaaggcgaaaataaaaaaatgtag
tgtttccagaAACCGGCcggatgaaaaagaaaatttttctgacccggccg
cagactcgTTAGTAGTTAtaatacattagtattcagggcttacttcatac
tgtttgtacataaaagttatcttta

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012657	XLOC_012657	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000427	supercontig	sc0000427:245027..251251 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.146296	0.282015	0.476321	0.693776	0.756422	1.36211	1.62257	1.51903	1.06351	1.31733	1.00501	0.74713	0.65283	0.0968529	0.398131	0.598158	0.631613	0.431589	0	0.623946	1.35581	1.38876	1.76861	1.60793	0.903341	0.54198	0.384561	0.820829	1.24514	1.2686

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00022569 vs. Swiss-Prot (Human)

BLAST of TCONS_00022569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00022569 (transcript) - C. hemisphaerica