TCONS_00022594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022594
Unique NameTCONS_00022594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022594 ID=TCONS_00022594|Name=TCONS_00022594|organism=Clytia hemisphaerica|type=transcript|length=1609bp
GAAATACCTCAGAACTCAACATAAAAGCCAGCTGCGATATCACCAAACTA
TCATCAAATTTTGTTTGTCTATTGCTGCCAAATCTTCATCTGCTTATGAG
CAGCTCAGACTGGACAAGGATGGTTCTGGGGTACTAATTTTGCCCAGTCA
AAAGACACTGCGTAGCTATCGAAACTACATCAAACCAAAACAAGGCTTCA
ACCCTGATATCATCAAAGATTTAACTGAAAGAACAAAGAACTTTTGTAAT
CCTGAGCGTTATGTAACAATACTCATCGATGAAATGAAAGTGCTAGAAGA
TCTTGTTTGGGATAAGCATACGGGTGATTTGGTTGGTTTCGTTGACTTTG
GAGATGAAGAAATCAATGAGGCTTTGATTGATGATAGGGAAAAGTTGGAT
ACACATGTCATGGTTTTCCTAGTAAAGAGTACAATGAATCCTCTATCctt
cagcttttcaaatttccaaacaGATTGTGCTACCGCATCACAAATCTTCT
CACTCTATTGGAAATGTGTCAGTATCCTTGAAATTTCATGCAATTTGAAA
GTCATCGCCACAGTTGCTGATGCTGCATCAATAAACTGCCGGTTCTTCCA
AATGAATAGGGATCCAGATGATACTAGCTCAATCGTTTACAAAGTCAAAA
AACCAATATACAGACTCTGATCGTTACATCTATTTCTTCTCGGACCCTCT
TCACCTCATGAAGACAGCACGAAATTGTCTTTGGTCTTCAGGAGCAGATT
TCTCATTAAGACTTCTTTGGAATTCAGGTGACTACCTTCTTTTGGTCCCA
CattaaaagtcttttttttgaagacttggAAGATGATTTGCACTTTCCAA
CCAAACTGACAACAGACCACATCATGCTTACATCATATTCGAAAATGAGA
GTCAATCTAGCTACCGAATTGCTGAGTGAGACAGTTGGCAACATAATCAG
GTATTTCGGACCCAAAGCTGCACAAGCTACATCTGAATTCTGTCTCATGT
TCGATAAATTTCTCGAGTGTTTTAATGTTAGAAACAGTGTCGAACACAAC
AAAAAGAGGAAACCCTTTCTTGAACCATACAGAAAGGATAATTGTCAAGA
ACGATTCGACTTTCTTGATAGATTTGTTGATTATTTAAACGAATAGAAGG
AGAGCATCAACGACCGCCAGGGAGAATTCAACCCCACCCACCGAAATGTT
CCTTTCCTTACCAACGTACAATAGAATCATTATGAATGTAAATTCGCTAA
AGGAAATTATTCCTTATCTTTTGGATAACGGAGTGGATTATGTTTTCAGC
GAAAACTTCTGTCAGGACGACCTTGAGAATTATTTTGGGAGACAACGAGC
TATTGGAAGACGCAAAGATAATCCAAGTGTCAAGGACACAGTCAAAATTG
ATAGTATCATTAAATCTGGGTTTGAGACTAAGCCGATATGTGGAGCAAAC
TGTGAAAGCAAAACGGACTTTTCTATCGATGAGACtccattaaaaaagaa
aaagtgactTTGGAATTCCGAAACCTTTAAACGTTAATAGCAAGGGATTG
TACTTAGATTATATTAGAAttttcttaaagttttttttcaatgctaaaaa
tcATACTTC
Run BLAST on NCBI

protein sequence of TCONS_00022594-protein

>TCONS_00022594-protein ID=TCONS_00022594-protein|Name=TCONS_00022594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
KYLRTQHKSQLRYHQTIIKFCLSIAAKSSSAYEQLRLDKDGSGVLILPSQ
KTLRSYRNYIKPKQGFNPDIIKDLTERTKNFCNPERYVTILIDEMKVLED
LVWDKHTGDLVGFVDFGDEEINEALIDDREKLDTHVMVFLVKSTMNPLSF
SFSNFQTDCATASQIFSLYWKCVSILEISCNLKVIATVADAASINCRFFQ
MNRDPDDTSSIVYKVKKPIYRL
Run BLAST on NCBI

