TCONS_00022631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022631
Unique NameTCONS_00022631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022631 ID=TCONS_00022631|Name=TCONS_00022631|organism=Clytia hemisphaerica|type=transcript|length=364bp
TTGGGTTTTGATCAAGTTTTGATGTTtcttctcttgggagaagttcACAG
ATTAaccttttccttttctttttattcatgGGGTGATGGAACGACGGTAA
AACGACGAAACGACGAAGACAACAGACAACATTTCATCAATTAATGTGTC
ACCATCAACGCAACCTTCACAAGTACTTAGCGTACCACCACCGTTCTTGT
ACAAGTAACCATTACGTACATGCAAACTGTTTGGATGGCtgggacaattt
ttttttctcttctcttttatcacccaaAAGAAAATAGTCGGTATATCGTT
ATGGTCAATGTGTGATGctgatcaaaagaagaaattggaACAACCTTTTT
ATTCTTTAACAATA
Run BLAST on NCBI

transcript from alignment at sc0000429:251497..252042+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022631 ID=TCONS_00022631|Name=TCONS_00022631|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0000429:251497..252042+ (Clytia hemisphaerica)
TTGGGTTTTGATCAAGTTTTGATGTTtcttctcttgggagaagttcACAG
ATTAaccttttccttttctttttattcatgGGGTGATGGAACGACGGTAA
AACGACGAAACGACGAAGACAACAGACAACATTTCATCAATTAATGTGTC
ACCATCAACGCAACCTTCACAAGTACTTAGGTAGGctttcaaagtgaaaa
aaaaacattccggGTATTAAAATCATATCTAGGTAGGTTTTCGTAACGTT
CAATTTGTCTGAGCTGATTGAGTAACTTCGTCAACTGGACGCTATATATT
ACCTGGGTTTTCGTATTGTAACGACACACtactttgccaaattttttgTT
CTATCTATTTAGCGTACCACCACCGTTCTTGTACAAGTAACCATTACGTA
CATGCAAACTGTTTGGATGGCtgggacaatttttttttctcttctctttt
atcacccaaAAGAAAATAGTCGGTATATCGTTATGGTCAATGTGTGATGc
tgatcaaaagaagaaattggaACAACCTTTTTATTCTTTAACAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012709XLOC_012709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022631-exon-sc0000429-1491911889:251497..251676TCONS_00022631-exon-sc0000429-1491911889:251497..251676Clytia hemisphaericaexon
TCONS_00022631-exon-sc0000429-1510915933:251497..251676TCONS_00022631-exon-sc0000429-1510915933:251497..251676Clytia hemisphaericaexon
TCONS_00022631-exon-sc0000429-1575043694:251497..251676TCONS_00022631-exon-sc0000429-1575043694:251497..251676Clytia hemisphaericaexon
TCONS_00022631-exon-sc0000429-1491911889:251859..252042TCONS_00022631-exon-sc0000429-1491911889:251859..252042Clytia hemisphaericaexon
TCONS_00022631-exon-sc0000429-1510915933:251859..252042TCONS_00022631-exon-sc0000429-1510915933:251859..252042Clytia hemisphaericaexon
TCONS_00022631-exon-sc0000429-1575043694:251859..252042TCONS_00022631-exon-sc0000429-1575043694:251859..252042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000429supercontigsc0000429:251497..252042 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.791197	0.622798	0.882817	0.550989	0	0.238913	0.245407	0.914631	0.15738	0.0421935	0	0	0	0	0	0.25461	0.221303	0	0	0	0.638163	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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