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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022603 ID=TCONS_00022603|Name=TCONS_00022603|organism=Clytia hemisphaerica|type=transcript|length=1444bp
AGACAATCACCTTCCATCAAAAGGTCCAGCCGGAAAGCAAATCATCCAAT
ACCACACATGTCACAAATTTGCTGAGTTGAGTCCTGCCAACCGTTATGCT
GTTCTCCAAGCAAAAGGATACTGCTATCAATGTCTCTTCCCAGGAGCAAG
CATCTCACATGGGCGTCACAAAGAAGGCAAATGTCAACGTGACTTTGCAT
GCCCGCACGCATCACATCAAGACTACCCACGTAAACATATCCTTGTCTGT
CACGATCACAAAGACACGGATGCAAACAAAAAACTCCTCGAGAAATATAA
GTCGAAGTACCTGAAGAATCCAAACCTACCACCATTCACAAAGAACATAA
GTCTTTCATTCCATTCGTGCTTCAAAACAACCCCTTCATCAAATCCATCC
ACTTCACTAGACTATCAATCAACAAGTGACGATGAAGGCATCTACCTACT
TCAAAACGTTGTCATCGACCACAAGGTATTCACAGTTTTCTTCGACAGTG
GTTGCAGTGACTTTATAGTGAAACACAGTGCAATCAAGAAGCTTTGTACG
AATGTCACTCAAGAGTCATCAGAGATCACATCAATTGGCACCTCGACACA
AACAACACTTGGAACATACAACGTCCAGATGCCCATGATGAATGGCAAAC
TAGCATCCGTCAGAGGCGTGTGTATGGACCAGATCACATCAACCTTTCCA
CGCTATCCATTGACTGAAGTATTCCAACAAATCTGCAAGACGTACTCAAA
AGATCCGTCAACTCTTCCAGAGCCATCAGCCCATGTTGGTGGAGATGTTC
ATCTGATGCTTGGTATCAAATACAACAGGTATTATCCTAAACTTATATAT
CAACTACATTCTGGTCTGGCAATCTATCAATCAGTCTTTCGCAACAGTGA
TGGAGGTTCAGGCATCATTGGTTGTCCACGTCAAATTTTCACAGCCATTC
ACAATCAATTCTATGGCACCTCTAACATGTCAGGATTCTTCACCTGTCAA
TACAAAATCTACAAAGATGGAATCAATATCAACCCAGATGCATCTCATCT
CTCATTTCCATCCAGAAGTATCAAACGTTTCGAAACATCTGAATCAACTG
GCTCCGAAATTACTTATCGCTGTGTCAGTTGTCGAAATTGTAAAGATTGC
AAGAATTCAGAACACCAACGTGAAATCAGCATCAAGGAGGAAGTTGAACA
GAGCATCATTGACGCTTCACTTGACATCAATCTGGACACCCAAACGATGA
TGGCTAAATTACCCTTTATCGACAGACCATCAAAGCTCGCTCCCAACAAA
GACATTGCTTCTCGCATCTATTATCAACAGCTGAAGAAACTCGATCGTCC
AgagaacaacaaagacaaagCCGACATCCTTGAATCGGAAGCCAAGTTGC
AAAAGCTTGGGTACGTTGAGTATGTTGAAAACCTTACACCTGAG Run BLAST on NCBI protein sequence of TCONS_00022603-protein >TCONS_00022603-protein ID=TCONS_00022603-protein|Name=TCONS_00022603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
DNHLPSKGPAGKQIIQYHTCHKFAELSPANRYAVLQAKGYCYQCLFPGAS
ISHGRHKEGKCQRDFACPHASHQDYPRKHILVCHDHKDTDANKKLLEKYK
SKYLKNPNLPPFTKNISLSFHSCFKTTPSSNPSTSLDYQSTSDDEGIYLL
QNVVIDHKVFTVFFDSGCSDFIVKHSAIKKLCTNVTQESSEITSIGTSTQ
TTLGTYNVQMPMMNGKLASVRGVCMDQITSTFPRYPLTEVFQQICKTYSK
DPSTLPEPSAHVGGDVHLMLGIKYNRYYPKLIYQLHSGLAIYQSVFRNSD