transcript from alignment at sc0000428:95784..98385-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022594 ID=TCONS_00022594|Name=TCONS_00022594|organism=Clytia hemisphaerica|type=transcript|length=2602bp|location=Sequence derived from alignment at sc0000428:95784..98385- (Clytia hemisphaerica)
GAAATACCTCAGAACTCAACATAAAAGCCAGCTGCGATATCACCAAACTA
TCATCAAATTTTGTTTGTCTATTGCTGCCAAATCTTCATCTGCTTATGAG
CAGCTCAGACTGGACAAGGATGGTTCTGGGGTACTAATTTTGCCCAGTCA
AAAGACACTGCGTAGCTATCGAAACTACATCAAACCAAAACAAGGTATGT
TGTTCTATATTGGAGTTAAAAGTTTTTACTTTAATTTATAGATCTGATCT
GATTTGCATATTATGAATATAATTTGCTGACACCCATGTGAAGTTGAGTT
GCTCTGTTAAGCTAGTTAATACTCCAAATAGCAAACTTCTGCTGGCTATT
AGACTGCACTATTGGGTTGTAACAAATTGCAGACCAGAAGGGTTTCTCTC
AATGTGGGTTCGATGAAAGTTGTGTCCAGATTACAGAAGAGCAGCCAAAC
TATAAAAACATTATATATGTGAAATTAATTTAGCTTTACCACATTTGACA
TTTGTAAATTTGAGCCTACTTTCTGAACAAAGTAACCCAATTTTGAAGGT
ACCTGATTTAATCTTTTAGGCTTCAACCCTGATATCATCAAAGATTTAAC
TGAAAGAACAAAGAACTTTTGTAATCCTGAGCGTTATGTAACAATACTCA
TCGATGAAATGAAAGTGCTAGAAGATCTTGTTTGGGATAAGCATACGGGT
GATTTGGTTGGTTTCGTTGACTTTGGAGATGAAGAAATCAATGAGGCTTT
GATTGATGATAGGGAAAAGTTGGATACACATGTCATGGTTTTCCTAGTAA
AGAGTACAATGAATCCTCTATCCTTCAGCTTTTCAAATTTCCAAACAGAT
TGTGCTACCGCATCACAAATCTTCTCACTCTATTGGAAATGTGTCAGTAT
CCTTGAAATTTCATGCAATTTGAAAGTCATCGCCACAGTTGCTGATGCTG
CATCAATAAACTGCCGGTTCTTCCAAATGAATAGGGTATGCATTTTAATT
ATTGGAATAGTTACATTATATCGGGCTATATTGGTATAACACAATCTATC
TTAAAGATAATGACTGTCTTACTTTTAAACATGCATGTGAATAGCCTGAT
TAACTTGATAATGGCTATGGTACCTTATTCAATGAAATTTTGGGGGATTA
GGGAAAAAATTAATTTTAGCAGGAATTTAAATTGGTGGATGACAGATTTT
TAGGTCGAAAATCAAGGTCAACCCATTGATATTGCATACTTTTAGTGCTG
TGAAAAATCAGACATTAACCGAAAAAAATTAAATTTGGTGGGGATTTAAT
TTTGCAGATGGCGAATAAAATTGAATTTGGCGGAACTTAATTTGGCGGAT
TTAAGGCAAATCCCGCAAATCTGCCAGATTTTCTTCCCGCCAAAATTTCT
TCGTTATTTTATTGGATGTTGCTTTGGAAGTATAATTATGAATTCTTTAA
TCATTCTAACCTATTCCATATTCAGGATCCAGATGATACTAGCTCAATCG
TTTACAAAGTCAAAAAACCAATATACAGACTCTGATCGTTACATCTATTT
CTTCTCGGACCCTCTTCACCTCATGAAGACAGCACGAAATTGTCTTTGGT
CTTCAGGAGCAGATTTCTCATTAAGACTTCTTTGGAATTCAGGTGATCTA
TTTTTTGAAATTTTTGATAACACTCTAATGGCAGTCTCACTTATCTTTGA
TTAAGATGTTTTTTTCACATCCCACTCAATTTTTTGTGTTACTTTTAATG
TTTTCCTCTTTATCTTATAGGTGACTACCTTCTTTTGGTCCCACATTAAA
AGTCTTTTTTTTGAAGACTTGGAAGATGATTTGCACTTTCCAACCAAACT
GACAACAGACCACATCATGCTTACATCATATTCGAAAATGAGAGTCAATC
TAGCTACCGAATTGCTGAGTGAGACAGTTGGCAACATAATCAGGTATTTC
GGACCCAAAGCTGCACAAGCTACATCTGAATTCTGTCTCATGTTCGATAA
ATTTCTCGAGTGTTTTAATGTTAGAAACAGTGTCGAACACAACAAAAAGA
GGAAACCCTTTCTTGAACCATACAGAAAGGATAATTGTCAAGAACGATTC
GACTTTCTTGATAGATTTGTTGATTATTTAAACGAATAGAAGGAGAGCAT
CAACGACCGCCAGGGAGAATTCAACCCCACCCACCGAAATGTTCCTTTCC
TTACCAACGTACAATAGAATCATTATGAATGTAAATTCGCTAAAGGAAAT
