TCONS_00022587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022587
Unique NameTCONS_00022587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022587 ID=TCONS_00022587|Name=TCONS_00022587|organism=Clytia hemisphaerica|type=transcript|length=815bp
GTCGCTTTGtattatggagataaaaatTCCGGGATTATGGgtgaaaaagt
ttagaaattatttcTGTTATTTCTTAAATGTAAACTATGCGAGTCGTATA
GCTAAAATAAAGATGActgacgaaacaacgatgaaaTATTCATATACAGC
GCGAGCAATGGGAGGAGAAGGGTTGAATATTTTGAGATCAAGTTTGATTG
CCATGGCCGACATTATTTGAATGGGGGTAGGggttcaaaatcaaaacgtc
CATTTGACGTTTTCCGTGGCAAGTCTGAATTTGGAAGGCTCCCCTAAtgt
caattgacgtttttctaacctaaAATTGATTTGCGAGTGCAACAAATTCT
CACAATTCACCCAAAATTCCCTCTTTTTTAAAACACCACCCTCCTCCAAA
TATGCGCCTAacctaaaatcacaaaaattcaataattaaaGCGTGGCACT
TGCTATGGTTATTAACCTTGTCACAAAGCAATCGAAAAGATCAAACCTAT
CGAACTTTGATCGAACCTCTCTAGTGAACAAACTGCGATCAAACCTATCA
AACTATAATTGAATCCTGATCAAACATCAATCTAACAGTCATCAAACttt
acccaaattttttttatttgattactgttcgatttggAACTATTATTGTT
CCATGAAGTTGGATTAGTTGTTTGGGTAATAAAAAAGCGTAAAGCATGGT
TCAAAAGCATAAGCCTCATGGATAAACCTTGAGCATTGGTAGGTCTAACA
AGCAACTTCGTTATTAAGAAAAGGTTGATGAAAAAACTGTCTACTGTAGa
atagtctgaatcgca
Run BLAST on NCBI

transcript from alignment at sc0000427:228281..229095

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022587 ID=TCONS_00022587|Name=TCONS_00022587|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at sc0000427:228281..229095 (Clytia hemisphaerica)
tgcgattcagactattCTACAGTAGACAGTTTTTTCATCAACCTTTTCTT
AATAACGAAGTTGCTTGTTAGACCTACCAATGCTCAAGGTTTATCCATGA
GGCTTATGCTTTTGAACCATGCTTTACGCTTTTTTATTACCCAAACAACT
AATCCAACTTCATGGAACAATAATAGTTccaaatcgaacagtaatcaaat
aaaaaaaatttgggtaaaGTTTGATGACTGTTAGATTGATGTTTGATCAG
GATTCAATTATAGTTTGATAGGTTTGATCGCAGTTTGTTCACTAGAGAGG
TTCGATCAAAGTTCGATAGGTTTGATCTTTTCGATTGCTTTGTGACAAGG
TTAATAACCATAGCAAGTGCCACGCtttaattattgaatttttgtgattt
taggtTAGGCGCATATTTGGAGGAGGGTGGTGTTTTAAAAAAGAGGGAAT
TTTGGGTGAATTGTGAGAATTTGTTGCACTCGCAAATCAATTttaggtta
gaaaaacgtcaattgacaTTAGGGGAGCCTTCCAAATTCAGACTTGCCAC
GGAAAACGTCAAATGgacgttttgattttgaaccCCTACCCCCATTCAAA
TAATGTCGGCCATGGCAATCAAACTTGATCTCAAAATATTCAACCCTTCT
CCTCCCATTGCTCGCGCTGTATATGAATAtttcatcgttgtttcgtcagT
CATCTTTATTTTAGCTATACGACTCGCATAGTTTACATTTAAGAAATAAC
AgaaataatttctaaactttttcacCCATAATCCCGGAatttttatctcc
ataataCAAAGCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012673XLOC_012673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022587-exon-sc0000427-1491911889:228281..229095TCONS_00022587-exon-sc0000427-1491911889:228281..229095Clytia hemisphaericaexon
TCONS_00022587-exon-sc0000427-1510915933:228281..229095TCONS_00022587-exon-sc0000427-1510915933:228281..229095Clytia hemisphaericaexon
TCONS_00022587-exon-sc0000427-1575043694:228281..229095TCONS_00022587-exon-sc0000427-1575043694:228281..229095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:228281..229095 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260924	0.249064	0.729153	0.259405	0.39475	0.24955	0.0752677	0.281859	0.24667	0.244433	0.118626	0.350911	0.116808	0.121306	0.0664866	0.0356751	0	0.135138	0.248935	0	0.566038	0.165656	0.0671255	0.0610269	0.251425	0.587798	0.0802756	0.482374	0.129959	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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