GGSGIIGCPRQIFTAIHNQFYGTSNMSGFFTCQYKIYKDGININPDASHL
SFPSRSIKRFETSESTGSEITYRCVSCRNCKDCKNSEHQREISIKEEVEQ
SIIDASLDINLDTQTMMAKLPFIDRPSKLAPNKDIASRIYYQQLKKLDRP
ENNKDKADILESEAKLQKLGYVEYVENLTPE Run BLAST on NCBI transcript from alignment at sc0000428:76960..78403 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022603 ID=TCONS_00022603|Name=TCONS_00022603|organism=Clytia hemisphaerica|type=transcript|length=1444bp|location=Sequence derived from alignment at sc0000428:76960..78403 (Clytia hemisphaerica)
CTCAGGTGTAAGGTTTTCAACATACTCAACGTACCCAAGCTTTTGCAACT
TGGCTTCCGATTCAAGGATGTCGGctttgtctttgttgttctcTGGACGA
TCGAGTTTCTTCAGCTGTTGATAATAGATGCGAGAAGCAATGTCTTTGTT
GGGAGCGAGCTTTGATGGTCTGTCGATAAAGGGTAATTTAGCCATCATCG
TTTGGGTGTCCAGATTGATGTCAAGTGAAGCGTCAATGATGCTCTGTTCA
ACTTCCTCCTTGATGCTGATTTCACGTTGGTGTTCTGAATTCTTGCAATC
TTTACAATTTCGACAACTGACACAGCGATAAGTAATTTCGGAGCCAGTTG
ATTCAGATGTTTCGAAACGTTTGATACTTCTGGATGGAAATGAGAGATGA
GATGCATCTGGGTTGATATTGATTCCATCTTTGTAGATTTTGTATTGACA
GGTGAAGAATCCTGACATGTTAGAGGTGCCATAGAATTGATTGTGAATGG
CTGTGAAAATTTGACGTGGACAACCAATGATGCCTGAACCTCCATCACTG
TTGCGAAAGACTGATTGATAGATTGCCAGACCAGAATGTAGTTGATATAT
AAGTTTAGGATAATACCTGTTGTATTTGATACCAAGCATCAGATGAACAT
CTCCACCAACATGGGCTGATGGCTCTGGAAGAGTTGACGGATCTTTTGAG
TACGTCTTGCAGATTTGTTGGAATACTTCAGTCAATGGATAGCGTGGAAA
GGTTGATGTGATCTGGTCCATACACACGCCTCTGACGGATGCTAGTTTGC
CATTCATCATGGGCATCTGGACGTTGTATGTTCCAAGTGTTGTTTGTGTC
GAGGTGCCAATTGATGTGATCTCTGATGACTCTTGAGTGACATTCGTACA
AAGCTTCTTGATTGCACTGTGTTTCACTATAAAGTCACTGCAACCACTGT
CGAAGAAAACTGTGAATACCTTGTGGTCGATGACAACGTTTTGAAGTAGG
TAGATGCCTTCATCGTCACTTGTTGATTGATAGTCTAGTGAAGTGGATGG
ATTTGATGAAGGGGTTGTTTTGAAGCACGAATGGAATGAAAGACTTATGT
TCTTTGTGAATGGTGGTAGGTTTGGATTCTTCAGGTACTTCGACTTATAT
TTCTCGAGGAGTTTTTTGTTTGCATCCGTGTCTTTGTGATCGTGACAGAC
AAGGATATGTTTACGTGGGTAGTCTTGATGTGATGCGTGCGGGCATGCAA
AGTCACGTTGACATTTGCCTTCTTTGTGACGCCCATGTGAGATGCTTGCT
CCTGGGAAGAGACATTGATAGCAGTATCCTTTTGCTTGGAGAACAGCATA
ACGGTTGGCAGGACTCAACTCAGCAAATTTGTGACATGTGTGGTATTGGA
TGATTTGCTTTCCGGCTGGACCTTTTGATGGAAGGTGATTGTCT Coding sequence (CDS) from alignment at sc0000428:76960..78403 >TCONS_00022603 ID=TCONS_00022603|Name=TCONS_00022603|organism=Clytia hemisphaerica|type=CDS|length=1443bp|location=Sequence derived from alignment at sc0000428:76960..78403 (Clytia hemisphaerica)