TATTCCTTATCTTTTGGATAACGGAGTGGATTATGTTTTCAGCGAAAACT
TCTGTCAGGACGACCTTGAGAATTATTTTGGGAGACAACGAGCTATTGGA
AGACGCAAAGATAATCCAAGTGTCAAGGACACAGTCAAAATTGATAGTAT
CATTAAATCTGGGTTTGAGACTAAGCCGATATGTGGAGCAAACTGTGAAA
GCAAAACGGACTTTTCTATCGATGAGACTCCATTAAAAAAGAAAAAGTGA
CTTTGGAATTCCGAAACCTTTAAACGTTAATAGCAAGGGATTGTACTTAG
ATTATATTAGAATTTTCTTAAAGTTTTTTTTCAATGCTAAAAATCATACT
TC

Coding sequence (CDS) from alignment at sc0000428:95784..98385-

>TCONS_00022594 ID=TCONS_00022594|Name=TCONS_00022594|organism=Clytia hemisphaerica|type=CDS|length=2007bp|location=Sequence derived from alignment at sc0000428:95784..98385- (Clytia hemisphaerica)
GATCCAGATGATACTAGCTCAATCGTTTACAAAGTCAAAAAACCAATATA
CAGACTCTGAGCTTCAACCCTGATATCATCAAAGATTTAACTGAAAGAAC
AAAGAACTTTTGTAATCCTGAGCGTTATGTAACAATACTCATCGATGAAA
TGAAAGTGCTAGAAGATCTTGTTTGGGATAAGCATACGGGTGATTTGGTT
GGTTTCGTTGACTTTGGAGATGAAGAAATCAATGAGGCTTTGATTGATGA
TAGGGAAAAGTTGGATACACATGTCATGGTTTTCCTAGTAAAGAGTACAA
TGAATCCTCTATCCTTCAGCTTTTCAAATTTCCAAACAGATTGTGCTACC
GCATCACAAATCTTCTCACTCTATTGGAAATGTGTCAGTATCCTTGAAAT
TTCATGCAATTTGAAAGTCATCGCCACAGTTGCTGATGCTGCATCAATAA
ACTGCCGGTTCTTCCAAATGAATAGGAAATACCTCAGAACTCAACATAAA
AGCCAGCTGCGATATCACCAAACTATCATCAAATTTTGTTTGTCTATTGC
TGCCAAATCTTCATCTGCTTATGAGCAGCTCAGACTGGACAAGGATGGTT
CTGGGGTACTAATTTTGCCCAGTCAAAAGACACTGCGTAGCTATCGAAAC
TACATCAAACCAAAACAAGGATCCAGATGATACTAGCTCAATCGTTTACA
AAGTCAAAAAACCAATATACAGACTCTGAGCTTCAACCCTGATATCATCA
AAGATTTAACTGAAAGAACAAAGAACTTTTGTAATCCTGAGCGTTATGTA
ACAATACTCATCGATGAAATGAAAGTGCTAGAAGATCTTGTTTGGGATAA
GCATACGGGTGATTTGGTTGGTTTCGTTGACTTTGGAGATGAAGAAATCA
ATGAGGCTTTGATTGATGATAGGGAAAAGTTGGATACACATGTCATGGTT
TTCCTAGTAAAGAGTACAATGAATCCTCTATCCTTCAGCTTTTCAAATTT
CCAAACAGATTGTGCTACCGCATCACAAATCTTCTCACTCTATTGGAAAT
GTGTCAGTATCCTTGAAATTTCATGCAATTTGAAAGTCATCGCCACAGTT
GCTGATGCTGCATCAATAAACTGCCGGTTCTTCCAAATGAATAGGAAATA
CCTCAGAACTCAACATAAAAGCCAGCTGCGATATCACCAAACTATCATCA
AATTTTGTTTGTCTATTGCTGCCAAATCTTCATCTGCTTATGAGCAGCTC
AGACTGGACAAGGATGGTTCTGGGGTACTAATTTTGCCCAGTCAAAAGAC
ACTGCGTAGCTATCGAAACTACATCAAACCAAAACAAGGATCCAGATGAT
ACTAGCTCAATCGTTTACAAAGTCAAAAAACCAATATACAGACTCTGAGC
TTCAACCCTGATATCATCAAAGATTTAACTGAAAGAACAAAGAACTTTTG
TAATCCTGAGCGTTATGTAACAATACTCATCGATGAAATGAAAGTGCTAG
AAGATCTTGTTTGGGATAAGCATACGGGTGATTTGGTTGGTTTCGTTGAC
TTTGGAGATGAAGAAATCAATGAGGCTTTGATTGATGATAGGGAAAAGTT
GGATACACATGTCATGGTTTTCCTAGTAAAGAGTACAATGAATCCTCTAT
CCTTCAGCTTTTCAAATTTCCAAACAGATTGTGCTACCGCATCACAAATC
TTCTCACTCTATTGGAAATGTGTCAGTATCCTTGAAATTTCATGCAATTT
GAAAGTCATCGCCACAGTTGCTGATGCTGCATCAATAAACTGCCGGTTCT
