TCONS_00022581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022581
Unique NameTCONS_00022581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022581 ID=TCONS_00022581|Name=TCONS_00022581|organism=Clytia hemisphaerica|type=transcript|length=276bp
TAAGNTGTAACATCCAATAGCGTCATCATAATTTCTGGCTGCGAACAAGC
GGTTACCTTGTTCTTTCAATTCTGCAGCACTGGTTCGACtcattgttttt
gtatttttacttCATTTGGCTTATAGGTCTGATATCTTATATCTAGTTCA
CACCATCTTTGTAGTGTTTTGTATTTcattcatttctttttttttgttaa
actaTGTGAAAGAAACAAATATATAATAaagtttaaaacttttaaaattg
taaagAACAGTACATTGCATCTCTTG
Run BLAST on NCBI

transcript from alignment at sc0000427:88426..88701

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022581 ID=TCONS_00022581|Name=TCONS_00022581|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0000427:88426..88701 (Clytia hemisphaerica)
CAAGAGATGCAATGTACTGTTctttacaattttaaaagttttaaacttTA
TTATATATTTGTTTCTTTCACAtagtttaacaaaaaaaaagaaatgaatg
AAATACAAAACACTACAAAGATGGTGTGAACTAGATATAAGATATCAGAC
CTATAAGCCAAATGaagtaaaaatacaaaaacaatgaGTCGAACCAGTGC
TGCAGAATTGAAAGAACAAGGTAACCGCTTGTTCGCAGCCAGAAATTATG
ATGACGCTATTGGATGTTACANCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012667XLOC_012667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022581-exon-sc0000427-1491911889:88426..88701TCONS_00022581-exon-sc0000427-1491911889:88426..88701Clytia hemisphaericaexon
TCONS_00022581-exon-sc0000427-1510915933:88426..88701TCONS_00022581-exon-sc0000427-1510915933:88426..88701Clytia hemisphaericaexon
TCONS_00022581-exon-sc0000427-1575043694:88426..88701TCONS_00022581-exon-sc0000427-1575043694:88426..88701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:88426..88701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.0786	19.8305	17.7117	6.93124	77.3494	75.014	76.4233	67.7809	37.3489	39.7314	27.9987	30.2124	20.4604	27.0106	14.5081	24.1486	45.7979	29.2882	13.8573	29.5813	20.67	17.7052	25.1101	25.5465	41.9876	40.9705	30.7443	22.8915	22.5711	22.9964
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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