CTCAGGTGTAAGGTTTTCAACATACTCAACGTACCCAAGCTTTTGCAACT
TGGCTTCCGATTCAAGGATGTCGGctttgtctttgttgttctcTGGACGA
TCGAGTTTCTTCAGCTGTTGATAATAGATGCGAGAAGCAATGTCTTTGTT
GGGAGCGAGCTTTGATGGTCTGTCGATAAAGGGTAATTTAGCCATCATCG
TTTGGGTGTCCAGATTGATGTCAAGTGAAGCGTCAATGATGCTCTGTTCA
ACTTCCTCCTTGATGCTGATTTCACGTTGGTGTTCTGAATTCTTGCAATC
TTTACAATTTCGACAACTGACACAGCGATAAGTAATTTCGGAGCCAGTTG
ATTCAGATGTTTCGAAACGTTTGATACTTCTGGATGGAAATGAGAGATGA
GATGCATCTGGGTTGATATTGATTCCATCTTTGTAGATTTTGTATTGACA
GGTGAAGAATCCTGACATGTTAGAGGTGCCATAGAATTGATTGTGAATGG
CTGTGAAAATTTGACGTGGACAACCAATGATGCCTGAACCTCCATCACTG
TTGCGAAAGACTGATTGATAGATTGCCAGACCAGAATGTAGTTGATATAT
AAGTTTAGGATAATACCTGTTGTATTTGATACCAAGCATCAGATGAACAT
CTCCACCAACATGGGCTGATGGCTCTGGAAGAGTTGACGGATCTTTTGAG
TACGTCTTGCAGATTTGTTGGAATACTTCAGTCAATGGATAGCGTGGAAA
GGTTGATGTGATCTGGTCCATACACACGCCTCTGACGGATGCTAGTTTGC
CATTCATCATGGGCATCTGGACGTTGTATGTTCCAAGTGTTGTTTGTGTC
GAGGTGCCAATTGATGTGATCTCTGATGACTCTTGAGTGACATTCGTACA
AAGCTTCTTGATTGCACTGTGTTTCACTATAAAGTCACTGCAACCACTGT
CGAAGAAAACTGTGAATACCTTGTGGTCGATGACAACGTTTTGAAGTAGG
TAGATGCCTTCATCGTCACTTGTTGATTGATAGTCTAGTGAAGTGGATGG
ATTTGATGAAGGGGTTGTTTTGAAGCACGAATGGAATGAAAGACTTATGT
TCTTTGTGAATGGTGGTAGGTTTGGATTCTTCAGGTACTTCGACTTATAT
TTCTCGAGGAGTTTTTTGTTTGCATCCGTGTCTTTGTGATCGTGACAGAC
AAGGATATGTTTACGTGGGTAGTCTTGATGTGATGCGTGCGGGCATGCAA
AGTCACGTTGACATTTGCCTTCTTTGTGACGCCCATGTGAGATGCTTGCT
CCTGGGAAGAGACATTGATAGCAGTATCCTTTTGCTTGGAGAACAGCATA
ACGGTTGGCAGGACTCAACTCAGCAAATTTGTGACATGTGTGGTATTGGA
TGATTTGCTTTCCGGCTGGACCTTTTGATGGAAGGTGATTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022603-exon-sc0000428-1491911889:76960..78403 | TCONS_00022603-exon-sc0000428-1491911889:76960..78403 | Clytia hemisphaerica | exon |
| TCONS_00022603-exon-sc0000428-1510915933:76960..78403 | TCONS_00022603-exon-sc0000428-1510915933:76960..78403 | Clytia hemisphaerica | exon |
| TCONS_00022603-exon-sc0000428-1575043694:76960..78403 | TCONS_00022603-exon-sc0000428-1575043694:76960..78403 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000428 | supercontig | sc0000428:76960..78403 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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