TCCAAATGAATAGGAAATACCTCAGAACTCAACATAAAAGCCAGCTGCGA
TATCACCAAACTATCATCAAATTTTGTTTGTCTATTGCTGCCAAATCTTC
ATCTGCTTATGAGCAGCTCAGACTGGACAAGGATGGTTCTGGGGTACTAA
TTTTGCCCAGTCAAAAGACACTGCGTAGCTATCGAAACTACATCAAACCA
AAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012680XLOC_012680Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022594-proteinTCONS_00022594-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022594-exon-sc0000428-1575043694:98192..98385TCONS_00022594-exon-sc0000428-1575043694:98192..98385Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1575043694:97401..97816TCONS_00022594-exon-sc0000428-1575043694:97401..97816Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1575043694:96744..96910TCONS_00022594-exon-sc0000428-1575043694:96744..96910Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1575043694:95784..96615TCONS_00022594-exon-sc0000428-1575043694:95784..96615Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1510915933:98192..98385TCONS_00022594-exon-sc0000428-1510915933:98192..98385Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1510915933:97401..97816TCONS_00022594-exon-sc0000428-1510915933:97401..97816Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1510915933:96744..96910TCONS_00022594-exon-sc0000428-1510915933:96744..96910Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1510915933:95784..96615TCONS_00022594-exon-sc0000428-1510915933:95784..96615Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1491911889:98192..98385TCONS_00022594-exon-sc0000428-1491911889:98192..98385Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1491911889:97401..97816TCONS_00022594-exon-sc0000428-1491911889:97401..97816Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1491911889:96744..96910TCONS_00022594-exon-sc0000428-1491911889:96744..96910Clytia hemisphaericaexon
TCONS_00022594-exon-sc0000428-1491911889:95784..96615TCONS_00022594-exon-sc0000428-1491911889:95784..96615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000428supercontigsc0000428:95784..98385 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0253412	0.0494234	0	0	0.307567	0.270048	0.0977405	0.0915035	0.0213546	0.264511	0.179719	0.253157	0.168537	0.0350054	0.100727	0.061769	0.0760943	0.0584957	0	0	0.0735041	0.107558	0.0871673	0.184911	0.544155	0.461363	0.764453	0.445006	0.0843804	0.0286568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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